AT4G30480

tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003372
Physical Location & Seq
Forward (+)
14897346 .. 14899121
1776 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30480.2

Sequence Viewer

Length: 627 bp
ATGGTACTGATCGAATCAAGTGAGAGTGAAGACGAGATCCTCATCAAAAACGAACCAAAGCCAGCGTCTTCATCCTCACCGCAACCCACGGAGACGAAACAAGTCGACGGAGATGATTCCGATGGGTTCGAAACTGCCAGCGAACGTGAAATTAGCGATGAAGAAGGAGAGGAAGATGGTACCAAAAATGACGCCGTCACGAGTCAGGAGGAACCACAGCACTCGGAGAAGAAGGAAGAGCAGATTGAGCTAATGAGTGAAGGAGAAGCCATAGTCGACGACGGATCAAACAAGGAGAAAGCTTTGGCAGAAGCAAATGAGGCTAAAGCGGAAGGAAATAAACTGTTCGTTAATGGCCTTTATGAAGAAGCATTGTCAAAGTATGCTTTTGCTTTAGAGCTTGTTCAGGAGTTACCTGAGTCTATAGAGCTTCGATCCATATGCTATTTAAACAGAGGTGTATGTTTCCTCAAATTGGGTAAATGTGAAGAAACAATCAAGGAATGCACAAAAGCCTTAGAGCTAAATCCTACCTACAATAAGGCCTTGGTTCGAAGGGCTGAAGCACACGAGAAACTTGAACACTTCGAAGATGCTGTCACGGGTTTAGTGGAAGAGCCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_2 TPR_8

Protein Analysis

208

Amino Acids

23.13

Weight (kDa)

4.34

Isoelectric Point (pI)

66.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 148 - 179 3.1e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 179
AccB1I GGYRCC 1 cut(s) 179
AccI GTMKAC 2 cut(s) 105, 276
AciI CCGC 2 cut(s) 80, 329
AclWI GGATC 3 cut(s) 31, 292, 429
AcuI CTGAAG 1 cut(s) 582
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 2 cut(s) 6, 181
AfiI CCNNNNNNNGG 1 cut(s) 475
AgsI TTSAA 1 cut(s) 581
AluBI AGCT 5 cut(s) 250, 302, 400, 430, 523
AluI AGCT 5 cut(s) 250, 302, 400, 430, 523
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 3 cut(s) 31, 292, 429
AoxI GGCC 2 cut(s) 355, 543
ArsI GACNNNNNNTTYG 4 cut(s) 50, 82, 582, 614
Asp718I GGTACC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 69
AsuII TTCGAA 3 cut(s) 129, 553, 588
BanI GGYRCC 1 cut(s) 179
BauI CACGAG 2 cut(s) 199, 569
BbsI GAAGAC 2 cut(s) 36, 60
BccI CCATC 2 cut(s) 116, 170
BceAI ACGGC 1 cut(s) 179
BcgI CGANNNNNNTGC 2 cut(s) 423, 457
BcoDI GTCTC 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 423
BmiI GGNNCC 2 cut(s) 181, 213
BmsI GCATC 1 cut(s) 583
BpiI GAAGAC 2 cut(s) 36, 60
Bpu14I TTCGAA 3 cut(s) 129, 553, 588
BsaBI GATNNNNATC 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 87, 546
Bsc4I CCNNNNNNNGG 1 cut(s) 475
Bse8I GATNNNNATC 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 87, 546
BseGI GGATG 1 cut(s) 71
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 475
BseMII CTCAG 1 cut(s) 408
BshFI GGCC 2 cut(s) 357, 545
BshNI GGYRCC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 475
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 509
BsnI GGCC 2 cut(s) 357, 545
Bsp119I TTCGAA 3 cut(s) 129, 553, 588
Bsp143I GATC 4 cut(s) 9, 36, 284, 434
BspACI CCGC 2 cut(s) 80, 329
BspANI GGCC 2 cut(s) 357, 545
BspCNI CTCAG 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 181, 213
BspPI GGATC 3 cut(s) 31, 292, 429
BspQI GCTCTTC 2 cut(s) 231, 609
BspT104I TTCGAA 3 cut(s) 129, 553, 588
BspT107I GGYRCC 1 cut(s) 179
BssECI CCNNGG 2 cut(s) 87, 546
BssMI GATC 4 cut(s) 9, 36, 284, 434
BssNI GRCGYC 1 cut(s) 192
BssSI CACGAG 2 cut(s) 199, 569
BssT1I CCWWGG 1 cut(s) 546
Bst2BI CACGAG 2 cut(s) 199, 569
Bst4CI ACNGT 1 cut(s) 345
Bst6I CTCTTC 2 cut(s) 231, 609
BstACI GRCGYC 1 cut(s) 192
BstBI TTCGAA 3 cut(s) 129, 553, 588
BstC8I GCNNGC 2 cut(s) 63, 139
BstDEI CTNAG 2 cut(s) 417, 517
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 71
BstKTI GATC 4 cut(s) 12, 39, 287, 437
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 4 cut(s) 9, 36, 284, 434
BstMWI GCNNNNNNNGC 2 cut(s) 247, 320
BstSFI CTRYAG 1 cut(s) 423
BstV2I GAAGAC 2 cut(s) 36, 60
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 2 cut(s) 357, 545
BtgI CCRYGG 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 1 cut(s) 71
Cac8I GCNNGC 2 cut(s) 63, 139
CseI GACGC 2 cut(s) 54, 200
Csp6I GTAC 2 cut(s) 5, 180
CviQI GTAC 2 cut(s) 5, 180
DdeI CTNAG 2 cut(s) 417, 517
DpnI GATC 4 cut(s) 11, 38, 286, 436
DpnII GATC 4 cut(s) 9, 36, 284, 434
DraI TTTAAA 1 cut(s) 450
Eam1104I CTCTTC 2 cut(s) 231, 609
EarI CTCTTC 2 cut(s) 231, 609
Eco130I CCWWGG 1 cut(s) 546
Eco147I AGGCCT 1 cut(s) 545
Eco57I CTGAAG 1 cut(s) 582
EcoT14I CCWWGG 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 546
Esp3I CGTCTC 1 cut(s) 86
FaiI YATR 8 cut(s) 272, 363, 384, 425, 440, 442, 463, 622
FauNDI CATATG 1 cut(s) 440
FblI GTMKAC 2 cut(s) 105, 276
FokI GGATG 1 cut(s) 58
HaeIII GGCC 2 cut(s) 357, 545
HgaI GACGC 2 cut(s) 54, 200
Hin1I GRCGYC 1 cut(s) 192
HincII GTYRAC 2 cut(s) 106, 277
HindII GTYRAC 2 cut(s) 106, 277
HindIII AAGCTT 1 cut(s) 300
HinfI GANTC 4 cut(s) 14, 116, 202, 419
HphI GGTGA 1 cut(s) 69
Hpy166II GTNNAC 2 cut(s) 106, 277
Hpy188I TCNGA 2 cut(s) 121, 226
Hpy188III TCNNGA 3 cut(s) 199, 206, 407
Hpy8I GTNNAC 2 cut(s) 106, 277
Hpy99I CGWCG 3 cut(s) 110, 281, 284
HpyAV CCTTC 5 cut(s) 158, 226, 254, 326, 549
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 507
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 320
HpyF3I CTNAG 2 cut(s) 417, 517
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 192
KpnI GGTACC 1 cut(s) 183
Kzo9I GATC 4 cut(s) 9, 36, 284, 434
LguI GCTCTTC 2 cut(s) 231, 609
LpnPI CCDG 5 cut(s) 75, 151, 191, 392, 429
LweI GCATC 1 cut(s) 583
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 3 cut(s) 196, 411, 598
MalI GATC 4 cut(s) 11, 38, 286, 436
MboI GATC 4 cut(s) 9, 36, 284, 434
MflI RGATCY 1 cut(s) 36
MluCI AATT 2 cut(s) 150, 473
MlyI GAGTC 2 cut(s) 211, 428
MnlI CCTC 7 cut(s) 50, 85, 163, 202, 313, 449, 479
MseI TTAA 2 cut(s) 351, 449
Mva1269I GAATGC 1 cut(s) 509
MwoI GCNNNNNNNGC 2 cut(s) 247, 320
NdeI CATATG 1 cut(s) 440
NdeII GATC 4 cut(s) 9, 36, 284, 434
NlaIV GGNNCC 2 cut(s) 181, 213
NmuCI GTSAC 2 cut(s) 196, 598
NspV TTCGAA 3 cut(s) 129, 553, 588
PceI AGGCCT 1 cut(s) 545
PciSI GCTCTTC 2 cut(s) 231, 609
PctI GAATGC 1 cut(s) 509
PfeI GAWTC 2 cut(s) 14, 116
PflFI GACNNNGTC 1 cut(s) 194
PleI GAGTC 2 cut(s) 210, 427
PpsI GAGTC 2 cut(s) 210, 427
PspN4I GGNNCC 2 cut(s) 181, 213
PsuI RGATCY 1 cut(s) 36
PsyI GACNNNGTC 1 cut(s) 194
RsaI GTAC 2 cut(s) 6, 181
RsaNI GTAC 2 cut(s) 5, 180
SalI GTCGAC 2 cut(s) 104, 275
SapI GCTCTTC 2 cut(s) 231, 609
SaqAI TTAA 2 cut(s) 351, 449
Sau3AI GATC 4 cut(s) 9, 36, 284, 434
SchI GAGTC 2 cut(s) 211, 428
SetI ASST 9 cut(s) 148, 252, 304, 402, 418, 432, 460, 525, 536
SfaNI GCATC 1 cut(s) 583
SfcI CTRYAG 1 cut(s) 423
SfuI TTCGAA 3 cut(s) 129, 553, 588
Sse9I AATT 2 cut(s) 150, 473
SseBI AGGCCT 1 cut(s) 545
SsiI CCGC 2 cut(s) 80, 329
StuI AGGCCT 1 cut(s) 545
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 1 cut(s) 345
TaiI ACGT 1 cut(s) 148
TaqI TCGA 7 cut(s) 12, 105, 129, 276, 433, 553, 588
TasI AATT 2 cut(s) 150, 473
TfiI GAWTC 2 cut(s) 14, 116
Tru1I TTAA 2 cut(s) 351, 449
Tru9I TTAA 2 cut(s) 351, 449
TseFI GTSAC 2 cut(s) 196, 598
Tsp45I GTSAC 2 cut(s) 196, 598
TspDTI ATGAA 3 cut(s) 60, 174, 378
TspGWI ACGGA 3 cut(s) 104, 123, 297
Tth111I GACNNNGTC 1 cut(s) 194
XmiI GTMKAC 2 cut(s) 105, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.