FvH4_4g08690

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0003372
Physical Location & Seq
Forward (+)
9262348 .. 9264841
2494 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08690.t1

Sequence Viewer

Length: 378 bp
ATGCCTTCATCTGTGGAATTGCGTTCCATATGTCATTCAAACCGCGCCATATGCTTCTCGAAACTGGGAAAATATGAAGACGCGGTTAAGGAATGTACAAAGGCACTGGAGCTAAATCATACGTATTTGAAAGCGCTGATTAGAAGAGCAGAAGCTCATGAAAAACTAGAACAATTTGAAGAGGCTATTGCTGATTTGAAAAAAATCTTAGAACTTGATCCTTCAAATGTCCAAGCCAGGAAGGCCATTCGGCGCTTGGAGCCACTTGCTGAAGCCAAGAGAGAAAAGATGAAAGAAGAGATGATTGGGAAGTTGAAAGATATGGGCAACTCTTTGTTGGGCCGTTTCGGAATGAGTGTGACAACTTCAAAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_2 TPR_8

Protein Analysis

126

Amino Acids

14.22

Weight (kDa)

9.17

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 11 - 42 1.7e-08 Tetratricopeptide repeat
TPR_12 PF13424 13 - 73 4.9e-06 Tetratricopeptide repeat
TPR_19 PF14559 23 - 85 1.2e-06 Tetratricopeptide repeat
TPR_1 PF00515 44 - 76 1.8e-08 Tetratricopeptide repeat
TPR_2 PF07719 44 - 76 4.7e-07 Tetratricopeptide repeat
TPR_8 PF13181 44 - 76 5.5e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 45, 83
AciI CCGC 2 cut(s) 43, 83
AclWI GGATC 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 1 cut(s) 97
AfeI AGCGCT 1 cut(s) 135
AgsI TTSAA 7 cut(s) 39, 130, 179, 199, 225, 316, 369
AjnI CCWGG 1 cut(s) 236
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 3 cut(s) 112, 155, 373
AluI AGCT 3 cut(s) 112, 155, 373
AlwI GGATC 1 cut(s) 212
Aor51HI AGCGCT 1 cut(s) 135
AoxI GGCC 2 cut(s) 243, 340
AspLEI GCGC 3 cut(s) 47, 136, 255
AspS9I GGNCC 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 84
BceAI ACGGC 1 cut(s) 327
BciT130I CCWGG 1 cut(s) 238
BfaI CTAG 1 cut(s) 167
BfoI RGCGCY 2 cut(s) 137, 256
BglI GCCNNNNNGGC 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 238
BmrI ACTGGG 1 cut(s) 74
BmuI ACTGGG 1 cut(s) 74
BpiI GAAGAC 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 123
Bse1I ACTGG 2 cut(s) 69, 111
BseBI CCWGG 1 cut(s) 238
BseNI ACTGG 2 cut(s) 69, 111
Bsh1236I CGCG 2 cut(s) 45, 83
BshFI GGCC 2 cut(s) 245, 342
BsnI GGCC 2 cut(s) 245, 342
Bsp1407I TGTACA 1 cut(s) 95
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 2 cut(s) 43, 83
BspANI GGCC 2 cut(s) 245, 342
BspFNI CGCG 2 cut(s) 45, 83
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 1 cut(s) 212
BspQI GCTCTTC 1 cut(s) 139
BsrGI TGTACA 1 cut(s) 95
BsrI ACTGG 2 cut(s) 69, 111
BssMI GATC 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 238
Bst6I CTCTTC 3 cut(s) 139, 174, 291
BstAUI TGTACA 1 cut(s) 95
BstBAI YACGTR 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 208
BstFNI CGCG 2 cut(s) 45, 83
BstH2I RGCGCY 2 cut(s) 137, 256
BstHHI GCGC 3 cut(s) 47, 136, 255
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 3 cut(s) 51, 242, 259
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
BstSNI TACGTA 1 cut(s) 123
BstUI CGCG 2 cut(s) 45, 83
BstV2I GAAGAC 1 cut(s) 84
BsuRI GGCC 2 cut(s) 245, 342
BtsIMutI CAGTG 1 cut(s) 104
CciI TCATGA 1 cut(s) 157
CfoI GCGC 3 cut(s) 47, 136, 255
Cfr13I GGNCC 1 cut(s) 340
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 96
CviAII CATG 1 cut(s) 158
CviJI RGCY 9 cut(s) 112, 155, 185, 236, 245, 262, 275, 342, 373
CviKI_1 RGCY 9 cut(s) 112, 155, 185, 236, 245, 262, 275, 342, 373
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 1 cut(s) 208
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eam1104I CTCTTC 3 cut(s) 139, 174, 291
EarI CTCTTC 3 cut(s) 139, 174, 291
Eco105I TACGTA 1 cut(s) 123
Eco47III AGCGCT 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 236
FaeI CATG 1 cut(s) 161
FaiI YATR 8 cut(s) 29, 31, 50, 52, 75, 120, 159, 323
FatI CATG 1 cut(s) 157
FauNDI CATATG 2 cut(s) 29, 50
FspBI CTAG 1 cut(s) 167
GlaI GCGC 3 cut(s) 46, 135, 254
GsuI CTGGAG 1 cut(s) 128
HaeII RGCGCY 2 cut(s) 137, 256
HaeIII GGCC 2 cut(s) 245, 342
HgaI GACGC 1 cut(s) 89
HhaI GCGC 3 cut(s) 47, 136, 255
Hin1II CATG 1 cut(s) 161
Hin6I GCGC 3 cut(s) 45, 134, 253
HinP1I GCGC 3 cut(s) 45, 134, 253
Hpy188I TCNGA 1 cut(s) 350
Hpy188III TCNNGA 2 cut(s) 58, 158
HpyAV CCTTC 3 cut(s) 15, 231, 235
HpyCH4IV ACGT 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 242, 259
HpyF3I CTNAG 1 cut(s) 208
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 1 cut(s) 161
HspAI GCGC 3 cut(s) 45, 134, 253
Kzo9I GATC 1 cut(s) 217
LguI GCTCTTC 1 cut(s) 139
LmnI GCTCC 2 cut(s) 109, 259
LpnPI CCDG 4 cut(s) 50, 92, 223, 250
MaeI CTAG 1 cut(s) 167
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 358
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 4 cut(s) 89, 156, 191, 308
MluCI AATT 2 cut(s) 17, 173
MnlI CCTC 1 cut(s) 175
MseI TTAA 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 238
MvaI CCWGG 1 cut(s) 238
MvnI CGCG 2 cut(s) 45, 83
MwoI GCNNNNNNNGC 3 cut(s) 51, 242, 259
NdeI CATATG 2 cut(s) 29, 50
NdeII GATC 1 cut(s) 217
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 358
PagI TCATGA 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 139
Ppu21I YACGTR 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 340
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 87
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 340
ScrFI CCNGG 1 cut(s) 238
SetI ASST 4 cut(s) 114, 125, 157, 375
SnaBI TACGTA 1 cut(s) 123
Sse9I AATT 2 cut(s) 17, 173
SsiI CCGC 2 cut(s) 43, 83
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 236
TaiI ACGT 1 cut(s) 125
TaqI TCGA 1 cut(s) 59
TasI AATT 2 cut(s) 17, 173
TatI WGTACW 1 cut(s) 95
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 1 cut(s) 358
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 3 cut(s) 90, 174, 305
TspRI CASTG 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.