Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000255.1

Orthogroup ID

OG0003372

Physical Location & Seq

Genomic Coordinates Reverse (-)

176192 .. 179660

Gene Structure 3469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000255.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggtatggttggaattaggaggaggagagcttcgaacccgggtggttttgagctcaaccgctgccggaatggaaagctatgactggggcagcgccgcagttagggctgtcaattctgacaccaaacgagaagaaaaggaagaagagcacaatgtgaagaccccaaaaccctcgtcgtcctccgccaacaaagacgccgccgatggcttcgaaactgccagcgacggcgagttgggaccgaacgaaagcgacggtgaaactcaacaccccgtccaacttgaagagacggatgaccttgcattcaaacagaaatcgcttgagcaagcaaatgaggtaaaattggaaggcaatggactgtttgggaatggacaatatgaagaggcattgtcgaagtatgaacttgctttacagcttgcgccggacatgccttcgtctgtggaattacgttccatatgtcattcgaaccgtgccatatgcttttcgaagctgggaaaatatgacgacacggttaaggaatgcacaaaagcactggaactaaatccttcatatatgaaagcgctgattagaagagcagaagctcatgaaaaactagaacatttcgaagaggctattgctgatatgaaaaaaatcttagaacttgatccttcaaatgaccaagccaggaaggccattcggcgcttggagccactagctgaagcaaagagagaaaagatgaaagaggagatgattgggaagttgaaagatatgggcaactcgttgttgggccggtttggaatgagcgttgacaacttcaaagctgtaaaagatccaaacactggctcgtattctgtttcattccaacgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

281

Amino Acids

31.2

Weight (kDa)

5.1

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30480 AT4G30480 AT4G30480
fragaria_vesca	FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_4g08690
malus_domestica	MD04G1009600.v1.1 MD16G1260600.v1.1
prunus_persica	Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.8G039000_v2.0.a1 Prupe.8G039000_v2.0.a1
pyrus_communis	pycom04g00740 pycom16g22830
rosa_chinensis	RchiOBHm_Chr4g0405181
rosa_laevigata	RLG00000008866
rosa_multiflora	Rmu_sc0004988.1_g000011 Rmu_ssc0000255.1_g000025
rosa_roxburghii	Rroxscaffold_5G00341850 Rroxscaffold_5G00349430
rosa_rugosa	Rorug04G0054700
rosa_samantha	Rh4AG129500 Rh4BG123300 Rh4CG136800 Rh4DG123000
rosa_wichuraiana	Rw4G010460 Rw5G038600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	815
AciI	CCGC	4 cut(s)	60, 96, 183, 198
AclI	AACGTT	1 cut(s)	841
AclWI	GGATC	2 cut(s)	635, 800
AcuI	CTGAAG	1 cut(s)	714
AcyI	GRCGYC	1 cut(s)	195
AdeI	CACNNNGTG	1 cut(s)	154
AfeI	AGCGCT	1 cut(s)	558
AfiI	CCNNNNNNNGG	2 cut(s)	102, 815
AgsI	TTSAA	5 cut(s)	281, 304, 648, 739, 793
AjnI	CCWGG	1 cut(s)	659
AluBI	AGCT	8 cut(s)	31, 54, 78, 412, 487, 578, 692, 797
AluI	AGCT	8 cut(s)	31, 54, 78, 412, 487, 578, 692, 797
Alw21I	GWGCWC	2 cut(s)	56, 150
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	2 cut(s)	635, 800
Ama87I	CYCGRG	1 cut(s)	39
Aor51HI	AGCGCT	1 cut(s)	558
AoxI	GGCC	2 cut(s)	666, 763
ApeKI	GCWGC	2 cut(s)	62, 90
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AspLEI	GCGC	4 cut(s)	95, 418, 559, 678
AspS9I	GGNCC	2 cut(s)	236, 763
AsuC2I	CCSGG	2 cut(s)	40, 41
AsuHPI	GGTGA	1 cut(s)	266
AsuII	TTCGAA	5 cut(s)	34, 210, 461, 482, 600
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	164
Bbv12I	GWGCWC	2 cut(s)	56, 150
BbvI	GCAGC	2 cut(s)	49, 102
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	661
BcnI	CCSGG	2 cut(s)	40, 41
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	2 cut(s)	590, 689
BfoI	RGCGCY	3 cut(s)	96, 560, 679
BglI	GCCNNNNNGGC	1 cut(s)	665
BisI	GCNGC	4 cut(s)	63, 91, 96, 198
BlsI	GCNGC	4 cut(s)	64, 92, 97, 199
Bme1390I	CCNGG	3 cut(s)	40, 41, 661
Bme18I	GGWCC	1 cut(s)	236
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	236, 763
BmiI	GGNNCC	2 cut(s)	237, 684
BmrFI	CCNGG	3 cut(s)	40, 41, 661
BmrI	ACTGGG	1 cut(s)	94
BmuI	ACTGGG	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	164
Bpu14I	TTCGAA	5 cut(s)	34, 210, 461, 482, 600
BpuEI	CTTGAG	1 cut(s)	338
BpuMI	CCSGG	2 cut(s)	40, 41
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 815
Bse118I	RCCGGY	1 cut(s)	765
Bse1I	ACTGG	3 cut(s)	89, 534, 820
Bse3DI	GCAATG	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	661
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	2 cut(s)	102, 815
BseMI	GCAATG	1 cut(s)	355
BseNI	ACTGG	3 cut(s)	89, 534, 820
BseRI	GAGGAG	3 cut(s)	36, 39, 734
BseXI	GCAGC	2 cut(s)	49, 102
BseYI	CCCAGC	1 cut(s)	487
BshFI	GGCC	2 cut(s)	668, 765
BsiHKAI	GWGCWC	2 cut(s)	56, 150
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	4 cut(s)	40, 66, 419, 766
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	2 cut(s)	102, 815
BsmAI	GTCTC	1 cut(s)	278
BsmBI	CGTCTC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	249
BsmI	GAATGC	2 cut(s)	299, 521
BsnI	GGCC	2 cut(s)	668, 765
BsoBI	CYCGRG	1 cut(s)	39
Bsp119I	TTCGAA	5 cut(s)	34, 210, 461, 482, 600
Bsp1286I	GDGCHC	2 cut(s)	56, 150
Bsp143I	GATC	2 cut(s)	640, 805
BspACI	CCGC	4 cut(s)	60, 96, 183, 198
BspANI	GGCC	2 cut(s)	668, 765
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	2 cut(s)	237, 684
BspPI	GGATC	2 cut(s)	635, 800
BspQI	GCTCTTC	2 cut(s)	138, 562
BspT104I	TTCGAA	5 cut(s)	34, 210, 461, 482, 600
BsrDI	GCAATG	1 cut(s)	355
BsrFI	RCCGGY	1 cut(s)	765
BsrI	ACTGG	3 cut(s)	89, 534, 820
BssAI	RCCGGY	1 cut(s)	765
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	2 cut(s)	640, 805
BssNI	GRCGYC	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	661
Bst4CI	ACNGT	4 cut(s)	254, 357, 467, 508
Bst6I	CTCTTC	5 cut(s)	138, 276, 372, 562, 597
BstACI	GRCGYC	1 cut(s)	195
BstBI	TTCGAA	5 cut(s)	34, 210, 461, 482, 600
BstC8I	GCNNGC	3 cut(s)	220, 324, 414
BstDEI	CTNAG	1 cut(s)	631
BstF5I	GGATG	1 cut(s)	295
BstH2I	RGCGCY	3 cut(s)	96, 560, 679
BstHHI	GCGC	4 cut(s)	95, 418, 559, 678
BstKTI	GATC	2 cut(s)	643, 808
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	2 cut(s)	640, 805
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 424, 665, 682
BstNI	CCWGG	1 cut(s)	661
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	3 cut(s)	38, 39, 659
BstV1I	GCAGC	2 cut(s)	49, 102
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	805
BstYI	RGATCY	1 cut(s)	805
BsuRI	GGCC	2 cut(s)	668, 765
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	527, 813
Cac8I	GCNNGC	3 cut(s)	220, 324, 414
CciI	TCATGA	1 cut(s)	580
CfoI	GCGC	4 cut(s)	95, 418, 559, 678
Cfr10I	RCCGGY	1 cut(s)	765
Cfr13I	GGNCC	2 cut(s)	236, 763
Cfr9I	CCCGGG	1 cut(s)	39
CseI	GACGC	1 cut(s)	203
CviAII	CATG	2 cut(s)	424, 581
DdeI	CTNAG	1 cut(s)	631
DpnI	GATC	2 cut(s)	642, 807
DpnII	GATC	2 cut(s)	640, 805
DraIII	CACNNNGTG	1 cut(s)	154
Eam1104I	CTCTTC	5 cut(s)	138, 276, 372, 562, 597
EarI	CTCTTC	5 cut(s)	138, 276, 372, 562, 597
EciI	GGCGGA	1 cut(s)	172
Ecl136II	GAGCTC	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	236
Eco47III	AGCGCT	1 cut(s)	558
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	714
Eco88I	CYCGRG	1 cut(s)	39
EcoICRI	GAGCTC	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	659
EcoT38I	GRGCYC	1 cut(s)	56
Esp3I	CGTCTC	1 cut(s)	278
FaeI	CATG	2 cut(s)	427, 584
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	2 cut(s)	423, 580
FauNDI	CATATG	2 cut(s)	452, 473
Fnu4HI	GCNGC	4 cut(s)	63, 91, 96, 198
FokI	GGATG	1 cut(s)	302
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	4 cut(s)	63, 91, 96, 198
FspBI	CTAG	2 cut(s)	590, 689
GlaI	GCGC	4 cut(s)	94, 417, 558, 677
GluI	GCNGC	4 cut(s)	63, 91, 96, 198
GsaI	CCCAGC	1 cut(s)	491
HaeII	RGCGCY	3 cut(s)	96, 560, 679
HaeIII	GGCC	2 cut(s)	668, 765
HapII	CCGG	4 cut(s)	40, 66, 419, 766
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	4 cut(s)	95, 418, 559, 678
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	427, 584
Hin6I	GCGC	4 cut(s)	93, 416, 557, 676
HinP1I	GCGC	4 cut(s)	93, 416, 557, 676
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HpaII	CCGG	4 cut(s)	40, 66, 419, 766
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	784
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	581
Hpy8I	GTNNAC	1 cut(s)	784
Hpy99I	CGWCG	3 cut(s)	178, 227, 254
HpyAV	CCTTC	5 cut(s)	338, 438, 552, 654, 658
HpyCH4III	ACNGT	4 cut(s)	254, 357, 467, 508
HpyCH4IV	ACGT	2 cut(s)	445, 841
HpyCH4V	TGCA	2 cut(s)	299, 519
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 424, 665, 682
HpyF3I	CTNAG	1 cut(s)	631
HpySE526I	ACGT	2 cut(s)	445, 841
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	427, 584
HspAI	GCGC	4 cut(s)	93, 416, 557, 676
Kzo9I	GATC	2 cut(s)	640, 805
LguI	GCTCTTC	2 cut(s)	138, 562
LmnI	GCTCC	1 cut(s)	682
Lsp1109I	GCAGC	2 cut(s)	49, 102
MaeI	CTAG	2 cut(s)	590, 689
MaeII	ACGT	2 cut(s)	445, 841
MalI	GATC	2 cut(s)	642, 807
MboI	GATC	2 cut(s)	640, 805
MboII	GAAGA	8 cut(s)	143, 152, 155, 169, 293, 389, 579, 614
MflI	RGATCY	1 cut(s)	805
MhlI	GDGCHC	2 cut(s)	56, 150
MluCI	AATT	4 cut(s)	14, 112, 338, 440
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	8 cut(s)	14, 17, 181, 190, 325, 373, 598, 712
MseI	TTAA	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	4 cut(s)	40, 66, 419, 766
MspR9I	CCNGG	3 cut(s)	40, 41, 661
Mva1269I	GAATGC	2 cut(s)	299, 521
MvaI	CCWGG	1 cut(s)	661
MwoI	GCNNNNNNNGC	4 cut(s)	104, 424, 665, 682
NciI	CCSGG	2 cut(s)	40, 41
NdeI	CATATG	2 cut(s)	452, 473
NdeII	GATC	2 cut(s)	640, 805
NlaIII	CATG	2 cut(s)	427, 584
NlaIV	GGNNCC	2 cut(s)	237, 684
NspI	RCATGY	1 cut(s)	427
NspV	TTCGAA	5 cut(s)	34, 210, 461, 482, 600
PagI	TCATGA	1 cut(s)	580
PciSI	GCTCTTC	2 cut(s)	138, 562
PctI	GAATGC	2 cut(s)	299, 521
PflMI	CCANNNNNTGG	1 cut(s)	815
PkrI	GCNGC	4 cut(s)	64, 92, 97, 199
Psp124BI	GAGCTC	1 cut(s)	56
Psp1406I	AACGTT	1 cut(s)	841
Psp6I	CCWGG	1 cut(s)	659
PspFI	CCCAGC	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	659
PspN4I	GGNNCC	2 cut(s)	237, 684
PspPI	GGNCC	2 cut(s)	236, 763
PsrI	GAACNNNNNNTAC	2 cut(s)	390, 422
PsuI	RGATCY	1 cut(s)	805
SacI	GAGCTC	1 cut(s)	56
SapI	GCTCTTC	2 cut(s)	138, 562
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	4 cut(s)	63, 91, 96, 198
Sau3AI	GATC	2 cut(s)	640, 805
Sau96I	GGNCC	2 cut(s)	236, 763
ScrFI	CCNGG	3 cut(s)	40, 41, 661
SduI	GDGCHC	2 cut(s)	56, 150
SfuI	TTCGAA	5 cut(s)	34, 210, 461, 482, 600
SinI	GGWCC	1 cut(s)	236
SmaI	CCCGGG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	4 cut(s)	14, 112, 338, 440
SsiI	CCGC	4 cut(s)	60, 96, 183, 198
SspMI	CTAG	2 cut(s)	590, 689
SstI	GAGCTC	1 cut(s)	56
StyD4I	CCNGG	3 cut(s)	38, 39, 659
TaaI	ACNGT	4 cut(s)	254, 357, 467, 508
TaiI	ACGT	2 cut(s)	448, 844
TaqI	TCGA	6 cut(s)	34, 210, 389, 461, 482, 600
TaqII	GACCGA	1 cut(s)	253
TasI	AATT	4 cut(s)	14, 112, 338, 440
TauI	GCSGC	2 cut(s)	98, 200
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	2 cut(s)	534, 820
TseI	GCWGC	2 cut(s)	62, 90
TspDTI	ATGAA	8 cut(s)	390, 411, 534, 566, 597, 635, 728, 822
TspGWI	ACGGA	1 cut(s)	302
TspMI	CCCGGG	1 cut(s)	39
TspRI	CASTG	2 cut(s)	534, 820
Van91I	CCANNNNNTGG	1 cut(s)	815
VpaK11BI	GGWCC	1 cut(s)	236
XceI	RCATGY	1 cut(s)	427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	676
XmaI	CCCGGG	1 cut(s)	39
XspI	CTAG	2 cut(s)	590, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.