Rh4BG123300

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003372
Physical Location & Seq
Forward (+)
20663698 .. 20667152
3455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG123300.1

Sequence Viewer

Length: 819 bp
ATGCTTATAGAAGAAGAAAAGGAAGAAGAGCACAATGTGAAGACCCCAAAACCCTCGTCGTCCTCCGCCAACAGAGACGCCGCCGATGGCTTCGAAACTGCCAGCGACGGCGAGTTGGGGCCCAACGAAAGCGACGATGAAACTCGACACCCCGTCCAACCTGAAGAGACGGATGACCTTGCATTCAAACAGAAATCGCTTGAGCAAGCAAATGAGGTAAAATTGGAAGGCAATGGACTGTTTGGGAATGGACAATATGAAGAGGCATTGTCGCAGTATGAACTTGCTTTACAGCTTGCGCCGGACATGCCTTCATCTGTGGAATTACGTTCCATATGTCATTCAAACCGTGCCATATGCTTTTCGAAGCTGGGAAAATACGACGACGCGGTTAAGGAATGCACAAAAGCACTGGAACTAAATCCTTCATATATGAAAGCGCTGATTAGAAGAGCAGAAGCTCATGAAAAACTAGAACATTTCGAAGAGGCTATTGCTGATATGAAAAAAATCTTAGAACTTGATCCTTCAAATGACCAAGCCAGGAAGGCCATTCGGCGCTTGGAGCCACTTGCTGAAGCAAAGAGAGAAAAGATGAAAGAGGAGATGATTGGGAAGTTGAAAGATATGGGCAACTCGTTGTTGGGCCGGTTTGGAATGAGCGTTGACAACTTCAAAGCTGCTCCTGAATTATTTTGGAGTGTTCAGCCAACATTGTGTACTTGTATGAAGCACACAAAAGATCCAAAAGCATTGCCAAATGCTTCTCATCAAGTCATCCTCTTCGATAGCCTCATATTGGCAATCCCAGTATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_2 TPR_8

Protein Analysis

272

Amino Acids

30.42

Weight (kDa)

5.02

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 113 - 144 4.2e-09 Tetratricopeptide repeat
TPR_2 PF07719 113 - 143 2.5e-06 Tetratricopeptide repeat
TPR_16 PF13432 123 - 178 1.6e-06 Tetratricopeptide repeat
TPR_19 PF14559 125 - 187 7.8e-07 Tetratricopeptide repeat
TPR_2 PF07719 146 - 178 2.7e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 389
AciI CCGC 3 cut(s) 66, 81, 389
AclWI GGATC 2 cut(s) 518, 737
AcuI CTGAAG 2 cut(s) 183, 597
AcyI GRCGYC 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 37
AfaI GTAC 1 cut(s) 721
AfeI AGCGCT 1 cut(s) 441
AfiI CCNNNNNNNGG 1 cut(s) 799
AgsI TTSAA 5 cut(s) 187, 345, 531, 622, 676
AhdI GACNNNNNGTC 1 cut(s) 152
AjnI CCWGG 1 cut(s) 542
AluBI AGCT 4 cut(s) 295, 370, 461, 680
AluI AGCT 4 cut(s) 295, 370, 461, 680
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 2 cut(s) 69, 161
AlwI GGATC 2 cut(s) 518, 737
Aor51HI AGCGCT 1 cut(s) 441
AoxI GGCC 3 cut(s) 119, 549, 646
ApaI GGGCCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 680
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
AspLEI GCGC 3 cut(s) 301, 442, 561
AspS9I GGNCC 3 cut(s) 119, 120, 646
AsuII TTCGAA 3 cut(s) 93, 365, 483
BaeGI GKGCMC 1 cut(s) 123
BanII GRGCYC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 667
BccI CCATC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 544
BcoDI GTCTC 2 cut(s) 69, 161
BfaI CTAG 1 cut(s) 473
BfoI RGCGCY 2 cut(s) 443, 562
BglI GCCNNNNNGGC 1 cut(s) 548
BisI GCNGC 2 cut(s) 81, 681
BlsI GCNGC 2 cut(s) 82, 682
Bme1390I CCNGG 1 cut(s) 544
BmeRI GACNNNNNGTC 1 cut(s) 152
BmgT120I GGNCC 3 cut(s) 119, 120, 646
BmiI GGNNCC 3 cut(s) 120, 121, 567
BmrFI CCNGG 1 cut(s) 544
BmrI ACTGGG 1 cut(s) 803
BmuI ACTGGG 1 cut(s) 803
BpiI GAAGAC 1 cut(s) 47
Bpu14I TTCGAA 3 cut(s) 93, 365, 483
BpuEI CTTGAG 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 799
Bse118I RCCGGY 1 cut(s) 648
Bse1I ACTGG 2 cut(s) 417, 809
Bse3DI GCAATG 2 cut(s) 238, 752
BseBI CCWGG 1 cut(s) 544
BseGI GGATG 2 cut(s) 178, 777
BseLI CCNNNNNNNGG 1 cut(s) 799
BseMI GCAATG 2 cut(s) 238, 752
BseNI ACTGG 2 cut(s) 417, 809
BseRI GAGGAG 1 cut(s) 617
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 1 cut(s) 667
BseYI CCCAGC 1 cut(s) 370
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 3 cut(s) 121, 551, 648
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 2 cut(s) 302, 649
BslI CCNNNNNNNGG 1 cut(s) 799
BsmAI GTCTC 2 cut(s) 69, 161
BsmBI CGTCTC 2 cut(s) 69, 161
BsmI GAATGC 2 cut(s) 182, 404
BsnI GGCC 3 cut(s) 121, 551, 648
Bsp119I TTCGAA 3 cut(s) 93, 365, 483
Bsp120I GGGCCC 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 33, 123
Bsp143I GATC 2 cut(s) 523, 742
BspACI CCGC 3 cut(s) 66, 81, 389
BspANI GGCC 3 cut(s) 121, 551, 648
BspFNI CGCG 1 cut(s) 389
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 3 cut(s) 120, 121, 567
BspPI GGATC 2 cut(s) 518, 737
BspQI GCTCTTC 2 cut(s) 21, 445
BspT104I TTCGAA 3 cut(s) 93, 365, 483
BsrDI GCAATG 2 cut(s) 238, 752
BsrFI RCCGGY 1 cut(s) 648
BsrI ACTGG 2 cut(s) 417, 809
BssAI RCCGGY 1 cut(s) 648
BssMI GATC 2 cut(s) 523, 742
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 544
Bst4CI ACNGT 2 cut(s) 240, 350
Bst6I CTCTTC 6 cut(s) 21, 159, 255, 445, 480, 788
BstACI GRCGYC 1 cut(s) 78
BstBI TTCGAA 3 cut(s) 93, 365, 483
BstC8I GCNNGC 3 cut(s) 103, 207, 297
BstDEI CTNAG 1 cut(s) 514
BstF5I GGATG 2 cut(s) 178, 777
BstFNI CGCG 1 cut(s) 389
BstH2I RGCGCY 2 cut(s) 443, 562
BstHHI GCGC 3 cut(s) 301, 442, 561
BstKTI GATC 2 cut(s) 526, 745
BstMAI GTCTC 2 cut(s) 69, 161
BstMBI GATC 2 cut(s) 523, 742
BstMWI GCNNNNNNNGC 3 cut(s) 307, 548, 565
BstNI CCWGG 1 cut(s) 544
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 542
BstSLI GKGCMC 1 cut(s) 123
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 1 cut(s) 667
BstV2I GAAGAC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
BsuRI GGCC 3 cut(s) 121, 551, 648
BtsCI GGATG 2 cut(s) 178, 777
BtsIMutI CAGTG 1 cut(s) 410
Cac8I GCNNGC 3 cut(s) 103, 207, 297
CciI TCATGA 1 cut(s) 463
CfoI GCGC 3 cut(s) 301, 442, 561
Cfr10I RCCGGY 1 cut(s) 648
Cfr13I GGNCC 3 cut(s) 119, 120, 646
CseI GACGC 2 cut(s) 86, 395
Csp6I GTAC 1 cut(s) 720
CviAII CATG 2 cut(s) 307, 464
CviQI GTAC 1 cut(s) 720
DdeI CTNAG 1 cut(s) 514
DpnI GATC 2 cut(s) 525, 744
DpnII GATC 2 cut(s) 523, 742
DraIII CACNNNGTG 1 cut(s) 37
DriI GACNNNNNGTC 1 cut(s) 152
Eam1104I CTCTTC 6 cut(s) 21, 159, 255, 445, 480, 788
Eam1105I GACNNNNNGTC 1 cut(s) 152
EarI CTCTTC 6 cut(s) 21, 159, 255, 445, 480, 788
EciI GGCGGA 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 123
Eco47III AGCGCT 1 cut(s) 441
Eco57I CTGAAG 2 cut(s) 183, 597
EcoO109I RGGNCCY 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 542
EcoT38I GRGCYC 1 cut(s) 123
Esp3I CGTCTC 2 cut(s) 69, 161
FaeI CATG 2 cut(s) 310, 467
FatI CATG 2 cut(s) 306, 463
FauNDI CATATG 2 cut(s) 335, 356
Fnu4HI GCNGC 2 cut(s) 81, 681
FokI GGATG 2 cut(s) 185, 764
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 2 cut(s) 81, 681
FspBI CTAG 1 cut(s) 473
GlaI GCGC 3 cut(s) 300, 441, 560
GluI GCNGC 2 cut(s) 81, 681
GsaI CCCAGC 1 cut(s) 374
HaeII RGCGCY 2 cut(s) 443, 562
HaeIII GGCC 3 cut(s) 121, 551, 648
HapII CCGG 2 cut(s) 302, 649
HgaI GACGC 2 cut(s) 86, 395
HhaI GCGC 3 cut(s) 301, 442, 561
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 310, 467
Hin6I GCGC 3 cut(s) 299, 440, 559
HinP1I GCGC 3 cut(s) 299, 440, 559
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HpaII CCGG 2 cut(s) 302, 649
Hpy166II GTNNAC 2 cut(s) 667, 720
Hpy188III TCNNGA 2 cut(s) 464, 686
Hpy8I GTNNAC 2 cut(s) 667, 720
Hpy99I CGWCG 5 cut(s) 61, 110, 137, 386, 389
HpyAV CCTTC 5 cut(s) 221, 321, 435, 537, 541
HpyCH4III ACNGT 2 cut(s) 240, 350
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 2 cut(s) 182, 402
HpyF10VI GCNNNNNNNGC 3 cut(s) 307, 548, 565
HpyF3I CTNAG 1 cut(s) 514
HpySE526I ACGT 1 cut(s) 328
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 310, 467
HspAI GCGC 3 cut(s) 299, 440, 559
Kzo9I GATC 2 cut(s) 523, 742
LguI GCTCTTC 2 cut(s) 21, 445
LmnI GCTCC 2 cut(s) 565, 688
LpnPI CCDG 9 cut(s) 115, 174, 315, 356, 398, 529, 556, 662, 699
Lsp1109I GCAGC 1 cut(s) 667
MaeI CTAG 1 cut(s) 473
MaeII ACGT 1 cut(s) 328
MalI GATC 2 cut(s) 525, 744
MboI GATC 2 cut(s) 523, 742
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 2 cut(s) 33, 123
MluCI AATT 3 cut(s) 221, 323, 689
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 8 cut(s) 64, 73, 208, 256, 481, 595, 791, 803
MseI TTAA 2 cut(s) 393, 817
MspI CCGG 2 cut(s) 302, 649
MspR9I CCNGG 1 cut(s) 544
Mva1269I GAATGC 2 cut(s) 182, 404
MvaI CCWGG 1 cut(s) 544
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 3 cut(s) 307, 548, 565
NdeI CATATG 2 cut(s) 335, 356
NdeII GATC 2 cut(s) 523, 742
NlaIII CATG 2 cut(s) 310, 467
NlaIV GGNNCC 3 cut(s) 120, 121, 567
NspI RCATGY 1 cut(s) 310
NspV TTCGAA 3 cut(s) 93, 365, 483
PagI TCATGA 1 cut(s) 463
PciSI GCTCTTC 2 cut(s) 21, 445
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PctI GAATGC 2 cut(s) 182, 404
PkrI GCNGC 2 cut(s) 82, 682
Psp6I CCWGG 1 cut(s) 542
PspFI CCCAGC 1 cut(s) 370
PspGI CCWGG 1 cut(s) 542
PspN4I GGNNCC 3 cut(s) 120, 121, 567
PspOMI GGGCCC 1 cut(s) 119
PspPI GGNCC 3 cut(s) 119, 120, 646
PsrI GAACNNNNNNTAC 2 cut(s) 273, 305
PsuI RGATCY 1 cut(s) 742
RsaI GTAC 1 cut(s) 721
RsaNI GTAC 1 cut(s) 720
SapI GCTCTTC 2 cut(s) 21, 445
SaqAI TTAA 2 cut(s) 393, 817
SatI GCNGC 2 cut(s) 81, 681
Sau3AI GATC 2 cut(s) 523, 742
Sau96I GGNCC 3 cut(s) 119, 120, 646
ScrFI CCNGG 1 cut(s) 544
SduI GDGCHC 2 cut(s) 33, 123
SetI ASST 8 cut(s) 163, 180, 219, 297, 331, 372, 463, 682
SfuI TTCGAA 3 cut(s) 93, 365, 483
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 3 cut(s) 221, 323, 689
SsiI CCGC 3 cut(s) 66, 81, 389
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 1 cut(s) 542
TaaI ACNGT 2 cut(s) 240, 350
TaiI ACGT 1 cut(s) 331
TaqI TCGA 5 cut(s) 93, 145, 365, 483, 786
TasI AATT 3 cut(s) 221, 323, 689
TatI WGTACW 1 cut(s) 719
TauI GCSGC 1 cut(s) 83
Tru1I TTAA 2 cut(s) 393, 817
Tru9I TTAA 2 cut(s) 393, 817
TscAI CASTG 1 cut(s) 417
TseI GCWGC 1 cut(s) 680
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 1 cut(s) 417
XceI RCATGY 1 cut(s) 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XspI CTAG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.