Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003372

Physical Location & Seq

Genomic Coordinates Forward (+)

30063240 .. 30070953

Gene Structure 7714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCTTATAGAAGAAGTAAAAGAAGCAACAGCCACGGAAGAAGAGCACAATGTGAAGTCCCAAAAACCCTCGCCGTCGTCGTCCGCCCACAAAGATTCGTCCGATGGCTTCGAAACTGCCAGCGACGGCGAGTTGGGACCCACCGACAGCGACGATGAATCCCAACACCACCTCCATCTCCAAGAGGAGCCGCAAAATCTCTCTGCGGCCGATCAACAGAAATCACTCGAGCAAGCAAATGAGGTTAAATTGCAAGGCAATGGACTGTTTGGGAATGGGCAATATGAAGAGGCATTGTCGCAGTATGAACTTGCTTTACAACTTGCGCCTGACATGCCTTCATCTGTGGAATTACGTTCCATATGTCATTCAAACCGTGCCATATGCTTCTCGAAACTGGGAAAGTACGAAGATGCAGTTAAGGAATGCACAAAAGCAGTGGAACTAAATCCTTCATATTTGAAAGCACTGATTAGAAGAGCTGAAGCTCACGAAAAGCTAGAACACTTCGAAGAGGCTATTACTGATATGAAAAAGATATTAGAACTTGATCCTTCAAATGACCAAGCCAGGAAGGCCATTCGACGCTTGGAGCCACTTGCTGAAGCAAAGAGAGAAAAGATGAAAGAGGAGATGATTGGGAAGTTGAAAGATATGGGCAACTCTTTGTTGGGCCGATTTGGAATGAGTGTGGACAACTTCAAAGCCGTTAAAGATCCTAACACCGGATCATATTCTATTTCATTCCAACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

252

Amino Acids

28.02

Weight (kDa)

5.1

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_2	PF07719	122 - 152	9.8e-06	Tetratricopeptide repeat
TPR_1	PF00515	122 - 153	2.8e-08	Tetratricopeptide repeat
TPR_19	PF14559	134 - 196	3.6e-06	Tetratricopeptide repeat
TPR_2	PF07719	155 - 187	3.9e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30480 AT4G30480 AT4G30480
fragaria_vesca	FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_4g08690
malus_domestica	MD04G1009600.v1.1 MD16G1260600.v1.1
prunus_persica	Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.8G039000_v2.0.a1 Prupe.8G039000_v2.0.a1
pyrus_communis	pycom04g00740 pycom16g22830
rosa_chinensis	RchiOBHm_Chr4g0405181
rosa_laevigata	RLG00000008866
rosa_multiflora	Rmu_sc0004988.1_g000011 Rmu_ssc0000255.1_g000025
rosa_roxburghii	Rroxscaffold_5G00341850 Rroxscaffold_5G00349430
rosa_rugosa	Rorug04G0054700
rosa_samantha	Rh4AG129500 Rh4BG123300 Rh4CG136800 Rh4DG123000
rosa_wichuraiana	Rw4G010460 Rw5G038600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	84, 191, 206
AclI	AACGTT	1 cut(s)	751
AclWI	GGATC	3 cut(s)	545, 710, 736
AcoI	YGGCCR	1 cut(s)	207
AcuI	CTGAAG	2 cut(s)	504, 624
AdeI	CACNNNGTG	1 cut(s)	52
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	725
AgsI	TTSAA	5 cut(s)	372, 463, 558, 649, 703
AjnI	CCWGG	1 cut(s)	569
AluBI	AGCT	3 cut(s)	482, 488, 499
AluI	AGCT	3 cut(s)	482, 488, 499
Alw21I	GWGCWC	1 cut(s)	48
AlwI	GGATC	3 cut(s)	545, 710, 736
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	3 cut(s)	207, 576, 673
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	2 cut(s)	137, 673
AsuII	TTCGAA	2 cut(s)	111, 510
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	48
BccI	CCATC	2 cut(s)	98, 183
BceAI	ACGGC	3 cut(s)	58, 142, 692
BciT130I	CCWGG	1 cut(s)	571
BfaI	CTAG	1 cut(s)	500
BglI	GCCNNNNNGGC	1 cut(s)	575
BisI	GCNGC	2 cut(s)	191, 207
BlsI	GCNGC	2 cut(s)	192, 208
Bme1390I	CCNGG	1 cut(s)	571
Bme18I	GGWCC	1 cut(s)	137
BmeT110I	CYCGRG	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	137, 673
BmiI	GGNNCC	4 cut(s)	138, 139, 189, 594
BmrFI	CCNGG	1 cut(s)	571
BmrI	ACTGGG	1 cut(s)	407
BmsI	GCATC	1 cut(s)	403
BmuI	ACTGGG	1 cut(s)	407
Bpu14I	TTCGAA	2 cut(s)	111, 510
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	725
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	725
Bse1I	ACTGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	571
BseDI	CCNNGG	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	725
BseMI	GCAATG	1 cut(s)	265
BseNI	ACTGG	1 cut(s)	402
BseRI	GAGGAG	2 cut(s)	200, 644
BseX3I	CGGCCG	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	3 cut(s)	209, 578, 675
BsiEI	CGRYCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	726
BslFI	GGGAC	2 cut(s)	43, 150
BslI	CCNNNNNNNGG	1 cut(s)	725
BsmFI	GGGAC	2 cut(s)	43, 150
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	3 cut(s)	209, 578, 675
BsoBI	CYCGRG	1 cut(s)	227
Bsp119I	TTCGAA	2 cut(s)	111, 510
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	211, 550, 715, 728
BspACI	CCGC	3 cut(s)	84, 191, 206
BspANI	GGCC	3 cut(s)	209, 578, 675
BspLI	GGNNCC	4 cut(s)	138, 139, 189, 594
BspPI	GGATC	3 cut(s)	545, 710, 736
BspQI	GCTCTTC	2 cut(s)	36, 472
BspT104I	TTCGAA	2 cut(s)	111, 510
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	4 cut(s)	211, 550, 715, 728
Bst2UI	CCWGG	1 cut(s)	571
Bst4CI	ACNGT	2 cut(s)	267, 377
Bst6I	CTCTTC	4 cut(s)	36, 282, 472, 507
BstBI	TTCGAA	2 cut(s)	111, 510
BstC8I	GCNNGC	2 cut(s)	121, 234
BstDSI	CCRYGG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	4 cut(s)	214, 553, 718, 731
BstMBI	GATC	4 cut(s)	211, 550, 715, 728
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	2 cut(s)	334, 575
BstNI	CCWGG	1 cut(s)	571
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	569
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
BstZI	CGGCCG	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	209, 578, 675
BtgI	CCRYGG	1 cut(s)	33
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	2 cut(s)	444, 467
Cac8I	GCNNGC	2 cut(s)	121, 234
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	2 cut(s)	137, 673
CseI	GACGC	1 cut(s)	594
Csp6I	GTAC	1 cut(s)	406
CspCI	CAANNNNNGTGG	2 cut(s)	420, 455
CviAII	CATG	1 cut(s)	334
CviQI	GTAC	1 cut(s)	406
DpnI	GATC	4 cut(s)	213, 552, 717, 730
DpnII	GATC	4 cut(s)	211, 550, 715, 728
DraIII	CACNNNGTG	1 cut(s)	52
EaeI	YGGCCR	1 cut(s)	207
EagI	CGGCCG	1 cut(s)	207
Eam1104I	CTCTTC	4 cut(s)	36, 282, 472, 507
EarI	CTCTTC	4 cut(s)	36, 282, 472, 507
EciI	GGCGGA	1 cut(s)	73
EclXI	CGGCCG	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	137
Eco52I	CGGCCG	1 cut(s)	207
Eco57I	CTGAAG	2 cut(s)	504, 624
Eco88I	CYCGRG	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	569
FaeI	CATG	1 cut(s)	337
FaqI	GGGAC	2 cut(s)	43, 150
FatI	CATG	1 cut(s)	333
FauNDI	CATATG	2 cut(s)	362, 383
Fnu4HI	GCNGC	2 cut(s)	191, 207
Fsp4HI	GCNGC	2 cut(s)	191, 207
FspBI	CTAG	1 cut(s)	500
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	2 cut(s)	191, 207
HaeIII	GGCC	3 cut(s)	209, 578, 675
HapII	CCGG	1 cut(s)	726
HgaI	GACGC	1 cut(s)	594
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	1 cut(s)	337
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	2 cut(s)	95, 158
HpaII	CCGG	1 cut(s)	726
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	2 cut(s)	391, 491
Hpy8I	GTNNAC	1 cut(s)	694
Hpy99I	CGWCG	5 cut(s)	79, 82, 128, 155, 588
HpyAV	CCTTC	4 cut(s)	348, 462, 564, 568
HpyCH4III	ACNGT	2 cut(s)	267, 377
HpyCH4IV	ACGT	2 cut(s)	355, 751
HpyCH4V	TGCA	3 cut(s)	253, 416, 429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	334, 575
HpySE526I	ACGT	2 cut(s)	355, 751
Hsp92II	CATG	1 cut(s)	337
HspAI	GCGC	1 cut(s)	326
KflI	GGGWCCC	1 cut(s)	137
Kzo9I	GATC	4 cut(s)	211, 550, 715, 728
LguI	GCTCTTC	2 cut(s)	36, 472
LmnI	GCTCC	2 cut(s)	187, 592
LpnPI	CCDG	6 cut(s)	133, 342, 383, 556, 583, 739
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	2 cut(s)	355, 751
MalI	GATC	4 cut(s)	213, 552, 717, 730
MboI	GATC	4 cut(s)	211, 550, 715, 728
MboII	GAAGA	7 cut(s)	23, 50, 53, 299, 422, 489, 524
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	248, 350
MnlI	CCTC	7 cut(s)	79, 178, 182, 235, 283, 508, 622
MseI	TTAA	4 cut(s)	246, 420, 711, 754
MspI	CCGG	1 cut(s)	726
MspR9I	CCNGG	1 cut(s)	571
Mva1269I	GAATGC	1 cut(s)	431
MvaI	CCWGG	1 cut(s)	571
MwoI	GCNNNNNNNGC	2 cut(s)	334, 575
NdeI	CATATG	2 cut(s)	362, 383
NdeII	GATC	4 cut(s)	211, 550, 715, 728
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	4 cut(s)	138, 139, 189, 594
NspI	RCATGY	1 cut(s)	337
NspV	TTCGAA	2 cut(s)	111, 510
PaeR7I	CTCGAG	1 cut(s)	227
PciSI	GCTCTTC	2 cut(s)	36, 472
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PctI	GAATGC	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	95, 158
PkrI	GCNGC	2 cut(s)	192, 208
PpuMI	RGGWCCY	1 cut(s)	137
Psp1406I	AACGTT	1 cut(s)	751
Psp5II	RGGWCCY	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	569
PspN4I	GGNNCC	4 cut(s)	138, 139, 189, 594
PspPI	GGNCC	2 cut(s)	137, 673
PspPPI	RGGWCCY	1 cut(s)	137
PspXI	VCTCGAGB	1 cut(s)	227
PsrI	GAACNNNNNNTAC	2 cut(s)	300, 332
PsuI	RGATCY	1 cut(s)	715
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SapI	GCTCTTC	2 cut(s)	36, 472
SaqAI	TTAA	4 cut(s)	246, 420, 711, 754
SatI	GCNGC	2 cut(s)	191, 207
Sau3AI	GATC	4 cut(s)	211, 550, 715, 728
Sau96I	GGNCC	2 cut(s)	137, 673
ScrFI	CCNGG	1 cut(s)	571
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	7 cut(s)	174, 246, 358, 484, 490, 501, 754
SfaNI	GCATC	1 cut(s)	403
Sfr274I	CTCGAG	1 cut(s)	227
SfuI	TTCGAA	2 cut(s)	111, 510
SinI	GGWCC	1 cut(s)	137
SlaI	CTCGAG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	248, 350
SsiI	CCGC	3 cut(s)	84, 191, 206
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	569
TaaI	ACNGT	2 cut(s)	267, 377
TaiI	ACGT	2 cut(s)	358, 754
TaqI	TCGA	5 cut(s)	111, 228, 392, 510, 583
TasI	AATT	2 cut(s)	248, 350
TauI	GCSGC	2 cut(s)	193, 209
TfiI	GAWTC	2 cut(s)	95, 158
Tru1I	TTAA	4 cut(s)	246, 420, 711, 754
Tru9I	TTAA	4 cut(s)	246, 420, 711, 754
TscAI	CASTG	2 cut(s)	444, 474
TspDTI	ATGAA	8 cut(s)	171, 300, 321, 330, 444, 545, 638, 732
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	2 cut(s)	444, 474
VpaK11BI	GGWCC	1 cut(s)	137
XceI	RCATGY	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XhoI	CTCGAG	1 cut(s)	227
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.