Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003372

Physical Location & Seq

Genomic Coordinates Forward (+)

19801606 .. 19804436

Gene Structure 2831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG123000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCTTATAGAAGAAGAAAAGGAAGAAGAGCACAATGTGAAGACCCCAAAACCCTCGTCGTCCTCCGCCAACAAAGACGCCGCCGATGGCTTCGAAACTGCCAGCGACGGCGAGTTGGTACCGAACGAAAGCGACGGTGAAACTCAACACCCCGTCCAACTTGAAGAGACGGATGACCTTGCATTCAAACAGAAATCGCTTGAGCAAGCAAATGAGGTAAAATTGGAAGGCAATGGACTGTTTGGGAATGGACAATATGAAGAGGCATTGTCGAAGTATGAACTTGCTTTACAGCTTGCGCCGGACATGCCTTCGTCTGTGGAATTACGTTCCATATGTCATTCGAACCGTGCCATATGCTTTTCGAAGCTGGGAAAATATGACGACACGGTTAAGGAATGCACAAAAGCACTGGAACTAAATCCTTCATATATGAAAGCGCTGATTAGAAGAGCAGAAGCTCATGAAAAACTAGAACATTTCGAAGAGGCTATTGCTGATATGAAAAAAATCTTAGAACTTGATCCTTCAAATGACCAAGCCAGGAAGGCCATTCGGCGCTTGGAGCCACTAGCTGAAGCAAAGAGAGAAAAGATGAAAGAGGAGATGATTGGGAAGTTGAAAGATATGGGCAACTCGTTGTTGGGCCGGTTTGGAATGAGCGTTGACAACTTCAAAGCTGTAAAAGATCCAAACACTGGCTCGTATTCTGTTTCATTCCAACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

242

Amino Acids

27.11

Weight (kDa)

5.01

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	113 - 144	2.4e-07	Tetratricopeptide repeat
TPR_2	PF07719	146 - 178	2.3e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30480 AT4G30480 AT4G30480
fragaria_vesca	FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_4g08690
malus_domestica	MD04G1009600.v1.1 MD16G1260600.v1.1
prunus_persica	Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.8G039000_v2.0.a1 Prupe.8G039000_v2.0.a1
pyrus_communis	pycom04g00740 pycom16g22830
rosa_chinensis	RchiOBHm_Chr4g0405181
rosa_laevigata	RLG00000008866
rosa_multiflora	Rmu_sc0004988.1_g000011 Rmu_ssc0000255.1_g000025
rosa_roxburghii	Rroxscaffold_5G00341850 Rroxscaffold_5G00349430
rosa_rugosa	Rorug04G0054700
rosa_samantha	Rh4AG129500 Rh4BG123300 Rh4CG136800 Rh4DG123000
rosa_wichuraiana	Rw4G010460 Rw5G038600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	118
AccB1I	GGYRCC	1 cut(s)	118
AccB7I	CCANNNNNTGG	1 cut(s)	698
AciI	CCGC	2 cut(s)	66, 81
AclI	AACGTT	1 cut(s)	724
AclWI	GGATC	2 cut(s)	518, 683
AcuI	CTGAAG	1 cut(s)	597
AcyI	GRCGYC	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	37
AfaI	GTAC	1 cut(s)	120
AfeI	AGCGCT	1 cut(s)	441
AfiI	CCNNNNNNNGG	1 cut(s)	698
AgsI	TTSAA	5 cut(s)	164, 187, 531, 622, 676
AjnI	CCWGG	1 cut(s)	542
AluBI	AGCT	5 cut(s)	295, 370, 461, 575, 680
AluI	AGCT	5 cut(s)	295, 370, 461, 575, 680
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	2 cut(s)	518, 683
Aor51HI	AGCGCT	1 cut(s)	441
AoxI	GGCC	2 cut(s)	549, 646
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
Asp718I	GGTACC	1 cut(s)	118
AspLEI	GCGC	3 cut(s)	301, 442, 561
AspS9I	GGNCC	1 cut(s)	646
AsuHPI	GGTGA	1 cut(s)	149
AsuII	TTCGAA	4 cut(s)	93, 344, 365, 483
BanI	GGYRCC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	33
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	2 cut(s)	473, 572
BfoI	RGCGCY	2 cut(s)	443, 562
BglI	GCCNNNNNGGC	1 cut(s)	548
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	544
BmgT120I	GGNCC	1 cut(s)	646
BmiI	GGNNCC	2 cut(s)	120, 567
BmrFI	CCNGG	1 cut(s)	544
BpiI	GAAGAC	1 cut(s)	47
Bpu14I	TTCGAA	4 cut(s)	93, 344, 365, 483
BpuEI	CTTGAG	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	698
Bse118I	RCCGGY	1 cut(s)	648
Bse1I	ACTGG	2 cut(s)	417, 703
Bse3DI	GCAATG	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	544
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	698
BseMI	GCAATG	1 cut(s)	238
BseNI	ACTGG	2 cut(s)	417, 703
BseRI	GAGGAG	1 cut(s)	617
BseYI	CCCAGC	1 cut(s)	370
BshFI	GGCC	2 cut(s)	551, 648
BshNI	GGYRCC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	302, 649
BslI	CCNNNNNNNGG	1 cut(s)	698
BsmAI	GTCTC	1 cut(s)	161
BsmBI	CGTCTC	1 cut(s)	161
BsmI	GAATGC	2 cut(s)	182, 404
BsnI	GGCC	2 cut(s)	551, 648
Bsp119I	TTCGAA	4 cut(s)	93, 344, 365, 483
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	523, 688
BspACI	CCGC	2 cut(s)	66, 81
BspANI	GGCC	2 cut(s)	551, 648
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	120, 567
BspPI	GGATC	2 cut(s)	518, 683
BspQI	GCTCTTC	2 cut(s)	21, 445
BspT104I	TTCGAA	4 cut(s)	93, 344, 365, 483
BspT107I	GGYRCC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	648
BsrI	ACTGG	2 cut(s)	417, 703
BssAI	RCCGGY	1 cut(s)	648
BssMI	GATC	2 cut(s)	523, 688
BssNI	GRCGYC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	4 cut(s)	137, 240, 350, 391
Bst6I	CTCTTC	5 cut(s)	21, 159, 255, 445, 480
BstACI	GRCGYC	1 cut(s)	78
BstBI	TTCGAA	4 cut(s)	93, 344, 365, 483
BstC8I	GCNNGC	3 cut(s)	103, 207, 297
BstDEI	CTNAG	1 cut(s)	514
BstF5I	GGATG	1 cut(s)	178
BstH2I	RGCGCY	2 cut(s)	443, 562
BstHHI	GCGC	3 cut(s)	301, 442, 561
BstKTI	GATC	2 cut(s)	526, 691
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	2 cut(s)	523, 688
BstMWI	GCNNNNNNNGC	3 cut(s)	307, 548, 565
BstNI	CCWGG	1 cut(s)	544
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	542
BstV2I	GAAGAC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	688
BsuRI	GGCC	2 cut(s)	551, 648
BtsCI	GGATG	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	410, 696
Cac8I	GCNNGC	3 cut(s)	103, 207, 297
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	3 cut(s)	301, 442, 561
Cfr10I	RCCGGY	1 cut(s)	648
Cfr13I	GGNCC	1 cut(s)	646
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	2 cut(s)	307, 464
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	1 cut(s)	514
DpnI	GATC	2 cut(s)	525, 690
DpnII	GATC	2 cut(s)	523, 688
DraIII	CACNNNGTG	1 cut(s)	37
Eam1104I	CTCTTC	5 cut(s)	21, 159, 255, 445, 480
EarI	CTCTTC	5 cut(s)	21, 159, 255, 445, 480
EciI	GGCGGA	1 cut(s)	55
Eco47III	AGCGCT	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	597
EcoRII	CCWGG	1 cut(s)	542
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	2 cut(s)	310, 467
FatI	CATG	2 cut(s)	306, 463
FauNDI	CATATG	2 cut(s)	335, 356
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	2 cut(s)	473, 572
GlaI	GCGC	3 cut(s)	300, 441, 560
GluI	GCNGC	1 cut(s)	81
GsaI	CCCAGC	1 cut(s)	374
HaeII	RGCGCY	2 cut(s)	443, 562
HaeIII	GGCC	2 cut(s)	551, 648
HapII	CCGG	2 cut(s)	302, 649
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	3 cut(s)	301, 442, 561
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	310, 467
Hin6I	GCGC	3 cut(s)	299, 440, 559
HinP1I	GCGC	3 cut(s)	299, 440, 559
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HpaII	CCGG	2 cut(s)	302, 649
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188III	TCNNGA	1 cut(s)	464
Hpy8I	GTNNAC	1 cut(s)	667
Hpy99I	CGWCG	3 cut(s)	61, 110, 137
HpyAV	CCTTC	5 cut(s)	221, 321, 435, 537, 541
HpyCH4III	ACNGT	4 cut(s)	137, 240, 350, 391
HpyCH4IV	ACGT	2 cut(s)	328, 724
HpyCH4V	TGCA	2 cut(s)	182, 402
HpyF10VI	GCNNNNNNNGC	3 cut(s)	307, 548, 565
HpyF3I	CTNAG	1 cut(s)	514
HpySE526I	ACGT	2 cut(s)	328, 724
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	310, 467
HspAI	GCGC	3 cut(s)	299, 440, 559
KpnI	GGTACC	1 cut(s)	122
Kzo9I	GATC	2 cut(s)	523, 688
LguI	GCTCTTC	2 cut(s)	21, 445
LmnI	GCTCC	1 cut(s)	565
LpnPI	CCDG	8 cut(s)	115, 315, 356, 398, 529, 556, 662, 684
MaeI	CTAG	2 cut(s)	473, 572
MaeII	ACGT	2 cut(s)	328, 724
MalI	GATC	2 cut(s)	525, 690
MboI	GATC	2 cut(s)	523, 688
MboII	GAAGA	9 cut(s)	23, 26, 35, 38, 52, 176, 272, 462, 497
MflI	RGATCY	1 cut(s)	688
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	2 cut(s)	221, 323
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	6 cut(s)	64, 73, 208, 256, 481, 595
MseI	TTAA	1 cut(s)	393
MspI	CCGG	2 cut(s)	302, 649
MspR9I	CCNGG	1 cut(s)	544
Mva1269I	GAATGC	2 cut(s)	182, 404
MvaI	CCWGG	1 cut(s)	544
MwoI	GCNNNNNNNGC	3 cut(s)	307, 548, 565
NdeI	CATATG	2 cut(s)	335, 356
NdeII	GATC	2 cut(s)	523, 688
NlaIII	CATG	2 cut(s)	310, 467
NlaIV	GGNNCC	2 cut(s)	120, 567
NspI	RCATGY	1 cut(s)	310
NspV	TTCGAA	4 cut(s)	93, 344, 365, 483
PagI	TCATGA	1 cut(s)	463
PciSI	GCTCTTC	2 cut(s)	21, 445
PctI	GAATGC	2 cut(s)	182, 404
PflMI	CCANNNNNTGG	1 cut(s)	698
PkrI	GCNGC	1 cut(s)	82
Psp1406I	AACGTT	1 cut(s)	724
Psp6I	CCWGG	1 cut(s)	542
PspFI	CCCAGC	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	542
PspN4I	GGNNCC	2 cut(s)	120, 567
PspPI	GGNCC	1 cut(s)	646
PsrI	GAACNNNNNNTAC	2 cut(s)	273, 305
PsuI	RGATCY	1 cut(s)	688
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
SapI	GCTCTTC	2 cut(s)	21, 445
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	523, 688
Sau96I	GGNCC	1 cut(s)	646
ScrFI	CCNGG	1 cut(s)	544
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	9 cut(s)	180, 219, 297, 331, 372, 463, 577, 682, 727
SfuI	TTCGAA	4 cut(s)	93, 344, 365, 483
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	221, 323
SsiI	CCGC	2 cut(s)	66, 81
SspMI	CTAG	2 cut(s)	473, 572
StyD4I	CCNGG	1 cut(s)	542
TaaI	ACNGT	4 cut(s)	137, 240, 350, 391
TaiI	ACGT	2 cut(s)	331, 727
TaqI	TCGA	5 cut(s)	93, 272, 344, 365, 483
TasI	AATT	2 cut(s)	221, 323
TauI	GCSGC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	2 cut(s)	417, 703
TspDTI	ATGAA	8 cut(s)	273, 294, 417, 449, 480, 518, 611, 705
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	2 cut(s)	417, 703
Van91I	CCANNNNNTGG	1 cut(s)	698
XceI	RCATGY	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XspI	CTAG	2 cut(s)	473, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.