Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004988.1

Orthogroup ID

OG0003372

Physical Location & Seq

Genomic Coordinates Forward (+)

32928 .. 34766

Gene Structure 1839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004988.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgaaaaaaatcttagaacttgatccttcaaatgaccaagccaggaaggccattcggtgcttggagccactggctgaagcaaagagagaaaagatgaaagaagggatgattattaagtcgaatagtgatttcgtgggcatttatactctttgcaggatttatagtgtcacagcgagagaaaaccctaaggtatgcggcgaggctgatttagaccgagagatcgcttcttgtccggcggcgacccgggcatctagtggcctcggggttcgccgacgccgtgcggaatgttacctttctacggcggcgtggatcgcaggtgctagactggggcgaattgtggtgatgctggatgtggcggcactgttccaggtgattgggtcgtggcggttgaatcgtggcggcgggatcatggaggagcaggcgcagcatggtcggcggagcaaagctggaactggttatgcaggccagcgtgtttggagagaaggctgggcctggaccttgtcaggcctgttgggctttgcatgggcttctctttggatcttcctagccttgaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

185

Amino Acids

20.5

Weight (kDa)

9.75

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30480 AT4G30480 AT4G30480
fragaria_vesca	FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_4g08690
malus_domestica	MD04G1009600.v1.1 MD16G1260600.v1.1
prunus_persica	Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.8G039000_v2.0.a1 Prupe.8G039000_v2.0.a1
pyrus_communis	pycom04g00740 pycom16g22830
rosa_chinensis	RchiOBHm_Chr4g0405181
rosa_laevigata	RLG00000008866
rosa_multiflora	Rmu_sc0004988.1_g000011 Rmu_ssc0000255.1_g000025
rosa_roxburghii	Rroxscaffold_5G00341850 Rroxscaffold_5G00349430
rosa_rugosa	Rorug04G0054700
rosa_samantha	Rh4AG129500 Rh4BG123300 Rh4CG136800 Rh4DG123000
rosa_wichuraiana	Rw4G010460 Rw5G038600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	305
Acc36I	ACCTGC	1 cut(s)	305
AciI	CCGC	9 cut(s)	195, 236, 281, 302, 356, 385, 399, 402, 436
AclWI	GGATC	4 cut(s)	17, 317, 413, 545
AcuI	CTGAAG	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	3 cut(s)	30, 391, 553
AjnI	CCWGG	3 cut(s)	41, 366, 491
AluBI	AGCT	1 cut(s)	446
AluI	AGCT	1 cut(s)	446
AlwI	GGATC	4 cut(s)	17, 317, 413, 545
Ama87I	CYCGRG	2 cut(s)	243, 260
AoxI	GGCC	5 cut(s)	48, 256, 463, 489, 505
ApeKI	GCWGC	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	2 cut(s)	489, 495
AsuC2I	CCSGG	2 cut(s)	244, 245
AsuHPI	GGTGA	2 cut(s)	352, 382
AvaI	CYCGRG	2 cut(s)	243, 260
AvaII	GGWCC	1 cut(s)	495
AxyI	CCTNAGG	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	436
BceAI	ACGGC	2 cut(s)	261, 315
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BciT130I	CCWGG	3 cut(s)	43, 368, 493
BcnI	CCSGG	2 cut(s)	244, 245
BfaI	CTAG	3 cut(s)	252, 321, 545
BfuAI	ACCTGC	1 cut(s)	305
BglI	GCCNNNNNGGC	2 cut(s)	47, 513
BisI	GCNGC	6 cut(s)	196, 237, 303, 357, 400, 425
BlsI	GCNGC	6 cut(s)	197, 238, 304, 358, 401, 426
Bme1390I	CCNGG	5 cut(s)	43, 244, 245, 368, 493
Bme18I	GGWCC	1 cut(s)	495
BmeT110I	CYCGRG	2 cut(s)	243, 260
BmgT120I	GGNCC	2 cut(s)	489, 495
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	5 cut(s)	43, 244, 245, 368, 493
BmrI	ACTGGG	1 cut(s)	335
BmsI	GCATC	2 cut(s)	257, 333
BmuI	ACTGGG	1 cut(s)	335
BpuMI	CCSGG	2 cut(s)	244, 245
BsaHI	GRCGYC	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	243, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	3 cut(s)	75, 330, 457
Bse21I	CCTNAGG	1 cut(s)	186
BseBI	CCWGG	3 cut(s)	43, 368, 493
BseDI	CCNNGG	2 cut(s)	243, 259
BseGI	GGATG	2 cut(s)	111, 355
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseNI	ACTGG	3 cut(s)	75, 330, 457
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	1 cut(s)	436
BseYI	CCCAGC	1 cut(s)	486
BshFI	GGCC	5 cut(s)	50, 258, 465, 491, 507
BsiHKCI	CYCGRG	2 cut(s)	243, 260
BsiSI	CCGG	2 cut(s)	233, 244
BslI	CCNNNNNNNGG	1 cut(s)	298
BsnI	GGCC	5 cut(s)	50, 258, 465, 491, 507
BsoBI	CYCGRG	2 cut(s)	243, 260
Bsp143I	GATC	5 cut(s)	22, 219, 309, 405, 537
BspACI	CCGC	9 cut(s)	195, 236, 281, 302, 356, 385, 399, 402, 436
BspANI	GGCC	5 cut(s)	50, 258, 465, 491, 507
BspLI	GGNNCC	1 cut(s)	66
BspMI	ACCTGC	1 cut(s)	305
BspPI	GGATC	4 cut(s)	17, 317, 413, 545
BsrI	ACTGG	3 cut(s)	75, 330, 457
BssECI	CCNNGG	2 cut(s)	243, 259
BssMI	GATC	5 cut(s)	22, 219, 309, 405, 537
BssNI	GRCGYC	1 cut(s)	274
Bst2UI	CCWGG	3 cut(s)	43, 368, 493
Bst4CI	ACNGT	1 cut(s)	363
BstACI	GRCGYC	1 cut(s)	274
BstC8I	GCNNGC	3 cut(s)	420, 463, 467
BstDEI	CTNAG	2 cut(s)	13, 186
BstF5I	GGATG	2 cut(s)	111, 355
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	5 cut(s)	25, 222, 312, 408, 540
BstMBI	GATC	5 cut(s)	22, 219, 309, 405, 537
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 245, 311, 424, 433, 513
BstNI	CCWGG	3 cut(s)	43, 368, 493
BstSCI	CCNGG	5 cut(s)	41, 242, 243, 366, 491
BstV1I	GCAGC	1 cut(s)	436
BstX2I	RGATCY	1 cut(s)	537
BstXI	CCANNNNNNTGG	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	537
Bsu36I	CCTNAGG	1 cut(s)	186
BsuRI	GGCC	5 cut(s)	50, 258, 465, 491, 507
BtsCI	GGATG	2 cut(s)	111, 355
BtsIMutI	CAGTG	2 cut(s)	68, 359
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	3 cut(s)	420, 463, 467
CfoI	GCGC	1 cut(s)	424
Cfr13I	GGNCC	2 cut(s)	489, 495
Cfr9I	CCCGGG	1 cut(s)	243
CseI	GACGC	1 cut(s)	282
CviAII	CATG	3 cut(s)	409, 428, 522
DdeI	CTNAG	2 cut(s)	13, 186
DpnI	GATC	5 cut(s)	24, 221, 311, 407, 539
DpnII	GATC	5 cut(s)	22, 219, 309, 405, 537
EciI	GGCGGA	1 cut(s)	451
Eco147I	AGGCCT	1 cut(s)	507
Eco47I	GGWCC	1 cut(s)	495
Eco57I	CTGAAG	1 cut(s)	96
Eco81I	CCTNAGG	1 cut(s)	186
Eco88I	CYCGRG	2 cut(s)	243, 260
EcoRII	CCWGG	3 cut(s)	41, 366, 491
FaeI	CATG	3 cut(s)	412, 431, 525
FaiI	YATR	7 cut(s)	144, 162, 193, 410, 429, 459, 523
FatI	CATG	3 cut(s)	408, 427, 521
FauI	CCCGC	1 cut(s)	395
Fnu4HI	GCNGC	6 cut(s)	196, 237, 303, 357, 400, 425
FokI	GGATG	2 cut(s)	118, 362
Fsp4HI	GCNGC	6 cut(s)	196, 237, 303, 357, 400, 425
FspBI	CTAG	3 cut(s)	252, 321, 545
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	6 cut(s)	196, 237, 303, 357, 400, 425
GsaI	CCCAGC	1 cut(s)	490
HaeIII	GGCC	5 cut(s)	50, 258, 465, 491, 507
HapII	CCGG	2 cut(s)	233, 244
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	1 cut(s)	424
Hin1I	GRCGYC	1 cut(s)	274
Hin1II	CATG	3 cut(s)	412, 431, 525
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HinfI	GANTC	1 cut(s)	391
HpaII	CCGG	2 cut(s)	233, 244
HphI	GGTGA	2 cut(s)	352, 382
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	4 cut(s)	36, 40, 95, 476
HpyCH4III	ACNGT	1 cut(s)	363
HpyCH4V	TGCA	3 cut(s)	153, 461, 521
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 245, 311, 424, 433, 513
HpyF3I	CTNAG	2 cut(s)	13, 186
Hsp92I	GRCGYC	1 cut(s)	274
Hsp92II	CATG	3 cut(s)	412, 431, 525
HspAI	GCGC	1 cut(s)	422
Kzo9I	GATC	5 cut(s)	22, 219, 309, 405, 537
LmnI	GCTCC	3 cut(s)	64, 415, 438
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	2 cut(s)	257, 333
MaeI	CTAG	3 cut(s)	252, 321, 545
MaeIII	GTNAC	2 cut(s)	166, 287
MalI	GATC	5 cut(s)	24, 221, 311, 407, 539
MboI	GATC	5 cut(s)	22, 219, 309, 405, 537
MboII	GAAGA	1 cut(s)	532
MflI	RGATCY	1 cut(s)	537
MluCI	AATT	2 cut(s)	333, 553
MnlI	CCTC	3 cut(s)	193, 269, 406
MseI	TTAA	2 cut(s)	114, 556
MspI	CCGG	2 cut(s)	233, 244
MspR9I	CCNGG	5 cut(s)	43, 244, 245, 368, 493
MvaI	CCWGG	3 cut(s)	43, 368, 493
MwoI	GCNNNNNNNGC	6 cut(s)	47, 245, 311, 424, 433, 513
NciI	CCSGG	2 cut(s)	244, 245
NdeII	GATC	5 cut(s)	22, 219, 309, 405, 537
NlaIII	CATG	3 cut(s)	412, 431, 525
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	166
PaqCI	CACCTGC	1 cut(s)	305
PceI	AGGCCT	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	391
PflFI	GACNNNGTC	1 cut(s)	499
PkrI	GCNGC	6 cut(s)	197, 238, 304, 358, 401, 426
Psp6I	CCWGG	3 cut(s)	41, 366, 491
PspFI	CCCAGC	1 cut(s)	486
PspGI	CCWGG	3 cut(s)	41, 366, 491
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	2 cut(s)	489, 495
PsuI	RGATCY	1 cut(s)	537
PsyI	GACNNNGTC	1 cut(s)	499
SaqAI	TTAA	2 cut(s)	114, 556
SatI	GCNGC	6 cut(s)	196, 237, 303, 357, 400, 425
Sau3AI	GATC	5 cut(s)	22, 219, 309, 405, 537
Sau96I	GGNCC	2 cut(s)	489, 495
ScrFI	CCNGG	5 cut(s)	43, 244, 245, 368, 493
SetI	ASST	6 cut(s)	192, 294, 319, 372, 448, 500
SfaNI	GCATC	2 cut(s)	257, 333
SinI	GGWCC	1 cut(s)	495
SmaI	CCCGGG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	333, 553
SseBI	AGGCCT	1 cut(s)	507
SsiI	CCGC	9 cut(s)	195, 236, 281, 302, 356, 385, 399, 402, 436
SspMI	CTAG	3 cut(s)	252, 321, 545
StuI	AGGCCT	1 cut(s)	507
StyD4I	CCNGG	5 cut(s)	41, 242, 243, 366, 491
TaaI	ACNGT	1 cut(s)	363
TaqI	TCGA	1 cut(s)	119
TaqII	GACCGA	1 cut(s)	228
TasI	AATT	2 cut(s)	333, 553
TauI	GCSGC	5 cut(s)	198, 239, 305, 359, 402
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	2 cut(s)	114, 556
Tru9I	TTAA	2 cut(s)	114, 556
TscAI	CASTG	2 cut(s)	75, 366
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	17, 110
TspMI	CCCGGG	1 cut(s)	243
TspRI	CASTG	2 cut(s)	75, 366
Tth111I	GACNNNGTC	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XmaI	CCCGGG	1 cut(s)	243
XspI	CTAG	3 cut(s)	252, 321, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.