Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003372

Physical Location & Seq

Genomic Coordinates Reverse (-)

702072 .. 703626

Gene Structure 1555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00740.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCCATCGTCTGTCGAGTTACGTTCCATTTGTCATTTAAACAGTGCAGTATGCTTCTTGAAATTGGAAAAGTATGAGGACGCAATCAAGGAATGCACGAAAGCGCTTGAACTAAATCCTTCGTATATGAAAGCTCTGCTTCGAAGAGCAGAAGCTCATGAAAAGCTCGAGCATTTTGAAGAGGCTATTGTTGATATGAAAAGTGTCTTGGAACTTGATCCTTCAAATGACCAAGCCAAAAAGGCCATTCGCCGGTTGGGGCCGCTAGCTGAAGAAAAGAGAGAAAAGATGAAAGAGGAGATGATAGGGAAGCTGAAAGAAATGGGCAATTCTCTCTTGGGCCGTTTTGGAATGAGCGTCGACAACTTTAAAGCTGTCAAAGATCCAAACACCGGCTCATATTCTCTTTCATTCCAACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

141

Amino Acids

15.95

Weight (kDa)

7.7

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30480 AT4G30480 AT4G30480
fragaria_vesca	FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_4g08690
malus_domestica	MD04G1009600.v1.1 MD16G1260600.v1.1
prunus_persica	Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.8G039000_v2.0.a1 Prupe.8G039000_v2.0.a1
pyrus_communis	pycom04g00740 pycom16g22830
rosa_chinensis	RchiOBHm_Chr4g0405181
rosa_laevigata	RLG00000008866
rosa_multiflora	Rmu_sc0004988.1_g000011 Rmu_ssc0000255.1_g000025
rosa_roxburghii	Rroxscaffold_5G00341850 Rroxscaffold_5G00349430
rosa_rugosa	Rorug04G0054700
rosa_samantha	Rh4AG129500 Rh4BG123300 Rh4CG136800 Rh4DG123000
rosa_wichuraiana	Rw4G010460 Rw5G038600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	360
AciI	CCGC	1 cut(s)	263
AclI	AACGTT	1 cut(s)	418
AclWI	GGATC	2 cut(s)	212, 377
AcuI	CTGAAG	1 cut(s)	291
AfeI	AGCGCT	1 cut(s)	105
AfiI	CCNNNNNNNGG	2 cut(s)	252, 392
AgsI	TTSAA	4 cut(s)	61, 110, 179, 225
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	6 cut(s)	134, 155, 166, 269, 313, 374
AluI	AGCT	6 cut(s)	134, 155, 166, 269, 313, 374
AlwI	GGATC	2 cut(s)	212, 377
Ama87I	CYCGRG	1 cut(s)	167
Aor51HI	AGCGCT	1 cut(s)	105
AoxI	GGCC	3 cut(s)	243, 260, 340
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	2 cut(s)	260, 340
AsuII	TTCGAA	1 cut(s)	142
AsuNHI	GCTAGC	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	167
BccI	CCATC	1 cut(s)	13
BceAI	ACGGC	1 cut(s)	327
BfaI	CTAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	107
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	2 cut(s)	260, 340
BmiI	GGNNCC	1 cut(s)	261
BmtI	GCTAGC	1 cut(s)	269
Bpu14I	TTCGAA	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 392
Bse118I	RCCGGY	2 cut(s)	252, 392
BseLI	CCNNNNNNNGG	2 cut(s)	252, 392
BseRI	GAGGAG	1 cut(s)	311
BsgI	GTGCAG	1 cut(s)	66
BshFI	GGCC	3 cut(s)	245, 262, 342
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	253, 393
BslI	CCNNNNNNNGG	2 cut(s)	252, 392
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	3 cut(s)	245, 262, 342
BsoBI	CYCGRG	1 cut(s)	167
Bsp119I	TTCGAA	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	217, 382
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	3 cut(s)	245, 262, 342
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	261
BspOI	GCTAGC	1 cut(s)	269
BspPI	GGATC	2 cut(s)	212, 377
BspQI	GCTCTTC	1 cut(s)	139
BspT104I	TTCGAA	1 cut(s)	142
BsrFI	RCCGGY	2 cut(s)	252, 392
BssAI	RCCGGY	2 cut(s)	252, 392
BssMI	GATC	2 cut(s)	217, 382
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	2 cut(s)	139, 174
BstBI	TTCGAA	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	267
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	2 cut(s)	220, 385
BstMBI	GATC	2 cut(s)	217, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	3 cut(s)	245, 262, 342
BtsIMutI	CAGTG	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	267
CciI	TCATGA	1 cut(s)	157
CfoI	GCGC	1 cut(s)	106
Cfr10I	RCCGGY	2 cut(s)	252, 392
Cfr13I	GGNCC	2 cut(s)	260, 340
CseI	GACGC	2 cut(s)	89, 346
CviAII	CATG	1 cut(s)	158
DpnI	GATC	2 cut(s)	219, 384
DpnII	GATC	2 cut(s)	217, 382
DraI	TTTAAA	2 cut(s)	39, 370
Eam1104I	CTCTTC	2 cut(s)	139, 174
EarI	CTCTTC	2 cut(s)	139, 174
Eco47III	AGCGCT	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	167
FaeI	CATG	1 cut(s)	161
FaiI	YATR	7 cut(s)	52, 75, 126, 128, 159, 197, 400
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	1 cut(s)	157
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	263
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	3 cut(s)	245, 262, 342
HapII	CCGG	2 cut(s)	253, 393
HgaI	GACGC	2 cut(s)	89, 346
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	1 cut(s)	161
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HpaII	CCGG	2 cut(s)	253, 393
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188III	TCNNGA	2 cut(s)	58, 158
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	2 cut(s)	129, 231
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	2 cut(s)	22, 418
HpyCH4V	TGCA	2 cut(s)	47, 96
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpySE526I	ACGT	2 cut(s)	22, 418
Hsp92II	CATG	1 cut(s)	161
HspAI	GCGC	1 cut(s)	104
Kzo9I	GATC	2 cut(s)	217, 382
LguI	GCTCTTC	1 cut(s)	139
LpnPI	CCDG	2 cut(s)	266, 406
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	2 cut(s)	22, 418
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	2 cut(s)	219, 384
MboI	GATC	2 cut(s)	217, 382
MboII	GAAGA	3 cut(s)	156, 191, 284
MflI	RGATCY	1 cut(s)	382
MluCI	AATT	2 cut(s)	62, 328
MnlI	CCTC	3 cut(s)	70, 175, 289
MseI	TTAA	2 cut(s)	38, 369
MspI	CCGG	2 cut(s)	253, 393
Mva1269I	GAATGC	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeII	GATC	2 cut(s)	217, 382
NheI	GCTAGC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	161
NlaIV	GGNNCC	1 cut(s)	261
NspV	TTCGAA	1 cut(s)	142
PaeR7I	CTCGAG	1 cut(s)	167
PagI	TCATGA	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	139
PctI	GAATGC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	264
Psp1406I	AACGTT	1 cut(s)	418
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	2 cut(s)	260, 340
PspXI	VCTCGAGB	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	382
SalI	GTCGAC	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	139
SaqAI	TTAA	2 cut(s)	38, 369
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	2 cut(s)	217, 382
Sau96I	GGNCC	2 cut(s)	260, 340
SetI	ASST	8 cut(s)	25, 136, 157, 168, 271, 315, 376, 421
Sfr274I	CTCGAG	1 cut(s)	167
SfuI	TTCGAA	1 cut(s)	142
SlaI	CTCGAG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	62, 328
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	1 cut(s)	266
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	2 cut(s)	25, 421
TaqI	TCGA	4 cut(s)	15, 142, 168, 360
TasI	AATT	2 cut(s)	62, 328
TauI	GCSGC	1 cut(s)	265
Tru1I	TTAA	2 cut(s)	38, 369
Tru9I	TTAA	2 cut(s)	38, 369
TscAI	CASTG	1 cut(s)	49
TspDTI	ATGAA	5 cut(s)	143, 174, 212, 305, 399
TspRI	CASTG	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XhoI	CTCGAG	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.