Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003372

Physical Location & Seq

Genomic Coordinates Reverse (-)

1098077 .. 1100561

Gene Structure 2485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1009600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCTGATAAAGGAAGAAGAAGAAGAGAATGGATGCCGTAGCGATATGAATCCCCCAAAGCCCTCCTCCTCCTCCTCTTCCACCGCCACCAACAGAGATGCCTCCGATGGCTTCGAAACCGCCAGCGACGGCGAACTCAACGACGACGAAATCCCTCAACAACTCCATCTCCAAGACGAGCCACAACAAACTCCCTCCCAGAACGACGACGTTGAATCGAATCAGAAAGCGTTTGAAGAAGCAAGTGATGTGAAAATTGAAGGCAATAGACTGTTTGGCAGTGGGCAATACCAAGAGGCATTATCCCAGTACGAGCTTGCTTTACACCTTGCACCTGACATGCCATCGTCTGTCGAATTACGTTCCATTTGTCATTTAAACAGCGCAGTATGCTTCTTGAAATTGGAAAAGTATGAGGACGCAATCAAGGAATGCACGAAAGCGCTTGAACTAAATCCTTCGTATATGAAAGCTCTGCTTCGAAGAGCAGAAGCTCATGAAAAGCTCGAGCATTTTGAAGAGGCTATTGTTGATATGAAAAGTGTCTTGGAACTTGATCCTTCAAATGACCAAGCCAAAAAGGCTATTCGCCGGTTGGGGCCGCTAGCTGAAGAAAAGAAAGAAAAGATGAAAGAGGAGATGATAGGGAAGCTGAAAGAAATGGGCAATTCTCTCTTGGGCCGTTTTGGAATGAGCGTCGACAACTTTAAAGCTGTCAAAGATCCAAACACTGGCTCATATTCTCTTTCATTCCAACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

254

Amino Acids

28.36

Weight (kDa)

4.76

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	124 - 155	1.6e-07	Tetratricopeptide repeat
TPR_19	PF14559	133 - 198	3.6e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30480 AT4G30480 AT4G30480
fragaria_vesca	FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_4g08690
malus_domestica	MD04G1009600.v1.1 MD16G1260600.v1.1
prunus_persica	Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.8G039000_v2.0.a1 Prupe.8G039000_v2.0.a1
pyrus_communis	pycom04g00740 pycom16g22830
rosa_chinensis	RchiOBHm_Chr4g0405181
rosa_laevigata	RLG00000008866
rosa_multiflora	Rmu_sc0004988.1_g000011 Rmu_ssc0000255.1_g000025
rosa_roxburghii	Rroxscaffold_5G00341850 Rroxscaffold_5G00349430
rosa_rugosa	Rorug04G0054700
rosa_samantha	Rh4AG129500 Rh4BG123300 Rh4CG136800 Rh4DG123000
rosa_wichuraiana	Rw4G010460 Rw5G038600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	731
AccI	GTMKAC	1 cut(s)	699
AciI	CCGC	3 cut(s)	84, 120, 602
AclI	AACGTT	1 cut(s)	757
AclWI	GGATC	2 cut(s)	551, 716
AcuI	CTGAAG	1 cut(s)	630
AfaI	GTAC	1 cut(s)	311
AfeI	AGCGCT	1 cut(s)	444
AfiI	CCNNNNNNNGG	1 cut(s)	731
AgsI	TTSAA	7 cut(s)	215, 236, 260, 400, 449, 518, 564
AjuI	GAANNNNNNNTTGG	2 cut(s)	530, 562
AluBI	AGCT	7 cut(s)	316, 473, 494, 505, 608, 652, 713
AluI	AGCT	7 cut(s)	316, 473, 494, 505, 608, 652, 713
AlwI	GGATC	2 cut(s)	551, 716
Ama87I	CYCGRG	1 cut(s)	506
Aor51HI	AGCGCT	1 cut(s)	444
AoxI	GGCC	2 cut(s)	599, 679
AspLEI	GCGC	2 cut(s)	386, 445
AspS9I	GGNCC	2 cut(s)	599, 679
AsuII	TTCGAA	2 cut(s)	114, 481
AsuNHI	GCTAGC	1 cut(s)	604
AvaI	CYCGRG	1 cut(s)	506
BccI	CCATC	3 cut(s)	101, 174, 352
BceAI	ACGGC	3 cut(s)	21, 145, 666
BfaI	CTAG	1 cut(s)	605
BfoI	RGCGCY	1 cut(s)	446
BglI	GCCNNNNNGGC	1 cut(s)	581
BisI	GCNGC	1 cut(s)	602
BlsI	GCNGC	1 cut(s)	603
BmeT110I	CYCGRG	1 cut(s)	506
BmgT120I	GGNCC	2 cut(s)	599, 679
BmiI	GGNNCC	1 cut(s)	600
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	2 cut(s)	23, 88
BmtI	GCTAGC	1 cut(s)	608
BmuI	ACTGGG	1 cut(s)	301
Bpu14I	TTCGAA	2 cut(s)	114, 481
BsaBI	GATNNNNATC	1 cut(s)	48
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	1 cut(s)	731
Bse118I	RCCGGY	1 cut(s)	591
Bse1I	ACTGG	2 cut(s)	307, 736
Bse8I	GATNNNNATC	1 cut(s)	48
BseGI	GGATG	1 cut(s)	38
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	731
BseNI	ACTGG	2 cut(s)	307, 736
BseRI	GAGGAG	5 cut(s)	55, 58, 61, 64, 650
BshFI	GGCC	2 cut(s)	601, 681
BsiHKCI	CYCGRG	1 cut(s)	506
BsiSI	CCGG	1 cut(s)	592
BslI	CCNNNNNNNGG	1 cut(s)	731
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	601, 681
BsoBI	CYCGRG	1 cut(s)	506
Bsp119I	TTCGAA	2 cut(s)	114, 481
Bsp143I	GATC	2 cut(s)	556, 721
BspACI	CCGC	3 cut(s)	84, 120, 602
BspANI	GGCC	2 cut(s)	601, 681
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	1 cut(s)	600
BspOI	GCTAGC	1 cut(s)	608
BspPI	GGATC	2 cut(s)	551, 716
BspQI	GCTCTTC	1 cut(s)	478
BspT104I	TTCGAA	2 cut(s)	114, 481
BsrFI	RCCGGY	1 cut(s)	591
BsrI	ACTGG	2 cut(s)	307, 736
BssAI	RCCGGY	1 cut(s)	591
BssMI	GATC	2 cut(s)	556, 721
Bst4CI	ACNGT	1 cut(s)	273
Bst6I	CTCTTC	4 cut(s)	18, 82, 478, 513
BstBI	TTCGAA	2 cut(s)	114, 481
BstC8I	GCNNGC	3 cut(s)	124, 318, 606
BstF5I	GGATG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	2 cut(s)	386, 445
BstKTI	GATC	2 cut(s)	559, 724
BstMBI	GATC	2 cut(s)	556, 721
BstMWI	GCNNNNNNNGC	2 cut(s)	390, 581
BstNSI	RCATGY	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	721
BsuRI	GGCC	2 cut(s)	601, 681
BtsCI	GGATG	1 cut(s)	38
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	2 cut(s)	286, 729
Cac8I	GCNNGC	3 cut(s)	124, 318, 606
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	2 cut(s)	386, 445
Cfr10I	RCCGGY	1 cut(s)	591
Cfr13I	GGNCC	2 cut(s)	599, 679
CseI	GACGC	2 cut(s)	428, 685
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	2 cut(s)	340, 497
CviQI	GTAC	1 cut(s)	310
DpnI	GATC	2 cut(s)	558, 723
DpnII	GATC	2 cut(s)	556, 721
DraI	TTTAAA	2 cut(s)	378, 709
Eam1104I	CTCTTC	4 cut(s)	18, 82, 478, 513
EarI	CTCTTC	4 cut(s)	18, 82, 478, 513
Eco47III	AGCGCT	1 cut(s)	444
Eco57I	CTGAAG	1 cut(s)	630
Eco88I	CYCGRG	1 cut(s)	506
FaeI	CATG	2 cut(s)	343, 500
FaiI	YATR	9 cut(s)	47, 341, 391, 414, 465, 467, 498, 536, 739
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FatI	CATG	2 cut(s)	339, 496
FblI	GTMKAC	1 cut(s)	699
Fnu4HI	GCNGC	1 cut(s)	602
FokI	GGATG	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	602
FspBI	CTAG	1 cut(s)	605
GlaI	GCGC	2 cut(s)	385, 444
GluI	GCNGC	1 cut(s)	602
HaeII	RGCGCY	1 cut(s)	446
HaeIII	GGCC	2 cut(s)	601, 681
HapII	CCGG	1 cut(s)	592
HgaI	GACGC	2 cut(s)	428, 685
HhaI	GCGC	2 cut(s)	386, 445
Hin1II	CATG	2 cut(s)	343, 500
Hin6I	GCGC	2 cut(s)	384, 443
HinP1I	GCGC	2 cut(s)	384, 443
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	3 cut(s)	49, 215, 220
HpaII	CCGG	1 cut(s)	592
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	2 cut(s)	106, 225
Hpy188III	TCNNGA	2 cut(s)	397, 497
Hpy8I	GTNNAC	1 cut(s)	700
Hpy99I	CGWCG	6 cut(s)	131, 146, 149, 209, 212, 701
HpyAV	CCTTC	3 cut(s)	254, 468, 570
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4IV	ACGT	3 cut(s)	210, 361, 757
HpyCH4V	TGCA	2 cut(s)	332, 435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	390, 581
HpySE526I	ACGT	3 cut(s)	210, 361, 757
Hsp92II	CATG	2 cut(s)	343, 500
HspAI	GCGC	2 cut(s)	384, 443
Kzo9I	GATC	2 cut(s)	556, 721
LguI	GCTCTTC	1 cut(s)	478
LpnPI	CCDG	6 cut(s)	136, 212, 320, 348, 605, 717
LweI	GCATC	2 cut(s)	23, 88
MaeI	CTAG	1 cut(s)	605
MaeII	ACGT	3 cut(s)	210, 361, 757
MalI	GATC	2 cut(s)	558, 723
MboI	GATC	2 cut(s)	556, 721
MboII	GAAGA	9 cut(s)	26, 29, 32, 35, 69, 248, 495, 530, 623
MflI	RGATCY	1 cut(s)	721
MluCI	AATT	4 cut(s)	255, 356, 401, 667
MseI	TTAA	2 cut(s)	377, 708
MspI	CCGG	1 cut(s)	592
Mva1269I	GAATGC	1 cut(s)	437
MwoI	GCNNNNNNNGC	2 cut(s)	390, 581
NdeII	GATC	2 cut(s)	556, 721
NheI	GCTAGC	1 cut(s)	604
NlaIII	CATG	2 cut(s)	343, 500
NlaIV	GGNNCC	1 cut(s)	600
NspI	RCATGY	1 cut(s)	343
NspV	TTCGAA	2 cut(s)	114, 481
PaeR7I	CTCGAG	1 cut(s)	506
PagI	TCATGA	1 cut(s)	496
PciSI	GCTCTTC	1 cut(s)	478
PctI	GAATGC	1 cut(s)	437
PfeI	GAWTC	3 cut(s)	49, 215, 220
PflMI	CCANNNNNTGG	1 cut(s)	731
PkrI	GCNGC	1 cut(s)	603
Psp1406I	AACGTT	1 cut(s)	757
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	2 cut(s)	599, 679
PspXI	VCTCGAGB	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	721
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SalI	GTCGAC	1 cut(s)	698
SapI	GCTCTTC	1 cut(s)	478
SaqAI	TTAA	2 cut(s)	377, 708
SatI	GCNGC	1 cut(s)	602
Sau3AI	GATC	2 cut(s)	556, 721
Sau96I	GGNCC	2 cut(s)	599, 679
SfaNI	GCATC	2 cut(s)	23, 88
Sfr274I	CTCGAG	1 cut(s)	506
SfuI	TTCGAA	2 cut(s)	114, 481
SlaI	CTCGAG	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	4 cut(s)	255, 356, 401, 667
SsiI	CCGC	3 cut(s)	84, 120, 602
SspMI	CTAG	1 cut(s)	605
TaaI	ACNGT	1 cut(s)	273
TaiI	ACGT	3 cut(s)	213, 364, 760
TaqI	TCGA	6 cut(s)	114, 218, 354, 481, 507, 699
TasI	AATT	4 cut(s)	255, 356, 401, 667
TauI	GCSGC	1 cut(s)	604
TfiI	GAWTC	3 cut(s)	49, 215, 220
Tru1I	TTAA	2 cut(s)	377, 708
Tru9I	TTAA	2 cut(s)	377, 708
TscAI	CASTG	2 cut(s)	286, 736
TspDTI	ATGAA	6 cut(s)	62, 482, 513, 551, 644, 738
TspRI	CASTG	2 cut(s)	286, 736
Van91I	CCANNNNNTGG	1 cut(s)	731
XceI	RCATGY	1 cut(s)	343
XhoI	CTCGAG	1 cut(s)	506
XmiI	GTMKAC	1 cut(s)	699
XspI	CTAG	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.