Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013844

Physical Location & Seq

Genomic Coordinates Forward (+)

37266961 .. 37267473

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0215200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCCTGGGAGCTTCTTGGAGAAGGTTTTGGCTTGGGATTTGGGCCTGGATGGCTTGGTGGCGAGTCCGAACGACGGAGCCTCAGGCCGGTGGTTGCGTGTACAGGGGTGGGGCACCTCATCAAGGGATTTCCAGATCCGGCGAGTCGAAGGTGACTGGGCGGCGGTGGAGGTTTCCTGGATCGGGGAGCACGACGTGGTGCAGTGGTTTCTGTGGCGGCCTAGCTTGGTGTGGGGCTTTTGCGACTCCGGGTGTGGCGGCTGGGGTTGTCGAGGCGTGGGTCGTTGGGACGACGTTGGGGTGCGGCGGAGGAGACCACTGGAACTACGCCGGAGTTGTACGCATGGCCGGTCGGCTGAGGAAGATGAAGTTTGGGCTTGGGCCAAACCAATCTTTGCCGGACCCGAGTTTTGGATCCCTTTTCATGGGGTTGGGGCTGCTATGGTGGGCTGGGGTTCTGCCCTAGTCCATTGCTATGTTGGGCTAGGGTTTAGGCCTTTGGCCCAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

170

Amino Acids

18.98

Weight (kDa)

6.41

Isoelectric Point (pI)

57.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09430
fragaria_vesca	FvH4_4g21220
malus_domestica	MD13G1143800.v1.1
prunus_persica	Prupe.1G108300_v2.0.a1 Prupe.6G110400_v2.0.a1
pyrus_communis	pycom13g12470
rosa_chinensis	RchiOBHm_Chr4g0426831
rosa_laevigata	RLG00000007274
rosa_multiflora	Rmu_sc0000953.1_g000013 Rmu_sc0004341.1_g000006
rosa_roxburghii	Rroxscaffold_5G00368800
rosa_rugosa	Rorug04G0215200
rosa_samantha	Rh4AG270200 Rh4BG276500 Rh4CG291300 Rh4DG273800
rosa_wichuraiana	Rw4G023450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AciI	CCGC	6 cut(s)	161, 164, 217, 258, 304, 307
AclWI	GGATC	4 cut(s)	130, 188, 409, 422
AcoI	YGGCCR	1 cut(s)	346
AdeI	CACNNNGTG	1 cut(s)	196
AfaI	GTAC	2 cut(s)	102, 340
AfiI	CCNNNNNNNGG	6 cut(s)	74, 87, 123, 183, 411, 425
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	3 cut(s)	4, 45, 176
AluBI	AGCT	2 cut(s)	12, 225
AluI	AGCT	2 cut(s)	12, 225
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	4 cut(s)	130, 188, 409, 422
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	7 cut(s)	43, 85, 218, 346, 381, 494, 501
ApeKI	GCWGC	1 cut(s)	437
ArsI	GACNNNNNNTTYG	2 cut(s)	393, 425
AspS9I	GGNCC	4 cut(s)	43, 381, 401, 502
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	401
AxyI	CCTNAGG	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	116
BamHI	GGATCC	1 cut(s)	414
BanI	GGYRCC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	3 cut(s)	6, 47, 178
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	3 cut(s)	222, 464, 485
BglI	GCCNNNNNGGC	1 cut(s)	51
BisI	GCNGC	5 cut(s)	162, 218, 259, 305, 438
BlsI	GCNGC	5 cut(s)	163, 219, 260, 306, 439
Bme1390I	CCNGG	4 cut(s)	6, 47, 178, 250
Bme18I	GGWCC	1 cut(s)	401
BmeT110I	CYCGRG	1 cut(s)	404
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	4 cut(s)	43, 381, 401, 502
BmiI	GGNNCC	4 cut(s)	79, 115, 403, 416
BmrFI	CCNGG	4 cut(s)	6, 47, 178, 250
BmrI	ACTGGG	1 cut(s)	166
BmuI	ACTGGG	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	250
BsaI	GGTCTC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	6 cut(s)	74, 87, 123, 183, 411, 425
Bse118I	RCCGGY	2 cut(s)	87, 348
Bse1I	ACTGG	2 cut(s)	161, 324
Bse21I	CCTNAGG	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	469
BseBI	CCWGG	3 cut(s)	6, 47, 178
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	6 cut(s)	74, 87, 123, 183, 411, 425
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	2 cut(s)	96, 348
BseNI	ACTGG	2 cut(s)	161, 324
BseRI	GAGGAG	1 cut(s)	325
BseSI	GKGCMC	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	424
BseYI	CCCAGC	2 cut(s)	261, 450
BsgI	GTGCAG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	353
BshFI	GGCC	7 cut(s)	45, 87, 220, 348, 383, 496, 503
BshNI	GGYRCC	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	6 cut(s)	88, 139, 249, 331, 349, 399
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	6 cut(s)	74, 87, 123, 183, 411, 425
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	7 cut(s)	45, 87, 220, 348, 383, 496, 503
Bso31I	GGTCTC	1 cut(s)	307
BsoBI	CYCGRG	1 cut(s)	404
Bsp1286I	GDGCHC	2 cut(s)	116, 192
Bsp1407I	TGTACA	1 cut(s)	100
Bsp143I	GATC	3 cut(s)	135, 180, 414
BspACI	CCGC	6 cut(s)	161, 164, 217, 258, 304, 307
BspANI	GGCC	7 cut(s)	45, 87, 220, 348, 383, 496, 503
BspCNI	CTCAG	2 cut(s)	95, 349
BspLI	GGNNCC	4 cut(s)	79, 115, 403, 416
BspPI	GGATC	4 cut(s)	130, 188, 409, 422
BspT107I	GGYRCC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	469
BsrFI	RCCGGY	2 cut(s)	87, 348
BsrGI	TGTACA	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	161, 324
BssAI	RCCGGY	2 cut(s)	87, 348
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	3 cut(s)	135, 180, 414
Bst2UI	CCWGG	3 cut(s)	6, 47, 178
BstAUI	TGTACA	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	82, 357
BstENI	CCTNNNNNAGG	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	3 cut(s)	138, 183, 417
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	3 cut(s)	135, 180, 414
BstMCI	CGRYCG	1 cut(s)	353
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	3 cut(s)	6, 47, 178
BstSCI	CCNGG	4 cut(s)	4, 45, 176, 248
BstSLI	GKGCMC	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	424
BstX2I	RGATCY	2 cut(s)	135, 414
BstYI	RGATCY	2 cut(s)	135, 414
Bsu36I	CCTNAGG	1 cut(s)	82
BsuRI	GGCC	7 cut(s)	45, 87, 220, 348, 383, 496, 503
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	2 cut(s)	209, 317
Cfr10I	RCCGGY	2 cut(s)	87, 348
Cfr13I	GGNCC	4 cut(s)	43, 381, 401, 502
Csp6I	GTAC	2 cut(s)	101, 339
CviAII	CATG	2 cut(s)	344, 425
CviQI	GTAC	2 cut(s)	101, 339
DdeI	CTNAG	2 cut(s)	82, 357
DpnI	GATC	3 cut(s)	137, 182, 416
DpnII	GATC	3 cut(s)	135, 180, 414
DraIII	CACNNNGTG	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	346
EciI	GGCGGA	1 cut(s)	322
Eco147I	AGGCCT	1 cut(s)	496
Eco31I	GGTCTC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	401
Eco81I	CCTNAGG	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	404
EcoNI	CCTNNNNNAGG	1 cut(s)	121
EcoRII	CCWGG	3 cut(s)	4, 45, 176
FaeI	CATG	2 cut(s)	347, 428
FaiI	YATR	4 cut(s)	345, 426, 443, 477
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	2 cut(s)	343, 424
Fnu4HI	GCNGC	5 cut(s)	162, 218, 259, 305, 438
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	5 cut(s)	162, 218, 259, 305, 438
FspBI	CTAG	3 cut(s)	222, 464, 485
GluI	GCNGC	5 cut(s)	162, 218, 259, 305, 438
GsaI	CCCAGC	2 cut(s)	265, 454
HaeIII	GGCC	7 cut(s)	45, 87, 220, 348, 383, 496, 503
HapII	CCGG	6 cut(s)	88, 139, 249, 331, 349, 399
Hin1II	CATG	2 cut(s)	347, 428
HinfI	GANTC	3 cut(s)	64, 144, 245
HpaII	CCGG	6 cut(s)	88, 139, 249, 331, 349, 399
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	3 cut(s)	77, 197, 296
HpyAV	CCTTC	2 cut(s)	16, 143
HpyCH4IV	ACGT	2 cut(s)	195, 294
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	2 cut(s)	82, 357
HpySE526I	ACGT	2 cut(s)	195, 294
Hsp92II	CATG	2 cut(s)	347, 428
Kzo9I	GATC	3 cut(s)	135, 180, 414
LmnI	GCTCC	3 cut(s)	9, 77, 187
Lsp1109I	GCAGC	1 cut(s)	424
MaeI	CTAG	3 cut(s)	222, 464, 485
MaeII	ACGT	2 cut(s)	195, 294
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	3 cut(s)	137, 182, 416
MboI	GATC	3 cut(s)	135, 180, 414
MboII	GAAGA	1 cut(s)	374
MflI	RGATCY	2 cut(s)	135, 414
MhlI	GDGCHC	2 cut(s)	116, 192
MlyI	GAGTC	3 cut(s)	73, 153, 239
MnlI	CCTC	6 cut(s)	91, 127, 163, 266, 303, 352
MslI	CAYNNNNRTG	1 cut(s)	474
MspI	CCGG	6 cut(s)	88, 139, 249, 331, 349, 399
MspR9I	CCNGG	4 cut(s)	6, 47, 178, 250
MvaI	CCWGG	3 cut(s)	6, 47, 178
MwoI	GCNNNNNNNGC	1 cut(s)	51
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	3 cut(s)	135, 180, 414
NlaIII	CATG	2 cut(s)	347, 428
NlaIV	GGNNCC	4 cut(s)	79, 115, 403, 416
NmuCI	GTSAC	1 cut(s)	152
PceI	AGGCCT	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	5 cut(s)	163, 219, 260, 306, 439
PleI	GAGTC	3 cut(s)	72, 152, 239
PpsI	GAGTC	3 cut(s)	72, 152, 239
Psp6I	CCWGG	3 cut(s)	4, 45, 176
PspFI	CCCAGC	2 cut(s)	261, 450
PspGI	CCWGG	3 cut(s)	4, 45, 176
PspN4I	GGNNCC	4 cut(s)	79, 115, 403, 416
PspPI	GGNCC	4 cut(s)	43, 381, 401, 502
PsuI	RGATCY	2 cut(s)	135, 414
RsaI	GTAC	2 cut(s)	102, 340
RsaNI	GTAC	2 cut(s)	101, 339
RseI	CAYNNNNRTG	1 cut(s)	474
SatI	GCNGC	5 cut(s)	162, 218, 259, 305, 438
Sau3AI	GATC	3 cut(s)	135, 180, 414
Sau96I	GGNCC	4 cut(s)	43, 381, 401, 502
SchI	GAGTC	3 cut(s)	73, 153, 239
ScrFI	CCNGG	4 cut(s)	6, 47, 178, 250
SduI	GDGCHC	2 cut(s)	116, 192
SetI	ASST	8 cut(s)	14, 27, 119, 154, 174, 198, 227, 297
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	474
SseBI	AGGCCT	1 cut(s)	496
SsiI	CCGC	6 cut(s)	161, 164, 217, 258, 304, 307
SspMI	CTAG	3 cut(s)	222, 464, 485
StuI	AGGCCT	1 cut(s)	496
StyD4I	CCNGG	4 cut(s)	4, 45, 176, 248
TaiI	ACGT	2 cut(s)	198, 297
TaqI	TCGA	2 cut(s)	147, 271
TatI	WGTACW	1 cut(s)	100
TauI	GCSGC	4 cut(s)	164, 220, 261, 307
TscAI	CASTG	2 cut(s)	209, 324
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	2 cut(s)	381, 413
TspGWI	ACGGA	1 cut(s)	90
TspRI	CASTG	2 cut(s)	209, 324
VpaK11BI	GGWCC	1 cut(s)	401
XagI	CCTNNNNNAGG	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XspI	CTAG	3 cut(s)	222, 464, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.