Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013844

Physical Location & Seq

Genomic Coordinates Reverse (-)

8667933 .. 8671354

Gene Structure 3422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G108300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGCTCGGAAGAAGATCAGAGAATACGACTCCAAGAGGCTGCTCAAACAACACTTGAAACGAGTCGCCGGAATCGACCTCCAGATCAACTCAGCTCAGGTGACCGAGTCCACGGACATCGCTGAGTTGGCGAACACGGAGACATGGCTGTCGTCGACGAGGCTCGTGGTGAAGCCCGATATGTTGTTCGGGAAACGCGGGAAGAGTGGCCTTGTTGCTCTCAATTTGGATATGGCTCAGGTGGCCGAGTTTGTGAAGCAGCGTCTTGGCAAAGAGGTTGAGATGGGAGGCTGTAGGGCCCCTATAACGACGTTTATAGTGGAGCCATTTATGCCTCATGATCAAGAATTTTACCTTTCGATTGTTTCTGAAAGGCTTGGATCGACATTGAGCTTTTCGGAGTGTGGAGGAATTGAAATTGAAGAGAACTGGGGCAAGGTTAAGACTATATTTCTTCCGACCGAGAAGTCTTTGACAAATGAGGCTTGTGCTCCACTGATTGCCACTCTTCCATTGGAGGTCAGAGACAAAATTGGGGATTTCATAAAGGGCGTCTTCGCTGTATTTCAGGATTTGGATTTTAGCTTCCTGGAAATGAACCCGTTTACCTTGGTTAACGGTGAACCTTATCCATTGGATATGAGGGGGGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAATAAATGGGGTAACGTGGAGTTTCCACTGCCTTTTGGTAGAGTTTTAAGTCCTACAGAAACATTTATTCATTCTTTGGATGAAAAGACAAGTGCATCCTTAAAATTCACCGTGTTGAACCCAAAAGGACGCATCTGGACCATGGTAGCTGGAGGTGGTGCAAGTGTTATATATGCTGATACTGTTGGAGATTTGGGTTATGCTTCAGAACTGGGAAATTATGCAGAGTATAGTGGAGCTCCAAATGAGGAAGAGGTGTTGCAATATGCGAGAGTTGTGATTGATTGTGCAACTGCTGATCCAGATGGTCAGAAAAGAGCTCTTATTATTGGAGGTGGTATAGCTAATTTCACAGATGTTGCTGCTACATTTAATGGAATCATTAGAGCCCTCAGAGAGAAGGAATCCAAGCTAAAAGCAGCAAGAATGCATATCTTCGTGAGAAGGGGCGGTCCAAATTATCAAACTGGTTTGGCAAAGATGCGTGCGTTGGGAGAGGAACTTGGAGTTCCTCTTGAGGTTTATGGACCCGAGGCAACAATGACTGGAATTTGCAAGCAAGCAATTGAGTGCATCATGGGTGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

424

Amino Acids

46.57

Weight (kDa)

5.24

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09430
fragaria_vesca	FvH4_4g21220
malus_domestica	MD13G1143800.v1.1
prunus_persica	Prupe.1G108300_v2.0.a1 Prupe.6G110400_v2.0.a1
pyrus_communis	pycom13g12470
rosa_chinensis	RchiOBHm_Chr4g0426831
rosa_laevigata	RLG00000007274
rosa_multiflora	Rmu_sc0000953.1_g000013 Rmu_sc0004341.1_g000006
rosa_roxburghii	Rroxscaffold_5G00368800
rosa_rugosa	Rorug04G0215200
rosa_samantha	Rh4AG270200 Rh4BG276500 Rh4CG291300 Rh4DG273800
rosa_wichuraiana	Rw4G023450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	148, 466
AccI	GTMKAC	1 cut(s)	155
AccII	CGCG	1 cut(s)	198
AciI	CCGC	2 cut(s)	198, 1131
AclWI	GGATC	2 cut(s)	388, 974
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	3 cut(s)	347, 785, 1230
AcuI	CTGAAG	1 cut(s)	870
AcyI	GRCGYC	1 cut(s)	552
AgsI	TTSAA	6 cut(s)	58, 416, 422, 673, 682, 799
AjnI	CCWGG	1 cut(s)	588
AluBI	AGCT	9 cut(s)	95, 393, 585, 652, 830, 920, 1001, 1025, 1093
AluI	AGCT	9 cut(s)	95, 393, 585, 652, 830, 920, 1001, 1025, 1093
Alw21I	GWGCWC	3 cut(s)	493, 922, 1003
Alw26I	GTCTC	2 cut(s)	134, 519
AlwI	GGATC	2 cut(s)	388, 974
Ama87I	CYCGRG	1 cut(s)	1211
AoxI	GGCC	3 cut(s)	208, 243, 297
ApaI	GGGCCC	1 cut(s)	301
ApeKI	GCWGC	5 cut(s)	40, 259, 665, 1043, 1100
ApoI	RAATTY	3 cut(s)	347, 785, 1230
AspS9I	GGNCC	5 cut(s)	297, 298, 819, 1133, 1208
AsuHPI	GGTGA	4 cut(s)	112, 181, 632, 781
AvaI	CYCGRG	1 cut(s)	1211
AvaII	GGWCC	3 cut(s)	819, 1133, 1208
BaeGI	GKGCMC	1 cut(s)	301
BanII	GRGCYC	4 cut(s)	301, 922, 1003, 1072
BauI	CACGAG	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	547
Bbv12I	GWGCWC	3 cut(s)	493, 922, 1003
BbvI	GCAGC	5 cut(s)	27, 271, 652, 1030, 1112
BccI	CCATC	2 cut(s)	277, 980
BciT130I	CCWGG	1 cut(s)	590
BclI	TGATCA	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	134, 519
BfaI	CTAG	1 cut(s)	653
BfmI	CTRYAG	2 cut(s)	292, 735
BisI	GCNGC	5 cut(s)	41, 260, 666, 1044, 1101
BlsI	GCNGC	5 cut(s)	42, 261, 667, 1045, 1102
Bme1390I	CCNGG	1 cut(s)	590
Bme18I	GGWCC	3 cut(s)	819, 1133, 1208
BmeT110I	CYCGRG	1 cut(s)	1211
BmgT120I	GGNCC	5 cut(s)	297, 298, 819, 1133, 1208
BmiI	GGNNCC	4 cut(s)	299, 300, 324, 1210
BmrFI	CCNGG	1 cut(s)	590
BmrI	ACTGGG	2 cut(s)	439, 902
BmsI	GCATC	4 cut(s)	785, 822, 1152, 1263
BmuI	ACTGGG	2 cut(s)	439, 902
BpiI	GAAGAC	1 cut(s)	547
BpmI	CTGGAG	2 cut(s)	65, 852
Bpu10I	CCTNAGC	2 cut(s)	96, 237
BpuEI	CTTGAG	1 cut(s)	1217
BsaHI	GRCGYC	1 cut(s)	552
BsaJI	CCNNGG	4 cut(s)	111, 609, 822, 1212
Bse1I	ACTGG	4 cut(s)	434, 897, 1153, 1231
BseBI	CCWGG	1 cut(s)	590
BseDI	CCNNGG	4 cut(s)	111, 609, 822, 1212
BseGI	GGATG	2 cut(s)	766, 776
BseMII	CTCAG	5 cut(s)	105, 110, 114, 251, 1087
BseNI	ACTGG	4 cut(s)	434, 897, 1153, 1231
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	5 cut(s)	27, 271, 652, 1030, 1112
Bsh1236I	CGCG	1 cut(s)	198
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	3 cut(s)	210, 245, 299
BsiEI	CGRYCG	1 cut(s)	462
BsiHKAI	GWGCWC	3 cut(s)	493, 922, 1003
BsiHKCI	CYCGRG	1 cut(s)	1211
BsiSI	CCGG	1 cut(s)	69
BsmAI	GTCTC	2 cut(s)	134, 519
BsmI	GAATGC	1 cut(s)	1113
BsnI	GGCC	3 cut(s)	210, 245, 299
BsoBI	CYCGRG	1 cut(s)	1211
Bsp120I	GGGCCC	1 cut(s)	297
Bsp1286I	GDGCHC	5 cut(s)	301, 493, 922, 1003, 1072
Bsp143I	GATC	5 cut(s)	15, 84, 340, 380, 979
Bsp19I	CCATGG	1 cut(s)	822
BspACI	CCGC	2 cut(s)	198, 1131
BspANI	GGCC	3 cut(s)	210, 245, 299
BspCNI	CTCAG	5 cut(s)	104, 109, 115, 250, 1086
BspFNI	CGCG	1 cut(s)	198
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	4 cut(s)	299, 300, 324, 1210
BspPI	GGATC	2 cut(s)	388, 974
BsrI	ACTGG	4 cut(s)	434, 897, 1153, 1231
BssECI	CCNNGG	4 cut(s)	111, 609, 822, 1212
BssMI	GATC	5 cut(s)	15, 84, 340, 380, 979
BssNI	GRCGYC	1 cut(s)	552
BssSI	CACGAG	1 cut(s)	164
BssT1I	CCWWGG	2 cut(s)	609, 822
Bst2BI	CACGAG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	590
Bst4CI	ACNGT	3 cut(s)	620, 793, 865
Bst6I	CTCTTC	4 cut(s)	197, 417, 513, 927
BstACI	GRCGYC	1 cut(s)	552
BstC8I	GCNNGC	3 cut(s)	1167, 1238, 1242
BstDEI	CTNAG	5 cut(s)	91, 96, 123, 237, 1073
BstDSI	CCRYGG	2 cut(s)	111, 822
BstEII	GGTNACC	1 cut(s)	100
BstF5I	GGATG	2 cut(s)	766, 776
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	5 cut(s)	18, 87, 343, 383, 982
BstMAI	GTCTC	2 cut(s)	134, 519
BstMBI	GATC	5 cut(s)	15, 84, 340, 380, 979
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 242, 331
BstNI	CCWGG	1 cut(s)	590
BstPI	GGTNACC	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	588
BstSFI	CTRYAG	2 cut(s)	292, 735
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	5 cut(s)	27, 271, 652, 1030, 1112
BstV2I	GAAGAC	1 cut(s)	547
BsuRI	GGCC	3 cut(s)	210, 245, 299
BtgI	CCRYGG	2 cut(s)	111, 822
BtgZI	GCGATG	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	766, 776
BtsI	GCAGTG	2 cut(s)	660, 707
BtsIMutI	CAGTG	3 cut(s)	494, 660, 707
Cac8I	GCNNGC	3 cut(s)	1167, 1238, 1242
CciI	TCATGA	1 cut(s)	337
Cfr13I	GGNCC	5 cut(s)	297, 298, 819, 1133, 1208
CseI	GACGC	3 cut(s)	251, 541, 819
CviAII	CATG	4 cut(s)	144, 338, 823, 1258
DdeI	CTNAG	5 cut(s)	91, 96, 123, 237, 1073
DpnI	GATC	5 cut(s)	17, 86, 342, 382, 981
DpnII	GATC	5 cut(s)	15, 84, 340, 380, 979
DrdI	GACNNNNNNGTC	2 cut(s)	148, 466
DseDI	GACNNNNNNGTC	2 cut(s)	148, 466
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	4 cut(s)	197, 417, 513, 927
EarI	CTCTTC	4 cut(s)	197, 417, 513, 927
Ecl136II	GAGCTC	2 cut(s)	920, 1001
Eco130I	CCWWGG	2 cut(s)	609, 822
Eco24I	GRGCYC	4 cut(s)	301, 922, 1003, 1072
Eco47I	GGWCC	3 cut(s)	819, 1133, 1208
Eco53kI	GAGCTC	2 cut(s)	920, 1001
Eco57I	CTGAAG	1 cut(s)	870
Eco88I	CYCGRG	1 cut(s)	1211
Eco91I	GGTNACC	1 cut(s)	100
EcoICRI	GAGCTC	2 cut(s)	920, 1001
EcoO109I	RGGNCCY	2 cut(s)	297, 298
EcoO65I	GGTNACC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	588
EcoT14I	CCWWGG	2 cut(s)	609, 822
EcoT22I	ATGCAT	1 cut(s)	1113
EcoT38I	GRGCYC	4 cut(s)	301, 922, 1003, 1072
ErhI	CCWWGG	2 cut(s)	609, 822
FaeI	CATG	4 cut(s)	147, 341, 826, 1261
FalI	AAGNNNNNCTT	2 cut(s)	539, 571
FatI	CATG	4 cut(s)	143, 337, 822, 1257
FauI	CCCGC	1 cut(s)	191
FbaI	TGATCA	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	155
Fnu4HI	GCNGC	5 cut(s)	41, 260, 666, 1044, 1101
FokI	GGATG	2 cut(s)	763, 773
FriOI	GRGCYC	4 cut(s)	301, 922, 1003, 1072
Fsp4HI	GCNGC	5 cut(s)	41, 260, 666, 1044, 1101
FspBI	CTAG	1 cut(s)	653
GluI	GCNGC	5 cut(s)	41, 260, 666, 1044, 1101
GsuI	CTGGAG	2 cut(s)	65, 852
HaeIII	GGCC	3 cut(s)	210, 245, 299
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	3 cut(s)	251, 541, 819
Hin1I	GRCGYC	1 cut(s)	552
Hin1II	CATG	4 cut(s)	147, 341, 826, 1261
HincII	GTYRAC	2 cut(s)	156, 616
HindII	GTYRAC	2 cut(s)	156, 616
HinfI	GANTC	6 cut(s)	29, 63, 72, 107, 1059, 1085
HpaI	GTTAAC	1 cut(s)	616
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	4 cut(s)	112, 181, 632, 781
Hpy166II	GTNNAC	5 cut(s)	111, 156, 606, 616, 623
Hpy188I	TCNGA	9 cut(s)	9, 20, 370, 400, 459, 524, 889, 993, 1076
Hpy8I	GTNNAC	5 cut(s)	111, 156, 606, 616, 623
Hpy99I	CGWCG	3 cut(s)	157, 160, 313
HpyAV	CCTTC	2 cut(s)	1075, 1119
HpyCH4III	ACNGT	3 cut(s)	620, 793, 865
HpyCH4IV	ACGT	2 cut(s)	311, 696
HpyCH4V	TGCA	8 cut(s)	776, 842, 905, 943, 971, 1111, 1236, 1254
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 242, 331
HpyF3I	CTNAG	5 cut(s)	91, 96, 123, 237, 1073
HpySE526I	ACGT	2 cut(s)	311, 696
Hsp92I	GRCGYC	1 cut(s)	552
Hsp92II	CATG	4 cut(s)	147, 341, 826, 1261
Ksp22I	TGATCA	1 cut(s)	340
KspAI	GTTAAC	1 cut(s)	616
Kzo9I	GATC	5 cut(s)	15, 84, 340, 380, 979
LmnI	GCTCC	5 cut(s)	322, 496, 649, 917, 925
Lsp1109I	GCAGC	5 cut(s)	27, 271, 652, 1030, 1112
LweI	GCATC	4 cut(s)	785, 822, 1152, 1263
MaeI	CTAG	1 cut(s)	653
MaeII	ACGT	2 cut(s)	311, 696
MaeIII	GTNAC	2 cut(s)	100, 692
MalI	GATC	5 cut(s)	17, 86, 342, 382, 981
MboI	GATC	5 cut(s)	15, 84, 340, 380, 979
MboII	GAAGA	9 cut(s)	22, 25, 214, 434, 446, 500, 547, 944, 1108
MfeI	CAATTG	1 cut(s)	1245
MhlI	GDGCHC	5 cut(s)	301, 493, 922, 1003, 1072
MlyI	GAGTC	3 cut(s)	23, 72, 116
MmeI	TCCRAC	2 cut(s)	482, 847
Mph1103I	ATGCAT	1 cut(s)	1113
MseI	TTAA	5 cut(s)	441, 615, 728, 782, 1053
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	590
MunI	CAATTG	1 cut(s)	1245
Mva1269I	GAATGC	1 cut(s)	1113
MvaI	CCWGG	1 cut(s)	590
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	3 cut(s)	128, 242, 331
NcoI	CCATGG	1 cut(s)	822
NdeII	GATC	5 cut(s)	15, 84, 340, 380, 979
NlaIII	CATG	4 cut(s)	147, 341, 826, 1261
NlaIV	GGNNCC	4 cut(s)	299, 300, 324, 1210
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	1113
PagI	TCATGA	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	1113
PfeI	GAWTC	3 cut(s)	72, 1059, 1085
PflFI	GACNNNGTC	1 cut(s)	106
PfoI	TCCNGGA	1 cut(s)	588
PkrI	GCNGC	5 cut(s)	42, 261, 667, 1045, 1102
PleI	GAGTC	3 cut(s)	23, 71, 115
PpsI	GAGTC	3 cut(s)	23, 71, 115
Psp124BI	GAGCTC	2 cut(s)	922, 1003
Psp6I	CCWGG	1 cut(s)	588
PspEI	GGTNACC	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	588
PspN4I	GGNNCC	4 cut(s)	299, 300, 324, 1210
PspOMI	GGGCCC	1 cut(s)	297
PspPI	GGNCC	5 cut(s)	297, 298, 819, 1133, 1208
PsyI	GACNNNGTC	1 cut(s)	106
SacI	GAGCTC	2 cut(s)	922, 1003
SalI	GTCGAC	1 cut(s)	154
SaqAI	TTAA	5 cut(s)	441, 615, 728, 782, 1053
SatI	GCNGC	5 cut(s)	41, 260, 666, 1044, 1101
Sau3AI	GATC	5 cut(s)	15, 84, 340, 380, 979
Sau96I	GGNCC	5 cut(s)	297, 298, 819, 1133, 1208
SchI	GAGTC	3 cut(s)	23, 72, 116
ScrFI	CCNGG	1 cut(s)	590
SduI	GDGCHC	5 cut(s)	301, 493, 922, 1003, 1072
SfaNI	GCATC	4 cut(s)	785, 822, 1152, 1263
SfcI	CTRYAG	2 cut(s)	292, 735
SgrDI	CGTCGACG	1 cut(s)	154
SinI	GGWCC	3 cut(s)	819, 1133, 1208
SmlI	CTYRAG	1 cut(s)	1196
SmoI	CTYRAG	1 cut(s)	1196
SsiI	CCGC	2 cut(s)	198, 1131
SspMI	CTAG	1 cut(s)	653
SstI	GAGCTC	2 cut(s)	922, 1003
StyD4I	CCNGG	1 cut(s)	588
StyI	CCWWGG	2 cut(s)	609, 822
TaaI	ACNGT	3 cut(s)	620, 793, 865
TaiI	ACGT	2 cut(s)	314, 699
TaqI	TCGA	4 cut(s)	75, 155, 359, 383
TaqII	GACCGA	2 cut(s)	119, 476
TfiI	GAWTC	3 cut(s)	72, 1059, 1085
Tru1I	TTAA	5 cut(s)	441, 615, 728, 782, 1053
Tru9I	TTAA	5 cut(s)	441, 615, 728, 782, 1053
TscAI	CASTG	3 cut(s)	501, 667, 714
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	5 cut(s)	40, 259, 665, 1043, 1100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	4 cut(s)	532, 611, 740, 777
TspGWI	ACGGA	2 cut(s)	128, 152
TspRI	CASTG	3 cut(s)	501, 667, 714
Tth111I	GACNNNGTC	1 cut(s)	106
VpaK11BI	GGWCC	3 cut(s)	819, 1133, 1208
XapI	RAATTY	3 cut(s)	347, 785, 1230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	155
XspI	CTAG	1 cut(s)	653
Zsp2I	ATGCAT	1 cut(s)	1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.