Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003372

Physical Location & Seq

Genomic Coordinates Forward (+)

7953288 .. 7958458

Gene Structure 5171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G099700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCGGATCGAAGAAAAAGAGACAGAAAAGCATAGCGATTTGAATTCCCCGAAACCCTCGTCTTCCAACAACAGAAATGCCTCCGATGGCTTCGAAACTGCCAGTGACGGAGAACTCGGATCCAACGGTAGCGACAACGACGACGAAACCCAACAACAAGAGGAACAGCAAAGTCTCTCTCAGGCTGACGACGTCGTATTGAAACAGAAGGCGTTTGAACAAGCAAATGATGTGAAAATGGGAGGCAATAGACTGTTTGGCAGTGGGCAATATGAAGAGGCATTATCACAGTATGAGCTTGCTTTACACCTTGCGCCTGACATGCCATCATCTGTGGAATTACGCTCAATATGTCACGCAAACAGTGCAATATGTTGTTCGAAAATGGGAAAATATGAGGATGCAATCAAGGAATGCACAAAAGCGCTAGAACTAAATCCTTCATATATGAAAGCTCTGCTTAGAAGAGCAGAAGCACATGAAAAACTAGAGCATTTCGAAGAGGCTATTGCTGATATGAAAAAAATCTTGGAACTCGATCCCTCAAATGACCAAGCCAAGAAGACCATTCGTCGCCTGGGGCCGCTGGCTGAAGAAAAGAGAGAAAAGATGAAAGAGGAGATGATTGGGAAGCTGAAAGATATGGGTAACTCTTTGTTGGGCCGTTTTGGAATGAGCGTGGACAACTTCAAATCTGTTAAAGATCCAAACACTGGCTCTTATTCTATTTCATTCCAACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

248

Amino Acids

27.6

Weight (kDa)

5.1

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30480 AT4G30480 AT4G30480
fragaria_vesca	FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_4g08690
malus_domestica	MD04G1009600.v1.1 MD16G1260600.v1.1
prunus_persica	Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.8G039000_v2.0.a1 Prupe.8G039000_v2.0.a1
pyrus_communis	pycom04g00740 pycom16g22830
rosa_chinensis	RchiOBHm_Chr4g0405181
rosa_laevigata	RLG00000008866
rosa_multiflora	Rmu_sc0004988.1_g000011 Rmu_ssc0000255.1_g000025
rosa_roxburghii	Rroxscaffold_5G00341850 Rroxscaffold_5G00349430
rosa_rugosa	Rorug04G0054700
rosa_samantha	Rh4AG129500 Rh4BG123300 Rh4CG136800 Rh4DG123000
rosa_wichuraiana	Rw4G010460 Rw5G038600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	195
AccB7I	CCANNNNNTGG	1 cut(s)	713
AciI	CCGC	2 cut(s)	4, 584
AclI	AACGTT	1 cut(s)	739
AclWI	GGATC	5 cut(s)	14, 114, 127, 533, 698
AcsI	RAATTY	1 cut(s)	43
AcuI	CTGAAG	1 cut(s)	612
AcyI	GRCGYC	1 cut(s)	192
AfeI	AGCGCT	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	713
AgsI	TTSAA	4 cut(s)	43, 202, 218, 691
AhdI	GACNNNNNGTC	1 cut(s)	570
AjnI	CCWGG	1 cut(s)	576
AjuI	GAANNNNNNNTTGG	2 cut(s)	512, 544
AluBI	AGCT	3 cut(s)	298, 455, 634
AluI	AGCT	3 cut(s)	298, 455, 634
Alw26I	GTCTC	2 cut(s)	14, 179
AlwI	GGATC	5 cut(s)	14, 114, 127, 533, 698
Aor51HI	AGCGCT	1 cut(s)	426
AoxI	GGCC	2 cut(s)	581, 661
ApoI	RAATTY	1 cut(s)	43
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
AspLEI	GCGC	2 cut(s)	316, 427
AspS9I	GGNCC	2 cut(s)	581, 661
AsuII	TTCGAA	3 cut(s)	93, 380, 498
BamHI	GGATCC	1 cut(s)	119
BbsI	GAAGAC	2 cut(s)	54, 569
BccI	CCATC	2 cut(s)	80, 334
BceAI	ACGGC	1 cut(s)	648
BciT130I	CCWGG	1 cut(s)	578
BcoDI	GTCTC	2 cut(s)	14, 179
BfaI	CTAG	2 cut(s)	428, 488
BfoI	RGCGCY	1 cut(s)	428
BisI	GCNGC	1 cut(s)	584
BlsI	GCNGC	1 cut(s)	585
Bme1390I	CCNGG	1 cut(s)	578
BmeRI	GACNNNNNGTC	1 cut(s)	570
BmgT120I	GGNCC	2 cut(s)	581, 661
BmiI	GGNNCC	2 cut(s)	121, 582
BmrFI	CCNGG	1 cut(s)	578
BmsI	GCATC	1 cut(s)	391
BpiI	GAAGAC	2 cut(s)	54, 569
Bpu14I	TTCGAA	3 cut(s)	93, 380, 498
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	1 cut(s)	713
Bse1I	ACTGG	2 cut(s)	102, 718
BseBI	CCWGG	1 cut(s)	578
BseDI	CCNNGG	1 cut(s)	577
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	1 cut(s)	713
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	2 cut(s)	102, 718
BseRI	GAGGAG	1 cut(s)	632
BshFI	GGCC	2 cut(s)	583, 663
BslI	CCNNNNNNNGG	1 cut(s)	713
BsmAI	GTCTC	2 cut(s)	14, 179
BsmI	GAATGC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	583, 663
Bsp119I	TTCGAA	3 cut(s)	93, 380, 498
Bsp143I	GATC	4 cut(s)	6, 119, 538, 703
BspACI	CCGC	2 cut(s)	4, 584
BspANI	GGCC	2 cut(s)	583, 663
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	2 cut(s)	121, 582
BspPI	GGATC	5 cut(s)	14, 114, 127, 533, 698
BspQI	GCTCTTC	1 cut(s)	460
BspT104I	TTCGAA	3 cut(s)	93, 380, 498
BsrI	ACTGG	2 cut(s)	102, 718
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	4 cut(s)	6, 119, 538, 703
BssNI	GRCGYC	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	4 cut(s)	128, 255, 291, 365
Bst6I	CTCTTC	3 cut(s)	270, 460, 495
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstBI	TTCGAA	3 cut(s)	93, 380, 498
BstC8I	GCNNGC	2 cut(s)	300, 588
BstDEI	CTNAG	2 cut(s)	180, 461
BstF5I	GGATG	1 cut(s)	406
BstH2I	RGCGCY	1 cut(s)	428
BstHHI	GCGC	2 cut(s)	316, 427
BstKTI	GATC	4 cut(s)	9, 122, 541, 706
BstMAI	GTCTC	2 cut(s)	14, 179
BstMBI	GATC	4 cut(s)	6, 119, 538, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	322, 365
BstNI	CCWGG	1 cut(s)	578
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	576
BstV2I	GAAGAC	2 cut(s)	54, 569
BstX2I	RGATCY	2 cut(s)	119, 703
BstYI	RGATCY	2 cut(s)	119, 703
BsuRI	GGCC	2 cut(s)	583, 663
BtsCI	GGATG	1 cut(s)	406
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	4 cut(s)	109, 268, 370, 711
Cac8I	GCNNGC	2 cut(s)	300, 588
CfoI	GCGC	2 cut(s)	316, 427
Cfr13I	GGNCC	2 cut(s)	581, 661
CviAII	CATG	2 cut(s)	322, 479
DdeI	CTNAG	2 cut(s)	180, 461
DpnI	GATC	4 cut(s)	8, 121, 540, 705
DpnII	GATC	4 cut(s)	6, 119, 538, 703
DriI	GACNNNNNGTC	1 cut(s)	570
Eam1104I	CTCTTC	3 cut(s)	270, 460, 495
Eam1105I	GACNNNNNGTC	1 cut(s)	570
EarI	CTCTTC	3 cut(s)	270, 460, 495
Eco47III	AGCGCT	1 cut(s)	426
Eco57I	CTGAAG	1 cut(s)	612
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	576
FaeI	CATG	2 cut(s)	325, 482
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FatI	CATG	2 cut(s)	321, 478
Fnu4HI	GCNGC	1 cut(s)	584
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	1 cut(s)	584
FspBI	CTAG	2 cut(s)	428, 488
GlaI	GCGC	2 cut(s)	315, 426
GluI	GCNGC	1 cut(s)	584
HaeII	RGCGCY	1 cut(s)	428
HaeIII	GGCC	2 cut(s)	583, 663
HhaI	GCGC	2 cut(s)	316, 427
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	325, 482
Hin6I	GCGC	2 cut(s)	314, 425
HinP1I	GCGC	2 cut(s)	314, 425
Hpy166II	GTNNAC	1 cut(s)	682
Hpy188I	TCNGA	2 cut(s)	85, 119
Hpy8I	GTNNAC	1 cut(s)	682
Hpy99I	CGWCG	5 cut(s)	143, 146, 194, 197, 576
HpyAV	CCTTC	2 cut(s)	202, 450
HpyCH4III	ACNGT	4 cut(s)	128, 255, 291, 365
HpyCH4IV	ACGT	2 cut(s)	192, 739
HpyCH4V	TGCA	3 cut(s)	368, 404, 417
HpyF10VI	GCNNNNNNNGC	2 cut(s)	322, 365
HpyF3I	CTNAG	2 cut(s)	180, 461
HpySE526I	ACGT	2 cut(s)	192, 739
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	325, 482
HspAI	GCGC	2 cut(s)	314, 425
Kzo9I	GATC	4 cut(s)	6, 119, 538, 703
LguI	GCTCTTC	1 cut(s)	460
LpnPI	CCDG	7 cut(s)	115, 167, 330, 563, 572, 590, 699
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	2 cut(s)	428, 488
MaeII	ACGT	2 cut(s)	192, 739
MaeIII	GTNAC	3 cut(s)	104, 353, 647
MalI	GATC	4 cut(s)	8, 121, 540, 705
MboI	GATC	4 cut(s)	6, 119, 538, 703
MboII	GAAGA	7 cut(s)	23, 54, 287, 477, 512, 574, 605
MflI	RGATCY	2 cut(s)	119, 703
MluCI	AATT	2 cut(s)	43, 338
MmeI	TCCRAC	2 cut(s)	90, 147
MnlI	CCTC	9 cut(s)	67, 91, 154, 236, 271, 391, 496, 553, 610
MseI	TTAA	1 cut(s)	699
MspA1I	CMGCKG	1 cut(s)	586
MspR9I	CCNGG	1 cut(s)	578
Mva1269I	GAATGC	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	578
MwoI	GCNNNNNNNGC	2 cut(s)	322, 365
NdeII	GATC	4 cut(s)	6, 119, 538, 703
NlaIII	CATG	2 cut(s)	325, 482
NlaIV	GGNNCC	2 cut(s)	121, 582
NmuCI	GTSAC	2 cut(s)	104, 353
NspI	RCATGY	1 cut(s)	325
NspV	TTCGAA	3 cut(s)	93, 380, 498
PciSI	GCTCTTC	1 cut(s)	460
PctI	GAATGC	1 cut(s)	419
PflFI	GACNNNGTC	1 cut(s)	191
PflMI	CCANNNNNTGG	1 cut(s)	713
PkrI	GCNGC	1 cut(s)	585
Psp1406I	AACGTT	1 cut(s)	739
Psp6I	CCWGG	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	2 cut(s)	121, 582
PspPI	GGNCC	2 cut(s)	581, 661
PsuI	RGATCY	2 cut(s)	119, 703
PsyI	GACNNNGTC	1 cut(s)	191
SapI	GCTCTTC	1 cut(s)	460
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	1 cut(s)	584
Sau3AI	GATC	4 cut(s)	6, 119, 538, 703
Sau96I	GGNCC	2 cut(s)	581, 661
ScrFI	CCNGG	1 cut(s)	578
SetI	ASST	6 cut(s)	195, 300, 312, 457, 636, 742
SfaNI	GCATC	1 cut(s)	391
SfuI	TTCGAA	3 cut(s)	93, 380, 498
Sse9I	AATT	2 cut(s)	43, 338
SsiI	CCGC	2 cut(s)	4, 584
SspMI	CTAG	2 cut(s)	428, 488
StyD4I	CCNGG	1 cut(s)	576
TaaI	ACNGT	4 cut(s)	128, 255, 291, 365
TaiI	ACGT	2 cut(s)	195, 742
TaqI	TCGA	5 cut(s)	9, 93, 380, 498, 537
TasI	AATT	2 cut(s)	43, 338
TauI	GCSGC	1 cut(s)	586
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TscAI	CASTG	4 cut(s)	109, 268, 370, 718
TseFI	GTSAC	2 cut(s)	104, 353
Tsp45I	GTSAC	2 cut(s)	104, 353
TspDTI	ATGAA	7 cut(s)	288, 432, 464, 495, 533, 626, 720
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	4 cut(s)	109, 268, 370, 718
Tth111I	GACNNNGTC	1 cut(s)	191
Van91I	CCANNNNNTGG	1 cut(s)	713
XapI	RAATTY	1 cut(s)	43
XceI	RCATGY	1 cut(s)	325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XspI	CTAG	2 cut(s)	428, 488
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.