Prupe.1G119100_v2.0.a1

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015682
Physical Location & Seq
Forward (+)
9323354 .. 9325141
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G119100.1

Sequence Viewer

Length: 1788 bp
ATGTTTTCTTTCGGGGAGTTCAATTTCTGTCGAGTTCAGGATAAACTTAGCTCCACTGATAAAGGTTCTCATATTATAATGGAAGAGGTGAAAAAAATTGGGAAACAAGTTCATTCTTATGAAGCTGACAATTGGGGGGACTCAGGCGGATTTGGTTCCCTTGGTTCTGATTATGGATTTTATGGCAATAATCACTACTCCTCTGGGCTCCTTTTCCCCAAGTTTCAACAACAAGAAGAGCAGCAACCATTGGTTTCAGACTATGGATTATTTGATGCCATGCAGTTTGATGCTCTCTTTCCACCATTTCAAGCATGCTTAGAGGAGATTGGAAAGCTTGAAGATATCCCAACTTTGGTTCCACATGTTGAACCCAAGAAAGGGAAGCGAGATTTCTCCTCCTTAGCAGGGCTTGATCTCTTGAACAACTACGGCAGCGGGTTTAAACGGTTGAATGGGGAAAGGATTTTTGAGTCTAGCAATTACACAGCATGCACAGATCAGGTGGCAGGCAGGAAGTTATCAACTGAAGAAATCATGAGGGTGGCAGGAGCAAGGTTCATTCGTACTTCTTCCCAAGCGTCTGGTGTTGCTTCCATGCTTAGCCATCCTTATGAATTCTCCTTTTCTGGCCTTTCAGTTGAGGAGACTAGAGATGTAGAGCTTGTTGAGTTCCTTCTTGCTTCTGCTGAGAAAGTAGGATATCAGCAGTATGAGCGTGCAGGCAAATTGCTTAATCGATGTGATTTGTTGTCTTCCAGTACCGGGAATTCAGTTGAACGAGTAGTTTACTATTTTTCTGAAGCTCTTCGAGAGAAGATTGATCGCGAAACTGGAAGAGTCACACCAAAGGGTTTGGGGAACAAGCCTTCATTTGATGTTAATGAGGCAATGAAGAGACCAAATGAGACCTCCCTTGCATGTCAAATCAAGATTCCTTTCGGCCAAGTTGCACAATTTGCTGGAATTCAAGCCATTGTGGAAAATGTGGCTGAGGCTAAGAAGGTACATGTAATTGATCTGGAAATCAGGAATGGGGTGCAATGGACAGGTCTGATGCAAGCCTTAGCATCTCGTTCTGATTGTCCAGTTGAGCTTCTCAAGATAAGTGCTATAGGAACGAGTTCCAGAAAATTAATTGAGGAAACAGGTAAGAGGTTGGAGAGTTTTGCCGAAAGCATGAACTTACCCTTTTCTTTCAAGTTAGTGATGGTACCAGACATGCTAGATCTCAAAGAAGATATGTTTGAGCTAGATTCTGAAGAAACAGTTGCTGTCTATTCTGAGTTCGCAATGAGGAGCATGGTTGCACAGCCAGATCGACTGGAATCTGCAATGAGAGTAATCAAAAACATCCGTCCATGTGTAACAGTGGTCACTGAAGTTGAGGGAAATCACAACTCTCCAGTCTTTGTGACCCGTTTTATTGAGGCCCTTTTCTTCTTTGGTGCATACTTCGACTGCGTGGAAACTTGTATGGAACGAAATGATCCAAACAGAATGATTTTAGAATCACTGTACTTTGGGAATGGAATTAGAAACATTGTGGCAGCTGAAGGAGAGGAAAGGAAGATTCGAAATGTGAAGATTGACGTTTGGAGGGCATTTTTTGCACGGTATGGAATGGAGGAAATAGATTTGAGCTCATCATCCTTGTATCAAGTAGAGCTGGTGCTTAAGAATTTTTCTTGTGGGAGTTCTTGCACAGTCAATATGGATGGGAAATGCCTTCTTGTTGGATGGAAGGGCACACCTCTCCAGTCTCTTTCTCTTTGGAAATTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
GRAS

Protein Analysis

596

Amino Acids

66.74

Weight (kDa)

5.19

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015682)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06470
malus_domestica MD13G1155800.v1.1
prunus_persica Prupe.1G119100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0334761
rosa_laevigata RLG00000029424
rosa_multiflora Rmu_sc0000574.1_g000026 Rmu_sc0006031.1_g000012 Rmu_sc0015370.1_g000001
rosa_roxburghii Rroxscaffold_4G00316610
rosa_rugosa Rorug01G0115700
rosa_samantha Rh1AG140700 Rh1BG107900 Rh1CG132600 Rh1DG144700
rosa_wichuraiana Rw1G010820 Rw1G011610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 77
Acc65I GGTACC 1 cut(s) 1213
AccB1I GGYRCC 1 cut(s) 1213
AccII CGCG 1 cut(s) 828
AciI CCGC 2 cut(s) 147, 438
AclWI GGATC 1 cut(s) 1484
AcoI YGGCCR 1 cut(s) 943
AcsI RAATTY 5 cut(s) 617, 769, 966, 1681, 1778
AcuI CTGAAG 5 cut(s) 549, 822, 1281, 1401, 1575
AfaI GTAC 5 cut(s) 568, 763, 1008, 1215, 1520
AfiI CCNNNNNNNGG 5 cut(s) 355, 380, 381, 408, 765
AflII CTTAAG 1 cut(s) 1676
AflIII ACRYGT 2 cut(s) 364, 1009
Alw21I GWGCWC 1 cut(s) 1646
Alw26I GTCTC 4 cut(s) 641, 892, 902, 1767
AlwI GGATC 1 cut(s) 1484
AlwNI CAGNNNCTG 1 cut(s) 1274
AoxI GGCC 3 cut(s) 631, 943, 1431
ApeKI GCWGC 3 cut(s) 241, 435, 1550
ApoI RAATTY 5 cut(s) 617, 769, 966, 1681, 1778
AseI ATTAAT 1 cut(s) 1136
Asp700I GAANNNNTTC 2 cut(s) 807, 1123
Asp718I GGTACC 1 cut(s) 1213
AspS9I GGNCC 1 cut(s) 1432
AsuC2I CCSGG 1 cut(s) 766
AsuHPI GGTGA 1 cut(s) 100
AsuII TTCGAA 1 cut(s) 1576
BaeGI GKGCMC 1 cut(s) 1751
BanI GGYRCC 1 cut(s) 1213
BanII GRGCYC 2 cut(s) 210, 1646
BbsI GAAGAC 1 cut(s) 747
Bbv12I GWGCWC 1 cut(s) 1646
BbvCI CCTCAGC 1 cut(s) 993
BbvI GCAGC 3 cut(s) 253, 447, 1562
BccI CCATC 4 cut(s) 615, 1204, 1712, 1734
BceAI ACGGC 1 cut(s) 448
BcnI CCSGG 1 cut(s) 766
BcoDI GTCTC 4 cut(s) 641, 892, 902, 1767
BfaI CTAG 4 cut(s) 477, 651, 1226, 1253
BfmI CTRYAG 1 cut(s) 1113
BfrI CTTAAG 1 cut(s) 1676
BglII AGATCT 1 cut(s) 1228
BisI GCNGC 3 cut(s) 242, 436, 1551
BlpI GCTNAGC 1 cut(s) 602
BlsI GCNGC 3 cut(s) 243, 437, 1552
Bme1390I CCNGG 1 cut(s) 766
BmgT120I GGNCC 1 cut(s) 1432
BmiI GGNNCC 4 cut(s) 157, 209, 360, 1215
BmrFI CCNGG 1 cut(s) 766
BmsI GCATC 4 cut(s) 265, 280, 1047, 1079
BpiI GAAGAC 1 cut(s) 747
BpmI CTGGAG 2 cut(s) 1389, 1742
Bpu10I CCTNAGC 3 cut(s) 403, 993, 1066
Bpu1102I GCTNAGC 1 cut(s) 602
Bpu14I TTCGAA 1 cut(s) 1576
BpuEI CTTGAG 1 cut(s) 1085
BpuMI CCSGG 1 cut(s) 766
Bsa29I ATCGAT 1 cut(s) 739
BsaI GGTCTC 2 cut(s) 892, 902
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 5 cut(s) 355, 380, 381, 408, 765
Bse1I ACTGG 6 cut(s) 759, 838, 1088, 1329, 1406, 1759
Bse3DI GCAATG 4 cut(s) 897, 1049, 1299, 1341
BseCI ATCGAT 1 cut(s) 739
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 5 cut(s) 607, 1353, 1649, 1723, 1745
BseLI CCNNNNNNNGG 5 cut(s) 355, 380, 381, 408, 765
BseMI GCAATG 4 cut(s) 897, 1049, 1299, 1341
BseMII CTCAG 4 cut(s) 156, 681, 984, 1275
BseNI ACTGG 6 cut(s) 759, 838, 1088, 1329, 1406, 1759
BseRI GAGGAG 5 cut(s) 190, 338, 388, 659, 1312
BseSI GKGCMC 1 cut(s) 1751
BseXI GCAGC 3 cut(s) 253, 447, 1562
BsgI GTGCAG 1 cut(s) 741
Bsh1236I CGCG 1 cut(s) 828
BshFI GGCC 3 cut(s) 633, 945, 1433
BshNI GGYRCC 1 cut(s) 1213
BshVI ATCGAT 1 cut(s) 739
BsiHKAI GWGCWC 1 cut(s) 1646
BsiSI CCGG 1 cut(s) 765
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 5 cut(s) 355, 380, 381, 408, 765
BsmAI GTCTC 4 cut(s) 641, 892, 902, 1767
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 3 cut(s) 633, 945, 1433
Bso31I GGTCTC 2 cut(s) 892, 902
Bsp119I TTCGAA 1 cut(s) 1576
Bsp1286I GDGCHC 3 cut(s) 210, 1646, 1751
Bsp143I GATC 7 cut(s) 415, 499, 823, 1018, 1228, 1318, 1489
Bsp1720I GCTNAGC 1 cut(s) 602
Bsp68I TCGCGA 1 cut(s) 828
BspACI CCGC 2 cut(s) 147, 438
BspANI GGCC 3 cut(s) 633, 945, 1433
BspCNI CTCAG 4 cut(s) 155, 682, 985, 1276
BspDI ATCGAT 1 cut(s) 739
BspFNI CGCG 1 cut(s) 828
BspHI TCATGA 1 cut(s) 537
BspLI GGNNCC 4 cut(s) 157, 209, 360, 1215
BspPI GGATC 1 cut(s) 1484
BspQI GCTCTTC 2 cut(s) 231, 813
BspT104I TTCGAA 1 cut(s) 1576
BspT107I GGYRCC 1 cut(s) 1213
BspTI CTTAAG 1 cut(s) 1676
BspTNI GGTCTC 2 cut(s) 892, 902
BsrDI GCAATG 4 cut(s) 897, 1049, 1299, 1341
BsrI ACTGG 6 cut(s) 759, 838, 1088, 1329, 1406, 1759
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 7 cut(s) 415, 499, 823, 1018, 1228, 1318, 1489
BssT1I CCWWGG 1 cut(s) 160
Bst4CI ACNGT 6 cut(s) 450, 1270, 1372, 1518, 1617, 1708
Bst6I CTCTTC 5 cut(s) 78, 231, 813, 832, 890
BstAFI CTTAAG 1 cut(s) 1676
BstAPI GCANNNNNTGC 2 cut(s) 959, 1610
BstBI TTCGAA 1 cut(s) 1576
BstC8I GCNNGC 6 cut(s) 316, 493, 511, 720, 724, 1062
BstF5I GGATG 5 cut(s) 607, 1353, 1649, 1723, 1745
BstFNI CGCG 1 cut(s) 828
BstKTI GATC 7 cut(s) 418, 502, 826, 1021, 1231, 1321, 1492
BstMAI GTCTC 4 cut(s) 641, 892, 902, 1767
BstMBI GATC 7 cut(s) 415, 499, 823, 1018, 1228, 1318, 1489
BstMWI GCNNNNNNNGC 3 cut(s) 715, 959, 1610
BstNSI RCATGY 6 cut(s) 318, 368, 495, 924, 1013, 1225
BstSCI CCNGG 1 cut(s) 764
BstSFI CTRYAG 1 cut(s) 1113
BstSLI GKGCMC 1 cut(s) 1751
BstUI CGCG 1 cut(s) 828
BstV1I GCAGC 3 cut(s) 253, 447, 1562
BstV2I GAAGAC 1 cut(s) 747
BstX2I RGATCY 1 cut(s) 1228
BstXI CCANNNNNNTGG 1 cut(s) 584
BstYI RGATCY 1 cut(s) 1228
Bsu15I ATCGAT 1 cut(s) 739
BsuRI GGCC 3 cut(s) 633, 945, 1433
BsuTUI ATCGAT 1 cut(s) 739
BtsCI GGATG 5 cut(s) 607, 1353, 1649, 1723, 1745
BtsIMutI CAGTG 4 cut(s) 54, 1377, 1377, 1514
BtuMI TCGCGA 1 cut(s) 828
Cac8I GCNNGC 6 cut(s) 316, 493, 511, 720, 724, 1062
CaiI CAGNNNCTG 1 cut(s) 1274
CciI TCATGA 1 cut(s) 537
Cfr13I GGNCC 1 cut(s) 1432
ClaI ATCGAT 1 cut(s) 739
CseI GACGC 1 cut(s) 570
Csp6I GTAC 5 cut(s) 567, 762, 1007, 1214, 1519
CviQI GTAC 5 cut(s) 567, 762, 1007, 1214, 1519
DpnI GATC 7 cut(s) 417, 501, 825, 1020, 1230, 1320, 1491
DpnII GATC 7 cut(s) 415, 499, 823, 1018, 1228, 1318, 1489
DraI TTTAAA 1 cut(s) 445
EaeI YGGCCR 1 cut(s) 943
Eam1104I CTCTTC 5 cut(s) 78, 231, 813, 832, 890
EarI CTCTTC 5 cut(s) 78, 231, 813, 832, 890
EciI GGCGGA 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 1644
Eco130I CCWWGG 1 cut(s) 160
Eco24I GRGCYC 2 cut(s) 210, 1646
Eco31I GGTCTC 2 cut(s) 892, 902
Eco32I GATATC 2 cut(s) 346, 704
Eco53kI GAGCTC 1 cut(s) 1644
Eco57I CTGAAG 5 cut(s) 549, 822, 1281, 1401, 1575
EcoICRI GAGCTC 1 cut(s) 1644
EcoO109I RGGNCCY 1 cut(s) 1432
EcoRI GAATTC 3 cut(s) 617, 769, 966
EcoRV GATATC 2 cut(s) 346, 704
EcoT14I CCWWGG 1 cut(s) 160
EcoT38I GRGCYC 2 cut(s) 210, 1646
ErhI CCWWGG 1 cut(s) 160
FaqI GGGAC 1 cut(s) 152
FauI CCCGC 1 cut(s) 431
Fnu4HI GCNGC 3 cut(s) 242, 436, 1551
FokI GGATG 5 cut(s) 594, 1340, 1636, 1730, 1752
FriOI GRGCYC 2 cut(s) 210, 1646
Fsp4HI GCNGC 3 cut(s) 242, 436, 1551
FspBI CTAG 4 cut(s) 477, 651, 1226, 1253
GluI GCNGC 3 cut(s) 242, 436, 1551
GsuI CTGGAG 2 cut(s) 1389, 1742
HaeIII GGCC 3 cut(s) 633, 945, 1433
HapII CCGG 1 cut(s) 765
HgaI GACGC 1 cut(s) 570
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 8 cut(s) 140, 473, 840, 934, 1256, 1328, 1511, 1573
HpaII CCGG 1 cut(s) 765
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 790
Hpy188I TCNGA 7 cut(s) 169, 259, 802, 1056, 1081, 1261, 1285
Hpy8I GTNNAC 1 cut(s) 790
HpyAV CCTTC 6 cut(s) 686, 879, 997, 1550, 1738, 1739
HpyCH4III ACNGT 6 cut(s) 450, 1270, 1372, 1518, 1617, 1708
HpyCH4IV ACGT 1 cut(s) 1593
HpyF10VI GCNNNNNNNGC 3 cut(s) 715, 959, 1610
HpySE526I ACGT 1 cut(s) 1593
KpnI GGTACC 1 cut(s) 1217
Kzo9I GATC 7 cut(s) 415, 499, 823, 1018, 1228, 1318, 1489
LguI GCTCTTC 2 cut(s) 231, 813
LmnI GCTCC 4 cut(s) 56, 213, 551, 1299
Lsp1109I GCAGC 3 cut(s) 253, 447, 1562
LweI GCATC 4 cut(s) 265, 280, 1047, 1079
MaeI CTAG 4 cut(s) 477, 651, 1226, 1253
MaeII ACGT 1 cut(s) 1593
MaeIII GTNAC 4 cut(s) 841, 1366, 1375, 1414
MalI GATC 7 cut(s) 417, 501, 825, 1020, 1230, 1320, 1491
MboI GATC 7 cut(s) 415, 499, 823, 1018, 1228, 1318, 1489
MfeI CAATTG 1 cut(s) 130
MflI RGATCY 1 cut(s) 1228
MhlI GDGCHC 3 cut(s) 210, 1646, 1751
MlyI GAGTC 3 cut(s) 134, 482, 849
MmeI TCCRAC 2 cut(s) 1140, 1717
MroXI GAANNNNTTC 2 cut(s) 807, 1123
MseI TTAA 5 cut(s) 444, 735, 882, 1136, 1677
MslI CAYNNNNRTG 3 cut(s) 117, 542, 612
MspA1I CMGCKG 2 cut(s) 438, 1553
MspCI CTTAAG 1 cut(s) 1676
MspI CCGG 1 cut(s) 765
MspR9I CCNGG 1 cut(s) 766
MssI GTTTAAAC 1 cut(s) 445
MunI CAATTG 1 cut(s) 130
MvnI CGCG 1 cut(s) 828
MwoI GCNNNNNNNGC 3 cut(s) 715, 959, 1610
NciI CCSGG 1 cut(s) 766
NdeII GATC 7 cut(s) 415, 499, 823, 1018, 1228, 1318, 1489
NlaIV GGNNCC 4 cut(s) 157, 209, 360, 1215
NmuCI GTSAC 3 cut(s) 841, 1375, 1414
NruI TCGCGA 1 cut(s) 828
NspI RCATGY 6 cut(s) 318, 368, 495, 924, 1013, 1225
NspV TTCGAA 1 cut(s) 1576
PaeI GCATGC 2 cut(s) 318, 495
PagI TCATGA 1 cut(s) 537
PciI ACATGT 2 cut(s) 364, 1009
PciSI GCTCTTC 2 cut(s) 231, 813
PdmI GAANNNNTTC 2 cut(s) 807, 1123
PfeI GAWTC 5 cut(s) 934, 1256, 1328, 1511, 1573
PkrI GCNGC 3 cut(s) 243, 437, 1552
PleI GAGTC 3 cut(s) 134, 481, 848
PmeI GTTTAAAC 1 cut(s) 445
PpsI GAGTC 3 cut(s) 134, 481, 848
PscI ACATGT 2 cut(s) 364, 1009
PshBI ATTAAT 1 cut(s) 1136
PsiI TTATAA 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 1646
PspN4I GGNNCC 4 cut(s) 157, 209, 360, 1215
PspPI GGNCC 1 cut(s) 1432
PstNI CAGNNNCTG 1 cut(s) 1274
PsuI RGATCY 1 cut(s) 1228
PvuII CAGCTG 1 cut(s) 1553
RruI TCGCGA 1 cut(s) 828
RsaI GTAC 5 cut(s) 568, 763, 1008, 1215, 1520
RsaNI GTAC 5 cut(s) 567, 762, 1007, 1214, 1519
RseI CAYNNNNRTG 3 cut(s) 117, 542, 612
SacI GAGCTC 1 cut(s) 1646
SapI GCTCTTC 2 cut(s) 231, 813
SaqAI TTAA 5 cut(s) 444, 735, 882, 1136, 1677
SatI GCNGC 3 cut(s) 242, 436, 1551
Sau3AI GATC 7 cut(s) 415, 499, 823, 1018, 1228, 1318, 1489
Sau96I GGNCC 1 cut(s) 1432
SchI GAGTC 3 cut(s) 134, 482, 849
ScrFI CCNGG 1 cut(s) 766
SduI GDGCHC 3 cut(s) 210, 1646, 1751
SfaNI GCATC 4 cut(s) 265, 280, 1047, 1079
SfcI CTRYAG 1 cut(s) 1113
SfuI TTCGAA 1 cut(s) 1576
SmiMI CAYNNNNRTG 3 cut(s) 117, 542, 612
SmlI CTYRAG 2 cut(s) 1100, 1676
SmoI CTYRAG 2 cut(s) 1100, 1676
SphI GCATGC 2 cut(s) 318, 495
SsiI CCGC 2 cut(s) 147, 438
SspMI CTAG 4 cut(s) 477, 651, 1226, 1253
SstI GAGCTC 1 cut(s) 1646
StyD4I CCNGG 1 cut(s) 764
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 6 cut(s) 450, 1270, 1372, 1518, 1617, 1708
TaiI ACGT 1 cut(s) 1596
TaqI TCGA 6 cut(s) 31, 739, 811, 1321, 1458, 1576
TatI WGTACW 1 cut(s) 1518
TfiI GAWTC 5 cut(s) 934, 1256, 1328, 1511, 1573
Tru1I TTAA 5 cut(s) 444, 735, 882, 1136, 1677
Tru9I TTAA 5 cut(s) 444, 735, 882, 1136, 1677
TscAI CASTG 4 cut(s) 61, 1377, 1384, 1521
TseFI GTSAC 3 cut(s) 841, 1375, 1414
TseI GCWGC 3 cut(s) 241, 435, 1550
Tsp45I GTSAC 3 cut(s) 841, 1375, 1414
TspDTI ATGAA 7 cut(s) 101, 135, 550, 630, 861, 908, 1196
TspGWI ACGGA 1 cut(s) 1346
TspRI CASTG 4 cut(s) 61, 1377, 1384, 1521
Vha464I CTTAAG 1 cut(s) 1676
VspI ATTAAT 1 cut(s) 1136
XapI RAATTY 5 cut(s) 617, 769, 966, 1681, 1778
XceI RCATGY 6 cut(s) 318, 368, 495, 924, 1013, 1225
XmnI GAANNNNTTC 2 cut(s) 807, 1123
XspI CTAG 4 cut(s) 477, 651, 1226, 1253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.