Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0013844

Physical Location & Seq

Genomic Coordinates Forward (+)

54962362 .. 54965555

Gene Structure 3194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG291300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGCCAGCACACACTACTGTCAACTATATCGTCAATCCTAATCGACTTTCATCACCACCAGCCAGATATCAGACCCGACCCGAGTCCGTGATCGGAGGACCCGAAATGGCGCGGAAGAAGATCAGAGAGTACGATTCGAAGAGACTGCTGAAGCAGCACTTGAAGCGAGTCGCCGGAATCGACCTCCAGATCAACTCGGCTCAGGTGACGGAGGCGACCGACTTCACCGAATTGGCCAACAACGAGACATGGCTGTCGTCGACCAGACTCGTCGTCAAGCCGGACATGCTGTTCGGGAAGCGCGGGAAGAGTGGCCTCGTCGCGCTCAATTTGGACATGGCTCAGGTCGCCGACTTCGTCAAGCAGCGTCTCGGTAAGGAGGTTGAGATGGGAGGGTGTAAGGCGCCTATAACGACGTTTATAGTGGAGCCGTTTATGCCTCATGACCAAGAGTTTTACCTCTCGATTGTATCCGATAGGCTTGGAAGCACGATAAGCTTTTCGGAGTGCGGAGGTATTGAAATTGAAGAGAATTGGGACAAGGTCAAGACTATTTTTCTTCCAACCGAGAAGTCTCTGACGAATGAGGCTTGTGCTCCGCTGATTGCTACTCTTCCACTGGAGGTCAAGGAGAAAATTGGAGATTTCATAAAAGCCGTATTTGCTGTATTTCAGGATTTGGATTTTAGCTTCCTGGAAATGAACCCGTTTACCTTGGTTAATGGTGAACCTTTTCCATTAGATATGAGGGGGGAGCTAGATGACACTGCAGCTTTCAAGAACTTCAACAAATGGGGTAATGTGGAGTTTCCACTGCCTTTTGGCAGAGTTTTAAGTCCAACAGAAACATTTATTCATACTTTGGATGAAAAGACAAGTGCGTCCTTAAAATTCACAGTGCTGAATCCAAAAGGACGCATCTGGACCATGGTAGCTGGAGGTGGTGCAAGCGTTATTTATGCTGATACTGTTGGAGATTTGGGTTATGCATCAGAACTTGGAAACTATGCAGAGTATAGTGGAGCTCCAAATGAAGAAGAGGTGTTGCAATATGCAAGAGTAGTGATTGATTGTGCAACAGCAAATCCAGATGGTCGTAAAAGAGCTCTTCTGATTGGAGGTGGTATAGCTAATTTCACAGATGTTGCTGCTACATTTAATGGAATTATTAGAGCGCTGAAGGAGAAGGTAATGGCACATTTATATATCAAAGATCTATTTTGTTGGTTTCATTTTATTCAGTATATGAGTATATGCCTAGATCTCAGTTTATCTCTATTTCTGACATCAAAGGAATCCAAGCTCAAAGCGTCGAGAATGCATATATATGTAAGAAGGGGTGGTCCAAACTATCAAACTGGTTTGGCAAAGATGCGTGCATTAGGAGATGAACTTGGTGTTCCTCTTGAGGTTTATGGGCCTGAGGCAACTATGACAGGAATTTGTAAGGAAGCAATTGATTGCGTCATGAGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

492

Amino Acids

54.57

Weight (kDa)

5.61

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synth_N	PF24948	37 - 265	1.6e-73	ATP-citrate synthase ATP-grasp domain
ATP-grasp_2	PF08442	41 - 238	8.3e-19	ATP-grasp domain
Citrate_bind	PF16114	276 - 397	1.3e-58	ATP citrate lyase citrate-binding
Citrate_bind	PF16114	429 - 487	2.9e-18	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09430
fragaria_vesca	FvH4_4g21220
malus_domestica	MD13G1143800.v1.1
prunus_persica	Prupe.1G108300_v2.0.a1 Prupe.6G110400_v2.0.a1
pyrus_communis	pycom13g12470
rosa_chinensis	RchiOBHm_Chr4g0426831
rosa_laevigata	RLG00000007274
rosa_multiflora	Rmu_sc0000953.1_g000013 Rmu_sc0004341.1_g000006
rosa_roxburghii	Rroxscaffold_5G00368800
rosa_rugosa	Rorug04G0215200
rosa_samantha	Rh4AG270200 Rh4BG276500 Rh4CG291300 Rh4DG273800
rosa_wichuraiana	Rw4G023450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	253, 880
AccB1I	GGYRCC	1 cut(s)	403
AccI	GTMKAC	1 cut(s)	260
AccII	CGCG	3 cut(s)	112, 303, 323
AciI	CCGC	4 cut(s)	112, 303, 510, 599
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	2 cut(s)	890, 1440
AcuI	CTGAAG	2 cut(s)	170, 1199
AcyI	GRCGYC	1 cut(s)	404
AfaI	GTAC	1 cut(s)	131
AfeI	AGCGCT	1 cut(s)	1176
AgsI	TTSAA	5 cut(s)	163, 521, 527, 778, 787
AhdI	GACNNNNNGTC	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	693
AloI	GAACNNNNNNTCC	2 cut(s)	275, 307
AluBI	AGCT	9 cut(s)	498, 690, 757, 773, 935, 1025, 1106, 1130, 1303
AluI	AGCT	9 cut(s)	498, 690, 757, 773, 935, 1025, 1106, 1130, 1303
Alw21I	GWGCWC	3 cut(s)	598, 1027, 1108
Alw26I	GTCTC	4 cut(s)	136, 239, 374, 579
Ama87I	CYCGRG	1 cut(s)	80
Aor51HI	AGCGCT	1 cut(s)	1176
AoxI	GGCC	3 cut(s)	234, 313, 1418
ApeKI	GCWGC	4 cut(s)	154, 364, 770, 1148
ApoI	RAATTY	2 cut(s)	890, 1440
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
Asp700I	GAANNNNTTC	1 cut(s)	732
AspLEI	GCGC	5 cut(s)	112, 303, 325, 406, 1177
AspS9I	GGNCC	4 cut(s)	98, 924, 1343, 1418
AsuHPI	GGTGA	4 cut(s)	45, 217, 217, 737
AsuII	TTCGAA	1 cut(s)	137
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	3 cut(s)	98, 924, 1343
AxyI	CCTNAGG	1 cut(s)	1422
BalI	TGGCCA	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	403
BanII	GRGCYC	2 cut(s)	1027, 1108
Bbv12I	GWGCWC	3 cut(s)	598, 1027, 1108
BbvI	GCAGC	4 cut(s)	166, 376, 782, 1135
BccI	CCATC	2 cut(s)	382, 1085
BceAI	ACGGC	2 cut(s)	415, 641
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	1 cut(s)	695
BciVI	GTATCC	1 cut(s)	481
BcoDI	GTCTC	4 cut(s)	136, 239, 374, 579
BfaI	CTAG	2 cut(s)	758, 1259
BfmI	CTRYAG	1 cut(s)	768
BfoI	RGCGCY	2 cut(s)	407, 1178
BfuI	GTATCC	1 cut(s)	481
BglII	AGATCT	2 cut(s)	1213, 1261
BisI	GCNGC	4 cut(s)	155, 365, 771, 1149
BlsI	GCNGC	4 cut(s)	156, 366, 772, 1150
Bme1390I	CCNGG	1 cut(s)	695
Bme18I	GGWCC	3 cut(s)	98, 924, 1343
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	4 cut(s)	98, 924, 1343, 1418
BmiI	GGNNCC	3 cut(s)	100, 405, 429
BmrFI	CCNGG	1 cut(s)	695
BmsI	GCATC	3 cut(s)	927, 998, 1362
BoxI	GACNNNNGTC	1 cut(s)	82
BpmI	CTGGAG	3 cut(s)	170, 641, 957
Bpu10I	CCTNAGC	2 cut(s)	201, 342
Bpu14I	TTCGAA	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	1427
BsaHI	GRCGYC	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	714, 927
Bse1I	ACTGG	2 cut(s)	624, 1363
Bse21I	CCTNAGG	1 cut(s)	1422
BseBI	CCWGG	1 cut(s)	695
BseDI	CCNNGG	2 cut(s)	714, 927
BseGI	GGATG	1 cut(s)	871
BseMII	CTCAG	4 cut(s)	215, 356, 1279, 1413
BseNI	ACTGG	2 cut(s)	624, 1363
BseXI	GCAGC	4 cut(s)	166, 376, 782, 1135
Bsh1236I	CGCG	3 cut(s)	112, 303, 323
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	236, 315, 1420
BshNI	GGYRCC	1 cut(s)	403
BsiEI	CGRYCG	1 cut(s)	219
BsiHKAI	GWGCWC	3 cut(s)	598, 1027, 1108
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	174, 281
BslFI	GGGAC	1 cut(s)	551
BsmAI	GTCTC	4 cut(s)	136, 239, 374, 579
BsmBI	CGTCTC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	551
BsmI	GAATGC	1 cut(s)	1323
BsnI	GGCC	3 cut(s)	236, 315, 1420
BsoBI	CYCGRG	1 cut(s)	80
Bsp119I	TTCGAA	1 cut(s)	137
Bsp1286I	GDGCHC	3 cut(s)	598, 1027, 1108
Bsp143I	GATC	5 cut(s)	90, 120, 189, 1213, 1261
Bsp19I	CCATGG	1 cut(s)	927
BspACI	CCGC	4 cut(s)	112, 303, 510, 599
BspANI	GGCC	3 cut(s)	236, 315, 1420
BspCNI	CTCAG	4 cut(s)	214, 355, 1278, 1414
BspFNI	CGCG	3 cut(s)	112, 303, 323
BspHI	TCATGA	2 cut(s)	442, 1467
BspLI	GGNNCC	3 cut(s)	100, 405, 429
BspMAI	CTGCAG	1 cut(s)	772
BspQI	GCTCTTC	1 cut(s)	1113
BspT104I	TTCGAA	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	403
BsrI	ACTGG	2 cut(s)	624, 1363
BssECI	CCNNGG	2 cut(s)	714, 927
BssMI	GATC	5 cut(s)	90, 120, 189, 1213, 1261
BssNI	GRCGYC	1 cut(s)	404
BssT1I	CCWWGG	2 cut(s)	714, 927
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	3 cut(s)	19, 898, 970
Bst6I	CTCTTC	6 cut(s)	134, 302, 522, 618, 1032, 1113
BstACI	GRCGYC	1 cut(s)	404
BstBI	TTCGAA	1 cut(s)	137
BstC8I	GCNNGC	3 cut(s)	6, 949, 1377
BstDEI	CTNAG	4 cut(s)	201, 342, 1265, 1422
BstDSI	CCRYGG	1 cut(s)	927
BstF5I	GGATG	1 cut(s)	871
BstFNI	CGCG	3 cut(s)	112, 303, 323
BstH2I	RGCGCY	2 cut(s)	407, 1178
BstHHI	GCGC	5 cut(s)	112, 303, 325, 406, 1177
BstKTI	GATC	5 cut(s)	93, 123, 192, 1216, 1264
BstMAI	GTCTC	4 cut(s)	136, 239, 374, 579
BstMBI	GATC	5 cut(s)	90, 120, 189, 1213, 1261
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	7 cut(s)	154, 163, 286, 347, 436, 495, 662
BstNI	CCWGG	1 cut(s)	695
BstNSI	RCATGY	1 cut(s)	289
BstPAI	GACNNNNGTC	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	693
BstSFI	CTRYAG	1 cut(s)	768
BstUI	CGCG	3 cut(s)	112, 303, 323
BstV1I	GCAGC	4 cut(s)	166, 376, 782, 1135
BstX2I	RGATCY	2 cut(s)	1213, 1261
BstYI	RGATCY	2 cut(s)	1213, 1261
Bsu36I	CCTNAGG	1 cut(s)	1422
BsuI	GTATCC	1 cut(s)	481
BsuRI	GGCC	3 cut(s)	236, 315, 1420
BtgI	CCRYGG	1 cut(s)	927
BtsCI	GGATG	1 cut(s)	871
BtsI	GCAGTG	2 cut(s)	765, 812
BtsIMutI	CAGTG	4 cut(s)	617, 765, 812, 903
Cac8I	GCNNGC	3 cut(s)	6, 949, 1377
CciI	TCATGA	2 cut(s)	442, 1467
CfoI	GCGC	5 cut(s)	112, 303, 325, 406, 1177
Cfr13I	GGNCC	4 cut(s)	98, 924, 1343, 1418
CseI	GACGC	5 cut(s)	356, 870, 924, 1299, 1453
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	6 cut(s)	249, 286, 337, 443, 928, 1468
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	4 cut(s)	201, 342, 1265, 1422
DinI	GGCGCC	1 cut(s)	405
DpnI	GATC	5 cut(s)	92, 122, 191, 1215, 1263
DpnII	GATC	5 cut(s)	90, 120, 189, 1213, 1261
DrdI	GACNNNNNNGTC	2 cut(s)	253, 880
DriI	GACNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	2 cut(s)	253, 880
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	6 cut(s)	134, 302, 522, 618, 1032, 1113
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	6 cut(s)	134, 302, 522, 618, 1032, 1113
Ecl136II	GAGCTC	2 cut(s)	1025, 1106
Eco130I	CCWWGG	2 cut(s)	714, 927
Eco24I	GRGCYC	2 cut(s)	1027, 1108
Eco32I	GATATC	1 cut(s)	68
Eco47I	GGWCC	3 cut(s)	98, 924, 1343
Eco47III	AGCGCT	1 cut(s)	1176
Eco53kI	GAGCTC	2 cut(s)	1025, 1106
Eco57I	CTGAAG	2 cut(s)	170, 1199
Eco81I	CCTNAGG	1 cut(s)	1422
Eco88I	CYCGRG	1 cut(s)	80
EcoICRI	GAGCTC	2 cut(s)	1025, 1106
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	693
EcoRV	GATATC	1 cut(s)	68
EcoT14I	CCWWGG	2 cut(s)	714, 927
EcoT22I	ATGCAT	2 cut(s)	991, 1323
EcoT38I	GRGCYC	2 cut(s)	1027, 1108
EgeI	GGCGCC	1 cut(s)	405
EheI	GGCGCC	1 cut(s)	405
ErhI	CCWWGG	2 cut(s)	714, 927
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	6 cut(s)	252, 289, 340, 446, 931, 1471
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	1 cut(s)	551
FatI	CATG	6 cut(s)	248, 285, 336, 442, 927, 1467
FauI	CCCGC	1 cut(s)	296
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	4 cut(s)	155, 365, 771, 1149
FokI	GGATG	1 cut(s)	878
FriOI	GRGCYC	2 cut(s)	1027, 1108
Fsp4HI	GCNGC	4 cut(s)	155, 365, 771, 1149
FspBI	CTAG	2 cut(s)	758, 1259
GlaI	GCGC	5 cut(s)	111, 302, 324, 405, 1176
GluI	GCNGC	4 cut(s)	155, 365, 771, 1149
GsuI	CTGGAG	3 cut(s)	170, 641, 957
HaeII	RGCGCY	2 cut(s)	407, 1178
HaeIII	GGCC	3 cut(s)	236, 315, 1420
HapII	CCGG	2 cut(s)	174, 281
HgaI	GACGC	5 cut(s)	356, 870, 924, 1299, 1453
HhaI	GCGC	5 cut(s)	112, 303, 325, 406, 1177
Hin1I	GRCGYC	1 cut(s)	404
Hin1II	CATG	6 cut(s)	252, 289, 340, 446, 931, 1471
Hin6I	GCGC	5 cut(s)	110, 301, 323, 404, 1175
HinP1I	GCGC	5 cut(s)	110, 301, 323, 404, 1175
HincII	GTYRAC	2 cut(s)	22, 261
HindII	GTYRAC	2 cut(s)	22, 261
HindIII	AAGCTT	1 cut(s)	496
HinfI	GANTC	7 cut(s)	83, 134, 168, 177, 267, 904, 1295
HpaII	CCGG	2 cut(s)	174, 281
HphI	GGTGA	4 cut(s)	45, 217, 217, 737
Hpy166II	GTNNAC	4 cut(s)	22, 261, 711, 728
Hpy188I	TCNGA	9 cut(s)	72, 95, 125, 475, 505, 579, 994, 1113, 1284
Hpy8I	GTNNAC	4 cut(s)	22, 261, 711, 728
Hpy99I	CGWCG	5 cut(s)	262, 275, 323, 418, 1315
HpyAV	CCTTC	3 cut(s)	1174, 1180, 1329
HpyCH4III	ACNGT	3 cut(s)	19, 898, 970
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	9 cut(s)	770, 947, 989, 1010, 1048, 1055, 1076, 1321, 1379
HpyF10VI	GCNNNNNNNGC	7 cut(s)	154, 163, 286, 347, 436, 495, 662
HpyF3I	CTNAG	4 cut(s)	201, 342, 1265, 1422
HpySE526I	ACGT	1 cut(s)	416
Hsp92I	GRCGYC	1 cut(s)	404
Hsp92II	CATG	6 cut(s)	252, 289, 340, 446, 931, 1471
HspAI	GCGC	5 cut(s)	110, 301, 323, 404, 1175
KasI	GGCGCC	1 cut(s)	403
Kzo9I	GATC	5 cut(s)	90, 120, 189, 1213, 1261
LguI	GCTCTTC	1 cut(s)	1113
LmnI	GCTCC	5 cut(s)	427, 601, 754, 1022, 1030
Lsp1109I	GCAGC	4 cut(s)	166, 376, 782, 1135
LweI	GCATC	3 cut(s)	927, 998, 1362
MaeI	CTAG	2 cut(s)	758, 1259
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	5 cut(s)	92, 122, 191, 1215, 1263
MboI	GATC	5 cut(s)	90, 120, 189, 1213, 1261
MfeI	CAATTG	1 cut(s)	1455
MflI	RGATCY	2 cut(s)	1213, 1261
MhlI	GDGCHC	3 cut(s)	598, 1027, 1108
MlsI	TGGCCA	1 cut(s)	236
MluNI	TGGCCA	1 cut(s)	236
Mly113I	GGCGCC	1 cut(s)	404
MlyI	GAGTC	3 cut(s)	92, 177, 261
MmeI	TCCRAC	3 cut(s)	587, 863, 952
Mox20I	TGGCCA	1 cut(s)	236
Mph1103I	ATGCAT	2 cut(s)	991, 1323
MroXI	GAANNNNTTC	1 cut(s)	732
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	4 cut(s)	720, 833, 887, 1158
MslI	CAYNNNNRTG	1 cut(s)	1326
Msp20I	TGGCCA	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	601
MspI	CCGG	2 cut(s)	174, 281
MspR9I	CCNGG	1 cut(s)	695
MunI	CAATTG	1 cut(s)	1455
Mva1269I	GAATGC	1 cut(s)	1323
MvaI	CCWGG	1 cut(s)	695
MvnI	CGCG	3 cut(s)	112, 303, 323
MwoI	GCNNNNNNNGC	7 cut(s)	154, 163, 286, 347, 436, 495, 662
NarI	GGCGCC	1 cut(s)	404
NcoI	CCATGG	1 cut(s)	927
NdeII	GATC	5 cut(s)	90, 120, 189, 1213, 1261
NlaIII	CATG	6 cut(s)	252, 289, 340, 446, 931, 1471
NlaIV	GGNNCC	3 cut(s)	100, 405, 429
NmeAIII	GCCGAG	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	205
NsiI	ATGCAT	2 cut(s)	991, 1323
NspI	RCATGY	1 cut(s)	289
NspV	TTCGAA	1 cut(s)	137
PagI	TCATGA	2 cut(s)	442, 1467
PciSI	GCTCTTC	1 cut(s)	1113
PcsI	WCGNNNNNNNCGW	3 cut(s)	99, 177, 354
PctI	GAATGC	1 cut(s)	1323
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	4 cut(s)	134, 177, 904, 1295
PflFI	GACNNNGTC	2 cut(s)	356, 542
PfoI	TCCNGGA	1 cut(s)	693
PkrI	GCNGC	4 cut(s)	156, 366, 772, 1150
PleI	GAGTC	3 cut(s)	91, 176, 261
PluTI	GGCGCC	1 cut(s)	407
PpsI	GAGTC	3 cut(s)	91, 176, 261
PpuMI	RGGWCCY	1 cut(s)	98
PshAI	GACNNNNGTC	1 cut(s)	82
Psp124BI	GAGCTC	2 cut(s)	1027, 1108
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	693
PspN4I	GGNNCC	3 cut(s)	100, 405, 429
PspPI	GGNCC	4 cut(s)	98, 924, 1343, 1418
PspPPI	RGGWCCY	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	772
PsuI	RGATCY	2 cut(s)	1213, 1261
PsyI	GACNNNGTC	2 cut(s)	356, 542
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	1326
SacI	GAGCTC	2 cut(s)	1027, 1108
SalI	GTCGAC	1 cut(s)	259
SapI	GCTCTTC	1 cut(s)	1113
SaqAI	TTAA	4 cut(s)	720, 833, 887, 1158
SatI	GCNGC	4 cut(s)	155, 365, 771, 1149
Sau3AI	GATC	5 cut(s)	90, 120, 189, 1213, 1261
Sau96I	GGNCC	4 cut(s)	98, 924, 1343, 1418
SchI	GAGTC	3 cut(s)	92, 177, 261
ScrFI	CCNGG	1 cut(s)	695
SduI	GDGCHC	3 cut(s)	598, 1027, 1108
SfaNI	GCATC	3 cut(s)	927, 998, 1362
SfcI	CTRYAG	1 cut(s)	768
SfoI	GGCGCC	1 cut(s)	405
SfuI	TTCGAA	1 cut(s)	137
SinI	GGWCC	3 cut(s)	98, 924, 1343
SmiMI	CAYNNNNRTG	1 cut(s)	1326
SmlI	CTYRAG	1 cut(s)	1406
SmoI	CTYRAG	1 cut(s)	1406
SsiI	CCGC	4 cut(s)	112, 303, 510, 599
SspDI	GGCGCC	1 cut(s)	403
SspMI	CTAG	2 cut(s)	758, 1259
SstI	GAGCTC	2 cut(s)	1027, 1108
StyD4I	CCNGG	1 cut(s)	693
StyI	CCWWGG	2 cut(s)	714, 927
TaaI	ACNGT	3 cut(s)	19, 898, 970
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	6 cut(s)	43, 137, 180, 260, 464, 1313
TaqII	GACCGA	1 cut(s)	233
TfiI	GAWTC	4 cut(s)	134, 177, 904, 1295
Tru1I	TTAA	4 cut(s)	720, 833, 887, 1158
Tru9I	TTAA	4 cut(s)	720, 833, 887, 1158
TscAI	CASTG	4 cut(s)	624, 772, 819, 903
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	4 cut(s)	154, 364, 770, 1148
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	8 cut(s)	39, 637, 716, 845, 882, 1047, 1220, 1404
TspGWI	ACGGA	2 cut(s)	76, 224
TspRI	CASTG	4 cut(s)	624, 772, 819, 903
Tth111I	GACNNNGTC	2 cut(s)	356, 542
VpaK11BI	GGWCC	3 cut(s)	98, 924, 1343
XapI	RAATTY	2 cut(s)	890, 1440
XceI	RCATGY	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	2 cut(s)	758, 1259
Zsp2I	ATGCAT	2 cut(s)	991, 1323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.