Rmu_sc0015370.1_g000001

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015370.1
OG0015682
Physical Location & Seq
Forward (+)
5152 .. 6042
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015370.1_g000001.1.cds

Sequence Viewer

Length: 891 bp
atgatgatcacaaacgaaacctcccttgcatgtcacaacaagatccctttctgccaaattgcacaatttgctggaattcaaggcatagtggaaaaggtggttgaggctaagaaggttcatgtaattgatctggaaatcaggagtggggtgcaatggacagttctgatgcaagccttagcatcccgtgatttcccacttgaacttctcaagataagtgcggtcggaacttctaaagaaacgattcagaatacaggtaagtggttggagagttttgccaaaaccatgaacttacccttttctttcaaaatggtgttggtaccagatatgctagatctcaaagaagacatgtttgagctggattctgaggaaacagttgcagtctacactgagttcgtactgaggtccatggtcccgcagccagatcgcctggagtctttaatgaaagtgataaagaacatccatccatctgtaacagtggtcaccgaagttgaggcgaatcacaactcacctgtatttgtgaccagattcattgaagcccttttcttctttagtgcattctttgattgtgtggaaacttgtattgaacaaaatgagccaattagaaagagtttggagtcgcaatactttggaaatggaattaaaaatattgtggcaactgaaggagaggaaaggaagatacgtaatgtgaagattgatgtttggagggccttttttgctcgctatggaatggaggagatggagttaagctcatcatccttataccaagccgagctggtggctaagaactttccctgtgggaattcttgcaccatcactatggatgggaaaaccctgattgccggatggaaaggaacacctctccaatctctctctctttggaaatttgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
GRAS

Protein Analysis

296

Amino Acids

33.54

Weight (kDa)

5.32

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015682)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06470
malus_domestica MD13G1155800.v1.1
prunus_persica Prupe.1G119100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0334761
rosa_laevigata RLG00000029424
rosa_multiflora Rmu_sc0000574.1_g000026 Rmu_sc0006031.1_g000012 Rmu_sc0015370.1_g000001
rosa_roxburghii Rroxscaffold_4G00316610
rosa_rugosa Rorug01G0115700
rosa_samantha Rh1AG140700 Rh1BG107900 Rh1CG132600 Rh1DG144700
rosa_wichuraiana Rw1G010820 Rw1G011610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 316
AccB1I GGYRCC 1 cut(s) 316
AccI GTMKAC 1 cut(s) 381
AciI CCGC 2 cut(s) 218, 413
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 3 cut(s) 75, 799, 881
AcuI CTGAAG 1 cut(s) 678
AfaI GTAC 2 cut(s) 318, 396
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 5 cut(s) 80, 200, 304, 533, 584
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 3 cut(s) 355, 747, 772
AluI AGCT 3 cut(s) 355, 747, 772
AlwI GGATC 1 cut(s) 37
AoxI GGCC 1 cut(s) 705
ApeKI GCWGC 1 cut(s) 415
ApoI RAATTY 3 cut(s) 75, 799, 881
Asp700I GAANNNNTTC 1 cut(s) 240
Asp718I GGTACC 1 cut(s) 316
AspS9I GGNCC 3 cut(s) 402, 409, 705
AsuHPI GGTGA 2 cut(s) 472, 498
AvaII GGWCC 2 cut(s) 402, 409
BanI GGYRCC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 427
BccI CCATC 6 cut(s) 468, 472, 730, 815, 818, 837
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BciT130I CCWGG 1 cut(s) 428
BclI TGATCA 1 cut(s) 6
BfaI CTAG 1 cut(s) 329
BglII AGATCT 1 cut(s) 331
BisI GCNGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 417
Bme1390I CCNGG 1 cut(s) 428
Bme18I GGWCC 2 cut(s) 402, 409
BmgT120I GGNCC 3 cut(s) 402, 409, 705
BmiI GGNNCC 2 cut(s) 318, 411
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 2 cut(s) 156, 188
BpiI GAAGAC 1 cut(s) 348
BplI GAGNNNNNCTC 2 cut(s) 731, 763
BpmI CTGGAG 1 cut(s) 449
Bpu10I CCTNAGC 1 cut(s) 175
BpuEI CTTGAG 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 680
BsaJI CCNNGG 1 cut(s) 405
BsaXI ACNNNNNCTCC 4 cut(s) 5, 35, 725, 755
Bse3DI GCAATG 1 cut(s) 158
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 1 cut(s) 405
BseGI GGATG 6 cut(s) 179, 456, 460, 752, 826, 848
BseMI GCAATG 1 cut(s) 158
BseMII CTCAG 3 cut(s) 354, 378, 389
BseRI GAGGAG 1 cut(s) 746
BseXI GCAGC 1 cut(s) 427
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 1 cut(s) 707
BshNI GGYRCC 1 cut(s) 316
BsiEI CGRYCG 1 cut(s) 222
BsiSI CCGG 1 cut(s) 840
BslFI GGGAC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 554
BsnI GGCC 1 cut(s) 707
Bsp143I GATC 5 cut(s) 6, 42, 127, 331, 421
Bsp19I CCATGG 1 cut(s) 405
BspACI CCGC 2 cut(s) 218, 413
BspANI GGCC 1 cut(s) 707
BspCNI CTCAG 3 cut(s) 355, 379, 390
BspLI GGNNCC 2 cut(s) 318, 411
BspPI GGATC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 5 cut(s) 6, 42, 127, 331, 421
BssT1I CCWWGG 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 3 cut(s) 160, 373, 475
BstAPI GCANNNNNTGC 1 cut(s) 68
BstBAI YACGTR 1 cut(s) 680
BstC8I GCNNGC 2 cut(s) 171, 718
BstDEI CTNAG 6 cut(s) 108, 175, 363, 387, 398, 780
BstDSI CCRYGG 1 cut(s) 405
BstEII GGTNACC 1 cut(s) 478
BstF5I GGATG 6 cut(s) 179, 456, 460, 752, 826, 848
BstKTI GATC 5 cut(s) 9, 45, 130, 334, 424
BstMBI GATC 5 cut(s) 6, 42, 127, 331, 421
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 2 cut(s) 68, 713
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 2 cut(s) 33, 349
BstPI GGTNACC 1 cut(s) 478
BstSCI CCNGG 1 cut(s) 426
BstSNI TACGTA 1 cut(s) 680
BstV1I GCAGC 1 cut(s) 427
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 2 cut(s) 42, 331
BstXI CCANNNNNNTGG 1 cut(s) 817
BstYI RGATCY 2 cut(s) 42, 331
BsuRI GGCC 1 cut(s) 707
BtgI CCRYGG 1 cut(s) 405
BtsCI GGATG 6 cut(s) 179, 456, 460, 752, 826, 848
BtsIMutI CAGTG 2 cut(s) 384, 480
Cac8I GCNNGC 2 cut(s) 171, 718
Cfr13I GGNCC 3 cut(s) 402, 409, 705
Csp6I GTAC 2 cut(s) 317, 395
CviAII CATG 5 cut(s) 30, 119, 283, 346, 406
CviQI GTAC 2 cut(s) 317, 395
DdeI CTNAG 6 cut(s) 108, 175, 363, 387, 398, 780
DpnI GATC 5 cut(s) 8, 44, 129, 333, 423
DpnII GATC 5 cut(s) 6, 42, 127, 331, 421
Eco105I TACGTA 1 cut(s) 680
Eco130I CCWWGG 1 cut(s) 405
Eco47I GGWCC 2 cut(s) 402, 409
Eco57I CTGAAG 1 cut(s) 678
Eco91I GGTNACC 1 cut(s) 478
EcoO109I RGGNCCY 1 cut(s) 705
EcoO65I GGTNACC 1 cut(s) 478
EcoRI GAATTC 2 cut(s) 75, 799
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 5 cut(s) 33, 122, 286, 349, 409
FaqI GGGAC 1 cut(s) 395
FatI CATG 5 cut(s) 29, 118, 282, 345, 405
FauI CCCGC 1 cut(s) 420
FbaI TGATCA 1 cut(s) 6
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 1 cut(s) 416
FokI GGATG 6 cut(s) 166, 443, 447, 739, 833, 855
Fsp4HI GCNGC 1 cut(s) 416
FspBI CTAG 1 cut(s) 329
GluI GCNGC 1 cut(s) 416
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 1 cut(s) 707
HapII CCGG 1 cut(s) 840
Hin1II CATG 5 cut(s) 33, 122, 286, 349, 409
HinfI GANTC 6 cut(s) 241, 359, 431, 496, 525, 614
HpaII CCGG 1 cut(s) 840
HphI GGTGA 2 cut(s) 472, 498
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 4 cut(s) 165, 224, 246, 364
Hpy188III TCNNGA 3 cut(s) 131, 139, 208
Hpy8I GTNNAC 1 cut(s) 382
HpyAV CCTTC 2 cut(s) 106, 653
HpyCH4III ACNGT 3 cut(s) 160, 373, 475
HpyCH4IV ACGT 1 cut(s) 679
HpyCH4V TGCA 7 cut(s) 29, 62, 151, 169, 377, 554, 807
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 713
HpyF3I CTNAG 6 cut(s) 108, 175, 363, 387, 398, 780
HpySE526I ACGT 1 cut(s) 679
Hsp92II CATG 5 cut(s) 33, 122, 286, 349, 409
KpnI GGTACC 1 cut(s) 320
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 5 cut(s) 6, 42, 127, 331, 421
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 2 cut(s) 156, 188
MaeI CTAG 1 cut(s) 329
MaeII ACGT 1 cut(s) 679
MaeIII GTNAC 4 cut(s) 32, 469, 478, 517
MalI GATC 5 cut(s) 8, 44, 129, 333, 423
MboI GATC 5 cut(s) 6, 42, 127, 331, 421
MboII GAAGA 4 cut(s) 353, 535, 685, 700
MflI RGATCY 2 cut(s) 42, 331
MluCI AATT 8 cut(s) 57, 65, 75, 123, 597, 636, 799, 881
MlyI GAGTC 2 cut(s) 440, 623
MmeI TCCRAC 2 cut(s) 202, 243
MnlI CCTC 9 cut(s) 31, 97, 358, 393, 484, 658, 696, 724, 867
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 3 cut(s) 437, 639, 743
MslI CAYNNNNRTG 1 cut(s) 815
MspI CCGG 1 cut(s) 840
MspR9I CCNGG 1 cut(s) 428
Mva1269I GAATGC 1 cut(s) 554
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 2 cut(s) 68, 713
NcoI CCATGG 1 cut(s) 405
NdeII GATC 5 cut(s) 6, 42, 127, 331, 421
NlaIII CATG 5 cut(s) 33, 122, 286, 349, 409
NlaIV GGNNCC 2 cut(s) 318, 411
NmeAIII GCCGAG 1 cut(s) 793
NmuCI GTSAC 3 cut(s) 32, 478, 517
NspI RCATGY 2 cut(s) 33, 349
PciI ACATGT 1 cut(s) 345
PctI GAATGC 1 cut(s) 554
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 4 cut(s) 241, 359, 496, 525
PkrI GCNGC 1 cut(s) 417
PleI GAGTC 2 cut(s) 439, 622
PpsI GAGTC 2 cut(s) 439, 622
Ppu21I YACGTR 1 cut(s) 680
PscI ACATGT 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 426
PspEI GGTNACC 1 cut(s) 478
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 2 cut(s) 318, 411
PspPI GGNCC 3 cut(s) 402, 409, 705
PsuI RGATCY 2 cut(s) 42, 331
RsaI GTAC 2 cut(s) 318, 396
RsaNI GTAC 2 cut(s) 317, 395
RseI CAYNNNNRTG 1 cut(s) 815
SaqAI TTAA 3 cut(s) 437, 639, 743
SatI GCNGC 1 cut(s) 416
Sau3AI GATC 5 cut(s) 6, 42, 127, 331, 421
Sau96I GGNCC 3 cut(s) 402, 409, 705
SchI GAGTC 2 cut(s) 440, 623
ScrFI CCNGG 1 cut(s) 428
SfaNI GCATC 2 cut(s) 156, 188
SinI GGWCC 2 cut(s) 402, 409
SmiMI CAYNNNNRTG 1 cut(s) 815
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SnaBI TACGTA 1 cut(s) 680
Sse9I AATT 8 cut(s) 57, 65, 75, 123, 597, 636, 799, 881
SsiI CCGC 2 cut(s) 218, 413
SspI AATATT 1 cut(s) 646
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 3 cut(s) 160, 373, 475
TaiI ACGT 1 cut(s) 682
TasI AATT 8 cut(s) 57, 65, 75, 123, 597, 636, 799, 881
TfiI GAWTC 4 cut(s) 241, 359, 496, 525
Tru1I TTAA 3 cut(s) 437, 639, 743
Tru9I TTAA 3 cut(s) 437, 639, 743
TscAI CASTG 2 cut(s) 391, 480
TseFI GTSAC 3 cut(s) 32, 478, 517
TseI GCWGC 1 cut(s) 415
Tsp45I GTSAC 3 cut(s) 32, 478, 517
TspDTI ATGAA 4 cut(s) 107, 299, 455, 517
TspRI CASTG 2 cut(s) 391, 480
VpaK11BI GGWCC 2 cut(s) 402, 409
XapI RAATTY 3 cut(s) 75, 799, 881
XceI RCATGY 2 cut(s) 33, 349
XmiI GTMKAC 1 cut(s) 381
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.