Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003372

Physical Location & Seq

Genomic Coordinates Forward (+)

10484250 .. 10485536

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00341850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAGGGATTGGGCCTCGCTTTGTTGCTTCTGGATCGACGACTTTCGGGAATGTTACCTTTCTGCGGTGGCATGGATCACAAGTGCGGGACTAGGGGGAGTTGTGGTGATGTTGGGTGTGGCGGAGCTGTTTTCGGGTGGTTGGGTCATGGAGGTTGAATCGTGGAGGCGGGATCATGGTGAAGCGGGCGCGACATGGTCGGCGGAGCAAAGCTGGAATTGCATCTTTGTGGCCGGTGTTGTTGTGGATATTGGTTCAAGGAATGGCGTTGTGGGTTGGGGTGGTTTCTCGGTCCCAAAGATCCGTACTTGGCGGTGGCGGGTTGAAGTCAACATAGAGGAGTTTATTGGTGGTTCGGTGGGTTGGAATTCGGATCTTTCACGCACGGGTCTGTCAATGGCTGCGGTAGTGGTGACGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.42

Weight (kDa)

4.91

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30480 AT4G30480 AT4G30480
fragaria_vesca	FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_4g08690
malus_domestica	MD04G1009600.v1.1 MD16G1260600.v1.1
prunus_persica	Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.8G039000_v2.0.a1 Prupe.8G039000_v2.0.a1
pyrus_communis	pycom04g00740 pycom16g22830
rosa_chinensis	RchiOBHm_Chr4g0405181
rosa_laevigata	RLG00000008866
rosa_multiflora	Rmu_sc0004988.1_g000011 Rmu_ssc0000255.1_g000025
rosa_roxburghii	Rroxscaffold_5G00341850 Rroxscaffold_5G00349430
rosa_rugosa	Rorug04G0054700
rosa_samantha	Rh4AG129500 Rh4BG123300 Rh4CG136800 Rh4DG123000
rosa_wichuraiana	Rw4G010460 Rw5G038600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	191
AciI	CCGC	9 cut(s)	65, 86, 122, 169, 185, 203, 313, 319, 404
AclWI	GGATC	5 cut(s)	41, 83, 180, 295, 381
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	367
AfaI	GTAC	1 cut(s)	307
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	158, 258, 326
AluBI	AGCT	2 cut(s)	127, 213
AluI	AGCT	2 cut(s)	127, 213
AlwI	GGATC	5 cut(s)	41, 83, 180, 295, 381
AoxI	GGCC	2 cut(s)	12, 231
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	1 cut(s)	367
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	12, 292
AsuHPI	GGTGA	2 cut(s)	118, 191
AvaII	GGWCC	1 cut(s)	292
BbvI	GCAGC	1 cut(s)	388
BfaI	CTAG	1 cut(s)	92
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	12, 292
BmiI	GGNNCC	1 cut(s)	294
BmsI	GCATC	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse118I	RCCGGY	1 cut(s)	233
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	388
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	2 cut(s)	14, 233
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	102, 278
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmFI	GGGAC	2 cut(s)	102, 278
BsnI	GGCC	2 cut(s)	14, 233
Bsp143I	GATC	5 cut(s)	33, 75, 172, 300, 373
BspACI	CCGC	9 cut(s)	65, 86, 122, 169, 185, 203, 313, 319, 404
BspANI	GGCC	2 cut(s)	14, 233
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	294
BspPI	GGATC	5 cut(s)	41, 83, 180, 295, 381
BsrFI	RCCGGY	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	233
BssMI	GATC	5 cut(s)	33, 75, 172, 300, 373
BstC8I	GCNNGC	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	5 cut(s)	36, 78, 175, 303, 376
BstMBI	GATC	5 cut(s)	33, 75, 172, 300, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	388
BstX2I	RGATCY	2 cut(s)	300, 373
BstYI	RGATCY	2 cut(s)	300, 373
BsuRI	GGCC	2 cut(s)	14, 233
Cac8I	GCNNGC	1 cut(s)	187
CfoI	GCGC	1 cut(s)	191
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	2 cut(s)	12, 292
Csp6I	GTAC	1 cut(s)	306
CviAII	CATG	4 cut(s)	72, 148, 176, 195
CviJI	RGCY	5 cut(s)	14, 127, 213, 233, 401
CviKI_1	RGCY	5 cut(s)	14, 127, 213, 233, 401
CviQI	GTAC	1 cut(s)	306
DpnI	GATC	5 cut(s)	35, 77, 174, 302, 375
DpnII	GATC	5 cut(s)	33, 75, 172, 300, 373
EaeI	YGGCCR	1 cut(s)	231
EciI	GGCGGA	2 cut(s)	137, 218
Eco47I	GGWCC	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	367
FaeI	CATG	4 cut(s)	75, 151, 179, 198
FaiI	YATR	5 cut(s)	73, 149, 177, 196, 335
FaqI	GGGAC	2 cut(s)	102, 278
FatI	CATG	4 cut(s)	71, 147, 175, 194
FauI	CCCGC	4 cut(s)	79, 162, 178, 312
Fnu4HI	GCNGC	1 cut(s)	402
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	1 cut(s)	402
HaeIII	GGCC	2 cut(s)	14, 233
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	4 cut(s)	75, 151, 179, 198
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	2 cut(s)	118, 191
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	2 cut(s)	31, 47
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	1 cut(s)	41
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
Hsp92II	CATG	4 cut(s)	75, 151, 179, 198
HspAI	GCGC	1 cut(s)	189
Kzo9I	GATC	5 cut(s)	33, 75, 172, 300, 373
LmnI	GCTCC	2 cut(s)	124, 205
LpnPI	CCDG	3 cut(s)	16, 199, 247
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	2 cut(s)	53, 412
MalI	GATC	5 cut(s)	35, 77, 174, 302, 375
MboI	GATC	5 cut(s)	33, 75, 172, 300, 373
MflI	RGATCY	2 cut(s)	300, 373
MluCI	AATT	2 cut(s)	217, 367
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	5 cut(s)	25, 145, 159, 331, 411
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	219
NdeII	GATC	5 cut(s)	33, 75, 172, 300, 373
NlaIII	CATG	4 cut(s)	75, 151, 179, 198
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	158
PflFI	GACNNNGTC	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	2 cut(s)	12, 292
PsuI	RGATCY	2 cut(s)	300, 373
PsyI	GACNNNGTC	1 cut(s)	196
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
RseI	CAYNNNNRTG	1 cut(s)	227
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	5 cut(s)	33, 75, 172, 300, 373
Sau96I	GGNCC	2 cut(s)	12, 292
SetI	ASST	5 cut(s)	60, 129, 156, 215, 422
SfaNI	GCATC	1 cut(s)	231
SinI	GGWCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	217, 367
SsiI	CCGC	9 cut(s)	65, 86, 122, 169, 185, 203, 313, 319, 404
SspMI	CTAG	1 cut(s)	92
TaqI	TCGA	1 cut(s)	36
TaqII	GACCGA	1 cut(s)	280
TasI	AATT	2 cut(s)	217, 367
TfiI	GAWTC	1 cut(s)	158
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	412
TspGWI	ACGGA	1 cut(s)	293
Tth111I	GACNNNGTC	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	367
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.