RchiOBHm_Chr4g0405181

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003372
Physical Location & Seq
Forward (+)
25356874 .. 25360098
3225 bp
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UTR
Exon/CDS
Intron
PRQ37668

Sequence Viewer

Length: 729 bp
ATGCTTATAGAAGAAGAAAAGGAAGAAGAGCACAATGTGAAGACCCCAAAACCCTCGTCGTCCTCCGCCAACAAAGACGCCGCCGATGGCTTCGAAACTGCCAGCGACGGCGAGTTGGGACCGAACGAAAGCGACGATGAAACTCAACACCACGTCCAGCTTGAAGAGACGGATGACCTTGCATTCAAACAGAAATCGCTTGAGCAAGCAAATGAGGTAAAATTGGAAGGCAATGGACTGTTTGGGAATGGACACTATGAAGAGGCATTGTCGAAGTATGAACTTGCTTTACAGCTTGCGCCGGACATGCCTTCATCTGTGGAATTACGTTCCATATGTCATTCGAACCGTGCCATATGCTTTTCGAAGCTGGGAAAATACGACGACGCGGTTAAGGAATTCACAAAAGCACTGGAACTAAATCCTTCATATATGAAAGCGCTGATTAGAAGAGCAGAAGCTCATGAAAAACTAGAACATTTCGAAGAGGCTATTGCTGATATGAAAAAAATCTTAGAACTTGATCCTTCAAATGACCAAGCCAGGAAGGCCATTCGGCGCTTGGAGCCACTTGCTGAAGCAAAGAGAGAAAAGATGAAAGAGGAGATGATTGGGAAGTTGAAAGATATGGGCAACTCGTTGTTGGGCCGGTTTGGAATGAGCGTTGACAACTTCAAAGCTGTAAAAGATCCAAACACTGGCTCGTATTCTGTTTCATTCCAACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_2 TPR_8

Protein Analysis

242

Amino Acids

27.19

Weight (kDa)

5.06

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_2 PF07719 113 - 143 3.7e-07 Tetratricopeptide repeat
TPR_1 PF00515 113 - 144 3.1e-09 Tetratricopeptide repeat
TPR_16 PF13432 123 - 178 2.2e-08 Tetratricopeptide repeat
TPR_19 PF14559 125 - 187 2.7e-07 Tetratricopeptide repeat
TPR_2 PF07719 146 - 178 2.3e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 698
AccII CGCG 1 cut(s) 389
AciI CCGC 3 cut(s) 66, 81, 389
AclI AACGTT 1 cut(s) 724
AclWI GGATC 2 cut(s) 518, 683
AcsI RAATTY 1 cut(s) 398
AcuI CTGAAG 1 cut(s) 597
AcyI GRCGYC 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 37
AfeI AGCGCT 1 cut(s) 441
AfiI CCNNNNNNNGG 1 cut(s) 698
AgsI TTSAA 5 cut(s) 164, 187, 531, 622, 676
AjiI CACGTC 1 cut(s) 154
AjnI CCWGG 1 cut(s) 542
AluBI AGCT 5 cut(s) 160, 295, 370, 461, 680
AluI AGCT 5 cut(s) 160, 295, 370, 461, 680
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 2 cut(s) 518, 683
Aor51HI AGCGCT 1 cut(s) 441
AoxI GGCC 2 cut(s) 549, 646
ApoI RAATTY 1 cut(s) 398
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
AspLEI GCGC 3 cut(s) 301, 442, 561
AspS9I GGNCC 2 cut(s) 119, 646
AsuII TTCGAA 4 cut(s) 93, 344, 365, 483
AvaII GGWCC 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 33
BccI CCATC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 544
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 1 cut(s) 473
BfoI RGCGCY 2 cut(s) 443, 562
BglI GCCNNNNNGGC 1 cut(s) 548
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 544
Bme18I GGWCC 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 119, 646
BmiI GGNNCC 2 cut(s) 120, 567
BmrFI CCNGG 1 cut(s) 544
BpiI GAAGAC 1 cut(s) 47
Bpu14I TTCGAA 4 cut(s) 93, 344, 365, 483
BpuEI CTTGAG 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 698
Bse118I RCCGGY 1 cut(s) 648
Bse1I ACTGG 2 cut(s) 417, 703
Bse3DI GCAATG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 544
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 698
BseMI GCAATG 1 cut(s) 238
BseNI ACTGG 2 cut(s) 417, 703
BseRI GAGGAG 1 cut(s) 617
BseYI CCCAGC 1 cut(s) 370
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 2 cut(s) 551, 648
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 2 cut(s) 302, 649
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 698
BsmAI GTCTC 1 cut(s) 161
BsmBI CGTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 132
BsmI GAATGC 1 cut(s) 182
BsnI GGCC 2 cut(s) 551, 648
Bsp119I TTCGAA 4 cut(s) 93, 344, 365, 483
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 2 cut(s) 523, 688
BspACI CCGC 3 cut(s) 66, 81, 389
BspANI GGCC 2 cut(s) 551, 648
BspFNI CGCG 1 cut(s) 389
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 2 cut(s) 120, 567
BspPI GGATC 2 cut(s) 518, 683
BspQI GCTCTTC 2 cut(s) 21, 445
BspT104I TTCGAA 4 cut(s) 93, 344, 365, 483
BsrDI GCAATG 1 cut(s) 238
BsrFI RCCGGY 1 cut(s) 648
BsrI ACTGG 2 cut(s) 417, 703
BssAI RCCGGY 1 cut(s) 648
BssMI GATC 2 cut(s) 523, 688
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 544
Bst4CI ACNGT 2 cut(s) 240, 350
Bst6I CTCTTC 5 cut(s) 21, 159, 255, 445, 480
BstACI GRCGYC 1 cut(s) 78
BstBI TTCGAA 4 cut(s) 93, 344, 365, 483
BstC8I GCNNGC 3 cut(s) 103, 207, 297
BstDEI CTNAG 1 cut(s) 514
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 389
BstH2I RGCGCY 2 cut(s) 443, 562
BstHHI GCGC 3 cut(s) 301, 442, 561
BstKTI GATC 2 cut(s) 526, 691
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 2 cut(s) 523, 688
BstMWI GCNNNNNNNGC 3 cut(s) 307, 548, 565
BstNI CCWGG 1 cut(s) 544
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 542
BstUI CGCG 1 cut(s) 389
BstV2I GAAGAC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 688
BstYI RGATCY 1 cut(s) 688
BsuRI GGCC 2 cut(s) 551, 648
BtrI CACGTC 1 cut(s) 154
BtsCI GGATG 1 cut(s) 178
BtsIMutI CAGTG 2 cut(s) 410, 696
Cac8I GCNNGC 3 cut(s) 103, 207, 297
CciI TCATGA 1 cut(s) 463
CfoI GCGC 3 cut(s) 301, 442, 561
Cfr10I RCCGGY 1 cut(s) 648
Cfr13I GGNCC 2 cut(s) 119, 646
CseI GACGC 2 cut(s) 86, 395
CviAII CATG 2 cut(s) 307, 464
DdeI CTNAG 1 cut(s) 514
DpnI GATC 2 cut(s) 525, 690
DpnII GATC 2 cut(s) 523, 688
DraIII CACNNNGTG 1 cut(s) 37
Eam1104I CTCTTC 5 cut(s) 21, 159, 255, 445, 480
EarI CTCTTC 5 cut(s) 21, 159, 255, 445, 480
EciI GGCGGA 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 119
Eco47III AGCGCT 1 cut(s) 441
Eco57I CTGAAG 1 cut(s) 597
EcoRI GAATTC 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 542
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 2 cut(s) 310, 467
FaqI GGGAC 1 cut(s) 132
FatI CATG 2 cut(s) 306, 463
FauNDI CATATG 2 cut(s) 335, 356
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 473
GlaI GCGC 3 cut(s) 300, 441, 560
GluI GCNGC 1 cut(s) 81
GsaI CCCAGC 1 cut(s) 374
HaeII RGCGCY 2 cut(s) 443, 562
HaeIII GGCC 2 cut(s) 551, 648
HapII CCGG 2 cut(s) 302, 649
HgaI GACGC 2 cut(s) 86, 395
HhaI GCGC 3 cut(s) 301, 442, 561
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 310, 467
Hin6I GCGC 3 cut(s) 299, 440, 559
HinP1I GCGC 3 cut(s) 299, 440, 559
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HpaII CCGG 2 cut(s) 302, 649
Hpy166II GTNNAC 1 cut(s) 667
Hpy188III TCNNGA 1 cut(s) 464
Hpy8I GTNNAC 1 cut(s) 667
Hpy99I CGWCG 5 cut(s) 61, 110, 137, 386, 389
HpyAV CCTTC 5 cut(s) 221, 321, 435, 537, 541
HpyCH4III ACNGT 2 cut(s) 240, 350
HpyCH4IV ACGT 3 cut(s) 153, 328, 724
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 3 cut(s) 307, 548, 565
HpyF3I CTNAG 1 cut(s) 514
HpySE526I ACGT 3 cut(s) 153, 328, 724
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 310, 467
HspAI GCGC 3 cut(s) 299, 440, 559
Kzo9I GATC 2 cut(s) 523, 688
LguI GCTCTTC 2 cut(s) 21, 445
LmnI GCTCC 1 cut(s) 565
LpnPI CCDG 9 cut(s) 115, 170, 315, 356, 398, 529, 556, 662, 684
MaeI CTAG 1 cut(s) 473
MaeII ACGT 3 cut(s) 153, 328, 724
MalI GATC 2 cut(s) 525, 690
MboI GATC 2 cut(s) 523, 688
MboII GAAGA 9 cut(s) 23, 26, 35, 38, 52, 176, 272, 462, 497
MflI RGATCY 1 cut(s) 688
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 3 cut(s) 221, 323, 398
MnlI CCTC 6 cut(s) 64, 73, 208, 256, 481, 595
MseI TTAA 1 cut(s) 393
MspI CCGG 2 cut(s) 302, 649
MspR9I CCNGG 1 cut(s) 544
Mva1269I GAATGC 1 cut(s) 182
MvaI CCWGG 1 cut(s) 544
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 3 cut(s) 307, 548, 565
NdeI CATATG 2 cut(s) 335, 356
NdeII GATC 2 cut(s) 523, 688
NlaIII CATG 2 cut(s) 310, 467
NlaIV GGNNCC 2 cut(s) 120, 567
NspI RCATGY 1 cut(s) 310
NspV TTCGAA 4 cut(s) 93, 344, 365, 483
PagI TCATGA 1 cut(s) 463
PciSI GCTCTTC 2 cut(s) 21, 445
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PctI GAATGC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 698
PkrI GCNGC 1 cut(s) 82
Psp1406I AACGTT 1 cut(s) 724
Psp6I CCWGG 1 cut(s) 542
PspFI CCCAGC 1 cut(s) 370
PspGI CCWGG 1 cut(s) 542
PspN4I GGNNCC 2 cut(s) 120, 567
PspPI GGNCC 2 cut(s) 119, 646
PsrI GAACNNNNNNTAC 2 cut(s) 273, 305
PsuI RGATCY 1 cut(s) 688
SapI GCTCTTC 2 cut(s) 21, 445
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 2 cut(s) 523, 688
Sau96I GGNCC 2 cut(s) 119, 646
ScrFI CCNGG 1 cut(s) 544
SduI GDGCHC 1 cut(s) 33
SfuI TTCGAA 4 cut(s) 93, 344, 365, 483
SinI GGWCC 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 3 cut(s) 221, 323, 398
SsiI CCGC 3 cut(s) 66, 81, 389
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 1 cut(s) 542
TaaI ACNGT 2 cut(s) 240, 350
TaiI ACGT 3 cut(s) 156, 331, 727
TaqI TCGA 5 cut(s) 93, 272, 344, 365, 483
TaqII GACCGA 1 cut(s) 136
TasI AATT 3 cut(s) 221, 323, 398
TauI GCSGC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 2 cut(s) 417, 703
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 2 cut(s) 417, 703
Van91I CCANNNNNTGG 1 cut(s) 698
VpaK11BI GGWCC 1 cut(s) 119
XapI RAATTY 1 cut(s) 398
XceI RCATGY 1 cut(s) 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XspI CTAG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.