Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003372

Physical Location & Seq

Genomic Coordinates Forward (+)

27074572 .. 27078025

Gene Structure 3454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG136800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCTTATAGAAGAAGAAAAGGAAGAAGAGCACAATGTGAAGACCCCAAAACCCTCGTCGTCCTCCGCCAACAAAGACGCCGCCGATGGCTTCGAAACTGCCAGCGACGGCGAGTTGGGACCGAACGAAAGCGACGATGAAACTCAACACCACGTCCAACTTGAAGAGACGGATGACCTTGCATTCAAACAGAAATCGCTTGAGCAAGCAAATGAGGTAAAATTGGAAGGCAATGGACTGTTTGGGAATGGACAATATGAAGAGGCATTGTCGAAGTATGAACTTGCTTTACAGCTTGCGCCGGACATGCCTTCATCTGTGGAATTACGTTCCATATGTCATTCGAACCGTGCCATATGCTTTTCGAAGCTGGGAAAATACGACGACGCGGTTAAGGAATGCACAAAAGCACTGGAACTGAATCCTTCATATATGAAAGCGCTGATTAGAAGAGCAGAAGCTCATGAAAAACTAGAGCATTTCGAAGAGGCTATTGCTGGTATTTATGGCGTTTTAAACATTTTATTGTTATATATCTTGGGACAATGTAGCACCATTATTGACTCTTTTTGTTCAGCTGTAACTTCTTTGTCTCTTCATGTGTATGGGTTAGTGGTTTTATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

208

Amino Acids

23.02

Weight (kDa)

4.65

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	113 - 144	2.8e-09	Tetratricopeptide repeat
TPR_2	PF07719	113 - 143	1.7e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30480 AT4G30480 AT4G30480
fragaria_vesca	FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_4g08690
malus_domestica	MD04G1009600.v1.1 MD16G1260600.v1.1
prunus_persica	Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.8G039000_v2.0.a1 Prupe.8G039000_v2.0.a1
pyrus_communis	pycom04g00740 pycom16g22830
rosa_chinensis	RchiOBHm_Chr4g0405181
rosa_laevigata	RLG00000008866
rosa_multiflora	Rmu_sc0004988.1_g000011 Rmu_ssc0000255.1_g000025
rosa_roxburghii	Rroxscaffold_5G00341850 Rroxscaffold_5G00349430
rosa_rugosa	Rorug04G0054700
rosa_samantha	Rh4AG129500 Rh4BG123300 Rh4CG136800 Rh4DG123000
rosa_wichuraiana	Rw4G010460 Rw5G038600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	389
AciI	CCGC	3 cut(s)	66, 81, 389
AcyI	GRCGYC	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	37
AfeI	AGCGCT	1 cut(s)	441
AgsI	TTSAA	2 cut(s)	164, 187
AjiI	CACGTC	1 cut(s)	154
AluBI	AGCT	4 cut(s)	295, 370, 461, 578
AluI	AGCT	4 cut(s)	295, 370, 461, 578
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	2 cut(s)	161, 597
Aor51HI	AGCGCT	1 cut(s)	441
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AspLEI	GCGC	2 cut(s)	301, 442
AspS9I	GGNCC	1 cut(s)	119
AsuII	TTCGAA	4 cut(s)	93, 344, 365, 483
AvaII	GGWCC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	33
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	161, 597
BfaI	CTAG	1 cut(s)	473
BfoI	RGCGCY	1 cut(s)	443
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	119
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	47
Bpu14I	TTCGAA	4 cut(s)	93, 344, 365, 483
BpuEI	CTTGAG	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	417
Bse3DI	GCAATG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	178
BseMI	GCAATG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	417
BseYI	CCCAGC	1 cut(s)	370
Bsh1236I	CGCG	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	2 cut(s)	132, 555
BsmAI	GTCTC	2 cut(s)	161, 597
BsmBI	CGTCTC	1 cut(s)	161
BsmFI	GGGAC	2 cut(s)	132, 555
BsmI	GAATGC	2 cut(s)	182, 404
Bsp119I	TTCGAA	4 cut(s)	93, 344, 365, 483
Bsp1286I	GDGCHC	1 cut(s)	33
BspACI	CCGC	3 cut(s)	66, 81, 389
BspFNI	CGCG	1 cut(s)	389
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	1 cut(s)	120
BspQI	GCTCTTC	2 cut(s)	21, 445
BspT104I	TTCGAA	4 cut(s)	93, 344, 365, 483
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	417
BssNI	GRCGYC	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	240, 350
Bst6I	CTCTTC	6 cut(s)	21, 159, 255, 445, 480, 600
BstACI	GRCGYC	1 cut(s)	78
BstBI	TTCGAA	4 cut(s)	93, 344, 365, 483
BstC8I	GCNNGC	3 cut(s)	103, 207, 297
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	389
BstH2I	RGCGCY	1 cut(s)	443
BstHHI	GCGC	2 cut(s)	301, 442
BstMAI	GTCTC	2 cut(s)	161, 597
BstMWI	GCNNNNNNNGC	1 cut(s)	307
BstNSI	RCATGY	1 cut(s)	310
BstUI	CGCG	1 cut(s)	389
BstV2I	GAAGAC	1 cut(s)	47
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	410
Cac8I	GCNNGC	3 cut(s)	103, 207, 297
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	2 cut(s)	301, 442
Cfr13I	GGNCC	1 cut(s)	119
CseI	GACGC	2 cut(s)	86, 395
CviAII	CATG	3 cut(s)	307, 464, 599
CviJI	RGCY	6 cut(s)	90, 295, 370, 461, 491, 578
CviKI_1	RGCY	6 cut(s)	90, 295, 370, 461, 491, 578
DraI	TTTAAA	1 cut(s)	516
DraIII	CACNNNGTG	1 cut(s)	37
Eam1104I	CTCTTC	6 cut(s)	21, 159, 255, 445, 480, 600
EarI	CTCTTC	6 cut(s)	21, 159, 255, 445, 480, 600
EciI	GGCGGA	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	119
Eco47III	AGCGCT	1 cut(s)	441
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	3 cut(s)	310, 467, 602
FaqI	GGGAC	2 cut(s)	132, 555
FatI	CATG	3 cut(s)	306, 463, 598
FauNDI	CATATG	2 cut(s)	335, 356
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	473
GlaI	GCGC	2 cut(s)	300, 441
GluI	GCNGC	1 cut(s)	81
GsaI	CCCAGC	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	443
HapII	CCGG	1 cut(s)	302
HgaI	GACGC	2 cut(s)	86, 395
HhaI	GCGC	2 cut(s)	301, 442
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	3 cut(s)	310, 467, 602
Hin6I	GCGC	2 cut(s)	299, 440
HinP1I	GCGC	2 cut(s)	299, 440
HinfI	GANTC	2 cut(s)	421, 563
HpaII	CCGG	1 cut(s)	302
Hpy188III	TCNNGA	1 cut(s)	464
Hpy99I	CGWCG	5 cut(s)	61, 110, 137, 386, 389
HpyAV	CCTTC	3 cut(s)	221, 321, 435
HpyCH4III	ACNGT	2 cut(s)	240, 350
HpyCH4IV	ACGT	2 cut(s)	153, 328
HpyCH4V	TGCA	2 cut(s)	182, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	307
HpySE526I	ACGT	2 cut(s)	153, 328
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	310, 467, 602
HspAI	GCGC	2 cut(s)	299, 440
LguI	GCTCTTC	2 cut(s)	21, 445
LpnPI	CCDG	5 cut(s)	115, 315, 356, 398, 483
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	2 cut(s)	153, 328
MaeIII	GTNAC	1 cut(s)	580
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	2 cut(s)	221, 323
MlyI	GAGTC	1 cut(s)	557
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	5 cut(s)	64, 73, 208, 256, 481
MseI	TTAA	2 cut(s)	393, 515
MslI	CAYNNNNRTG	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	1 cut(s)	302
Mva1269I	GAATGC	2 cut(s)	182, 404
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	1 cut(s)	307
NdeI	CATATG	2 cut(s)	335, 356
NlaIII	CATG	3 cut(s)	310, 467, 602
NlaIV	GGNNCC	1 cut(s)	120
NspI	RCATGY	1 cut(s)	310
NspV	TTCGAA	4 cut(s)	93, 344, 365, 483
PagI	TCATGA	1 cut(s)	463
PciSI	GCTCTTC	2 cut(s)	21, 445
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	2 cut(s)	182, 404
PfeI	GAWTC	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
PspFI	CCCAGC	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	119
PsrI	GAACNNNNNNTAC	2 cut(s)	273, 305
PvuII	CAGCTG	1 cut(s)	578
RseI	CAYNNNNRTG	1 cut(s)	603
SapI	GCTCTTC	2 cut(s)	21, 445
SaqAI	TTAA	2 cut(s)	393, 515
SatI	GCNGC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	557
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	8 cut(s)	156, 180, 219, 297, 331, 372, 463, 580
SfuI	TTCGAA	4 cut(s)	93, 344, 365, 483
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	221, 323
SsiI	CCGC	3 cut(s)	66, 81, 389
SspMI	CTAG	1 cut(s)	473
TaaI	ACNGT	2 cut(s)	240, 350
TaiI	ACGT	2 cut(s)	156, 331
TaqI	TCGA	5 cut(s)	93, 272, 344, 365, 483
TaqII	GACCGA	1 cut(s)	136
TasI	AATT	2 cut(s)	221, 323
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	2 cut(s)	393, 515
Tru9I	TTAA	2 cut(s)	393, 515
TscAI	CASTG	1 cut(s)	417
TspDTI	ATGAA	8 cut(s)	153, 273, 294, 303, 417, 449, 480, 587
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	119
XceI	RCATGY	1 cut(s)	310
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.