Rh1BG107900

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
18666222 .. 18667991
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG107900.1

Sequence Viewer

Length: 1770 bp
ATGGCGAATGCTATGTTTTCTTTCGGGGAGTTCAACTTTGGTGGAGTTCAGGATAAACTTGGTTCCACTGTTGAGAATATGGAAGTGGAGAGCATTGGGGGGAAACAAGTTTATGAAGCTGAAAATTGGGGTGGATTTGGTTCCCTTTGTTCTGATTATGGAATTTATGGAAATGGCTTCTCGGATTTTACCAAATACCAACAACAAGATCAGCAGCTGCAGCAGCAGCCACAATTGATTTCGGACTATGGGGTCTTCGATGACATGCAGTTTCAGTTTGGTGCTCTCTCCCCACCACTTCAAGCATGCTTGGAGGAGATAGCTAAGCTTGAGAGTATCCCAACTTTAGTTCCACATGTTGAACCACCCAAGAAAGAATTAAAGAGAGACTCTTTTTCTGTAGCAGGGCTTGATCTCTTAAACAACTATGGCAGCAGGTTTAAACGCTTGAATGGGGAAAGAATTGTCGAGCCTAACCCTTATCCAGGGTACACAGAGGTGAAGAGTAGCAAGTTATCAACAGAAGAAATCATGAGGGTGGCAGGAGCAAGGTTCATTCGTACTGCTTCCCAAGTGTCGCCATCTGATATACCCTCCATGCTTAGCCATCCTTTTGAACTCTCCTTTGCTGGCCTCTCCAATGAGGAGAGTAGAGATGTGGAACTTGTGGAATTCCTTCTTGCTTCAGCTGAGAAAGTAGGATATCAACAATATGAGCGTGCAAGCAAGTTGCTTGACCTCTGTGAGAGGTTGTGTTCTGATAGAGGAAATCCGGTTGAACGAGTGGTTTTCTACTTTTGTGAAGCTCTTCGAGACAAGATTGATCGAGAAACTGGAAGAACCACACAAAAAAAGCAGTCATTTGATATTGATAAGGCAATGATGATCACAAATGAAACCTCCCTTGCATGTCACAACAAGATCCCTTTCTCCCAAGTTGCACAATTTGCTGGAATTCAAGCCATAGTAGAAAAGGTGGTTGAGGCTAAGAAGGTTCATGTAATTGATCTGGAAATCAGGAGTGGGGTGCAATGGACAGTTCTGATGCAAGCCTTAGCATCCCGTGATTTCCCGCTTGAACTTCTCAAGATAAGTGCTGTCGGAACTTCTAAAGAAACGATTCAGAATACAGGTAAGTGGTTGGAGAGTTTTGCCAAAACCATGAACTTACCATTTTCTTTCAAAATGGTGTTGGTACCAGATATTCTAGATCTCAAAGAAGACATGTTTGAGCTAGATTCTGAGGAAACGGTTGCAGTCTACACTCAGTTCGTACTGAGGTCCATGGTCCCGCAGCCAGATCGCCTGGATTCTTTAATGAAAGTGATAAAGAACATCCATCCATCTGTAACAGTGGTCACCGAAGTTGAGGCGAATCACAACTCACCTGTATTTGTGACCAGATTCATTGAAGCCCTTTTCTTCTTTAGTGCATTCTTTGACTGCGTGGAAACTTGTATTGAACAAAATGATCCAATTAGAAAGAGTTTGGAGTCGAACTACTTTGGAAATGGAATTAAAAATATTGTGGCAACTGAAGGAAAGGAAAGGAAGATACGTAATGTGAAGATTGATGTTTGGAGGGCATTTTTTGCTCGCTATGGAATGGAGGAGATGGAGTTAAGCCCATCATCCTTATATCAAGCCGAGCTGGTGGCTAAGAACTTTCCCTGTGGGAATTCTTGCACCATCACTATGGATGGGAAAACCCTGATTGCCGGATGGAAAGGAACACCTCTCCAATCTCTTTCTCTTTGGAAATTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

589

Amino Acids

66.39

Weight (kDa)

5.09

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 223 - 587 5.1e-83 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015682)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
Acc36I ACCTGC 1 cut(s) 426
Acc65I GGTACC 1 cut(s) 1195
AccB1I GGYRCC 1 cut(s) 1195
AccI GTMKAC 1 cut(s) 1260
AciI CCGC 2 cut(s) 1073, 1292
AclWI GGATC 2 cut(s) 916, 1466
AcsI RAATTY 5 cut(s) 162, 671, 954, 1678, 1760
AcuI CTGAAG 2 cut(s) 669, 1557
AfaI GTAC 4 cut(s) 491, 562, 1197, 1275
AfiI CCNNNNNNNGG 1 cut(s) 485
AflIII ACRYGT 2 cut(s) 355, 1224
AjnI CCWGG 2 cut(s) 484, 1305
AleI CACNNNNGTG 1 cut(s) 497
AluBI AGCT 8 cut(s) 119, 217, 323, 328, 689, 806, 1234, 1651
AluI AGCT 8 cut(s) 119, 217, 323, 328, 689, 806, 1234, 1651
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 2 cut(s) 381, 807
AlwI GGATC 2 cut(s) 916, 1466
AlwNI CAGNNNCTG 1 cut(s) 217
AoxI GGCC 1 cut(s) 631
ApeKI GCWGC 7 cut(s) 214, 217, 220, 223, 226, 432, 1294
ApoI RAATTY 5 cut(s) 162, 671, 954, 1678, 1760
Asp700I GAANNNNTTC 3 cut(s) 675, 807, 1119
Asp718I GGTACC 1 cut(s) 1195
AspS9I GGNCC 2 cut(s) 1281, 1288
AsuHPI GGTGA 3 cut(s) 511, 1351, 1377
AvaII GGWCC 2 cut(s) 1281, 1288
BanI GGYRCC 1 cut(s) 1195
BbsI GAAGAC 2 cut(s) 247, 1227
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 7 cut(s) 204, 226, 232, 235, 238, 444, 1306
BccI CCATC 9 cut(s) 589, 615, 1347, 1351, 1609, 1636, 1694, 1697, 1716
BcgI CGANNNNNNTGC 2 cut(s) 1283, 1317
BciT130I CCWGG 2 cut(s) 486, 1307
BciVI GTATCC 1 cut(s) 347
BclI TGATCA 1 cut(s) 885
BcoDI GTCTC 2 cut(s) 381, 807
BfaI CTAG 2 cut(s) 1208, 1235
BfmI CTRYAG 2 cut(s) 218, 399
BfuAI ACCTGC 1 cut(s) 426
BfuI GTATCC 1 cut(s) 347
BglII AGATCT 1 cut(s) 1210
BisI GCNGC 7 cut(s) 215, 218, 221, 224, 227, 433, 1295
BlpI GCTNAGC 2 cut(s) 324, 602
BlsI GCNGC 7 cut(s) 216, 219, 222, 225, 228, 434, 1296
Bme1390I CCNGG 2 cut(s) 486, 1307
Bme18I GGWCC 2 cut(s) 1281, 1288
BmgT120I GGNCC 2 cut(s) 1281, 1288
BmiI GGNNCC 4 cut(s) 64, 142, 1197, 1290
BmrFI CCNGG 2 cut(s) 486, 1307
BmsI GCATC 2 cut(s) 1035, 1067
BpiI GAAGAC 2 cut(s) 247, 1227
Bpu10I CCTNAGC 1 cut(s) 1054
Bpu1102I GCTNAGC 2 cut(s) 324, 602
BpuEI CTTGAG 2 cut(s) 350, 1070
BsaAI YACGTR 1 cut(s) 1559
BsaJI CCNNGG 2 cut(s) 485, 1284
BsaWI WCCGGW 1 cut(s) 772
BsaXI ACNNNNNCTCC 2 cut(s) 1604, 1634
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse1I ACTGG 1 cut(s) 838
Bse3DI GCAATG 2 cut(s) 885, 1037
BseBI CCWGG 2 cut(s) 486, 1307
BseDI CCNNGG 2 cut(s) 485, 1284
BseGI GGATG 7 cut(s) 607, 1058, 1335, 1339, 1631, 1705, 1727
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMI GCAATG 2 cut(s) 885, 1037
BseMII CTCAG 4 cut(s) 681, 1233, 1268, 1280
BseNI ACTGG 1 cut(s) 838
BseRI GAGGAG 3 cut(s) 329, 659, 1625
BseXI GCAGC 7 cut(s) 204, 226, 232, 235, 238, 444, 1306
BshFI GGCC 1 cut(s) 633
BshNI GGYRCC 1 cut(s) 1195
BsiHKAI GWGCWC 1 cut(s) 286
BsiSI CCGG 2 cut(s) 773, 1719
BslFI GGGAC 1 cut(s) 1274
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 2 cut(s) 381, 807
BsmFI GGGAC 1 cut(s) 1274
BsmI GAATGC 2 cut(s) 13, 1433
BsnI GGCC 1 cut(s) 633
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 9 cut(s) 208, 412, 823, 885, 921, 1006, 1210, 1300, 1471
Bsp1720I GCTNAGC 2 cut(s) 324, 602
Bsp19I CCATGG 1 cut(s) 1284
BspACI CCGC 2 cut(s) 1073, 1292
BspANI GGCC 1 cut(s) 633
BspCNI CTCAG 4 cut(s) 682, 1234, 1269, 1279
BspHI TCATGA 1 cut(s) 531
BspLI GGNNCC 4 cut(s) 64, 142, 1197, 1290
BspMAI CTGCAG 1 cut(s) 222
BspMI ACCTGC 1 cut(s) 426
BspPI GGATC 2 cut(s) 916, 1466
BspQI GCTCTTC 1 cut(s) 813
BspT107I GGYRCC 1 cut(s) 1195
BsrDI GCAATG 2 cut(s) 885, 1037
BsrI ACTGG 1 cut(s) 838
BssECI CCNNGG 2 cut(s) 485, 1284
BssMI GATC 9 cut(s) 208, 412, 823, 885, 921, 1006, 1210, 1300, 1471
BssT1I CCWWGG 1 cut(s) 1284
Bst2UI CCWGG 2 cut(s) 486, 1307
Bst4CI ACNGT 4 cut(s) 70, 1039, 1252, 1354
Bst6I CTCTTC 2 cut(s) 497, 813
BstAPI GCANNNNNTGC 2 cut(s) 947, 1592
BstBAI YACGTR 1 cut(s) 1559
BstC8I GCNNGC 6 cut(s) 307, 631, 720, 724, 1050, 1597
BstDEI CTNAG 9 cut(s) 324, 602, 690, 987, 1054, 1242, 1266, 1277, 1659
BstDSI CCRYGG 1 cut(s) 1284
BstEII GGTNACC 1 cut(s) 1357
BstENI CCTNNNNNAGG 1 cut(s) 483
BstF5I GGATG 7 cut(s) 607, 1058, 1335, 1339, 1631, 1705, 1727
BstKTI GATC 9 cut(s) 211, 415, 826, 888, 924, 1009, 1213, 1303, 1474
BstMAI GTCTC 2 cut(s) 381, 807
BstMBI GATC 9 cut(s) 208, 412, 823, 885, 921, 1006, 1210, 1300, 1471
BstMWI GCNNNNNNNGC 5 cut(s) 220, 223, 226, 947, 1592
BstNI CCWGG 2 cut(s) 486, 1307
BstNSI RCATGY 5 cut(s) 268, 309, 359, 912, 1228
BstPI GGTNACC 1 cut(s) 1357
BstSCI CCNGG 2 cut(s) 484, 1305
BstSFI CTRYAG 2 cut(s) 218, 399
BstSNI TACGTA 1 cut(s) 1559
BstV1I GCAGC 7 cut(s) 204, 226, 232, 235, 238, 444, 1306
BstV2I GAAGAC 2 cut(s) 247, 1227
BstX2I RGATCY 2 cut(s) 921, 1210
BstXI CCANNNNNNTGG 1 cut(s) 1696
BstYI RGATCY 2 cut(s) 921, 1210
BsuI GTATCC 1 cut(s) 347
BsuRI GGCC 1 cut(s) 633
BtgI CCRYGG 1 cut(s) 1284
BtsCI GGATG 7 cut(s) 607, 1058, 1335, 1339, 1631, 1705, 1727
BtsIMutI CAGTG 2 cut(s) 66, 1359
BveI ACCTGC 1 cut(s) 426
Cac8I GCNNGC 6 cut(s) 307, 631, 720, 724, 1050, 1597
CaiI CAGNNNCTG 1 cut(s) 217
CciI TCATGA 1 cut(s) 531
Cfr13I GGNCC 2 cut(s) 1281, 1288
Csp6I GTAC 4 cut(s) 490, 561, 1196, 1274
CspCI CAANNNNNGTGG 2 cut(s) 22, 57
CviQI GTAC 4 cut(s) 490, 561, 1196, 1274
DdeI CTNAG 9 cut(s) 324, 602, 690, 987, 1054, 1242, 1266, 1277, 1659
DpnI GATC 9 cut(s) 210, 414, 825, 887, 923, 1008, 1212, 1302, 1473
DpnII GATC 9 cut(s) 208, 412, 823, 885, 921, 1006, 1210, 1300, 1471
DraI TTTAAA 1 cut(s) 442
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
Eam1104I CTCTTC 2 cut(s) 497, 813
EarI CTCTTC 2 cut(s) 497, 813
Eco105I TACGTA 1 cut(s) 1559
Eco130I CCWWGG 1 cut(s) 1284
Eco32I GATATC 1 cut(s) 704
Eco47I GGWCC 2 cut(s) 1281, 1288
Eco57I CTGAAG 2 cut(s) 669, 1557
Eco91I GGTNACC 1 cut(s) 1357
EcoNI CCTNNNNNAGG 1 cut(s) 483
EcoO65I GGTNACC 1 cut(s) 1357
EcoRI GAATTC 3 cut(s) 671, 954, 1678
EcoRII CCWGG 2 cut(s) 484, 1305
EcoRV GATATC 1 cut(s) 704
EcoT14I CCWWGG 1 cut(s) 1284
ErhI CCWWGG 1 cut(s) 1284
FaqI GGGAC 1 cut(s) 1274
FauI CCCGC 2 cut(s) 1080, 1299
FbaI TGATCA 1 cut(s) 885
FblI GTMKAC 1 cut(s) 1260
Fnu4HI GCNGC 7 cut(s) 215, 218, 221, 224, 227, 433, 1295
FokI GGATG 7 cut(s) 594, 1045, 1322, 1326, 1618, 1712, 1734
Fsp4HI GCNGC 7 cut(s) 215, 218, 221, 224, 227, 433, 1295
FspBI CTAG 2 cut(s) 1208, 1235
GluI GCNGC 7 cut(s) 215, 218, 221, 224, 227, 433, 1295
HaeIII GGCC 1 cut(s) 633
HapII CCGG 2 cut(s) 773, 1719
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 7 cut(s) 389, 1120, 1238, 1310, 1375, 1404, 1493
HpaII CCGG 2 cut(s) 773, 1719
HphI GGTGA 3 cut(s) 511, 1351, 1377
Hpy166II GTNNAC 2 cut(s) 492, 1261
Hpy188I TCNGA 9 cut(s) 154, 184, 244, 586, 760, 1044, 1103, 1125, 1243
Hpy188III TCNNGA 8 cut(s) 50, 532, 812, 827, 1010, 1018, 1087, 1208
Hpy8I GTNNAC 2 cut(s) 492, 1261
HpyAV CCTTC 3 cut(s) 686, 985, 1532
HpyCH4III ACNGT 4 cut(s) 70, 1039, 1252, 1354
HpyCH4IV ACGT 1 cut(s) 1558
HpyF10VI GCNNNNNNNGC 5 cut(s) 220, 223, 226, 947, 1592
HpyF3I CTNAG 9 cut(s) 324, 602, 690, 987, 1054, 1242, 1266, 1277, 1659
HpySE526I ACGT 1 cut(s) 1558
KpnI GGTACC 1 cut(s) 1199
Ksp22I TGATCA 1 cut(s) 885
Kzo9I GATC 9 cut(s) 208, 412, 823, 885, 921, 1006, 1210, 1300, 1471
LguI GCTCTTC 1 cut(s) 813
LmnI GCTCC 1 cut(s) 545
Lsp1109I GCAGC 7 cut(s) 204, 226, 232, 235, 238, 444, 1306
LweI GCATC 2 cut(s) 1035, 1067
MaeI CTAG 2 cut(s) 1208, 1235
MaeII ACGT 1 cut(s) 1558
MaeIII GTNAC 4 cut(s) 911, 1348, 1357, 1396
MalI GATC 9 cut(s) 210, 414, 825, 887, 923, 1008, 1212, 1302, 1473
MboI GATC 9 cut(s) 208, 412, 823, 885, 921, 1006, 1210, 1300, 1471
MboII GAAGA 9 cut(s) 247, 514, 536, 800, 849, 1232, 1414, 1564, 1579
MfeI CAATTG 1 cut(s) 233
MflI RGATCY 2 cut(s) 921, 1210
MhlI GDGCHC 1 cut(s) 286
MlyI GAGTC 2 cut(s) 383, 1502
MmeI TCCRAC 2 cut(s) 1081, 1122
MroXI GAANNNNTTC 3 cut(s) 675, 807, 1119
MseI TTAA 6 cut(s) 380, 419, 441, 1316, 1518, 1622
MslI CAYNNNNRTG 3 cut(s) 497, 536, 1694
MspA1I CMGCKG 2 cut(s) 217, 689
MspI CCGG 2 cut(s) 773, 1719
MspR9I CCNGG 2 cut(s) 486, 1307
MssI GTTTAAAC 1 cut(s) 442
MunI CAATTG 1 cut(s) 233
Mva1269I GAATGC 2 cut(s) 13, 1433
MvaI CCWGG 2 cut(s) 486, 1307
MwoI GCNNNNNNNGC 5 cut(s) 220, 223, 226, 947, 1592
NcoI CCATGG 1 cut(s) 1284
NdeII GATC 9 cut(s) 208, 412, 823, 885, 921, 1006, 1210, 1300, 1471
NlaIV GGNNCC 4 cut(s) 64, 142, 1197, 1290
NmeAIII GCCGAG 1 cut(s) 1672
NmuCI GTSAC 3 cut(s) 911, 1357, 1396
NspI RCATGY 5 cut(s) 268, 309, 359, 912, 1228
OliI CACNNNNGTG 1 cut(s) 497
PaeI GCATGC 1 cut(s) 309
PagI TCATGA 1 cut(s) 531
PciI ACATGT 2 cut(s) 355, 1224
PciSI GCTCTTC 1 cut(s) 813
PctI GAATGC 2 cut(s) 13, 1433
PdmI GAANNNNTTC 3 cut(s) 675, 807, 1119
PfeI GAWTC 5 cut(s) 1120, 1238, 1310, 1375, 1404
PkrI GCNGC 7 cut(s) 216, 219, 222, 225, 228, 434, 1296
PleI GAGTC 2 cut(s) 383, 1501
PmeI GTTTAAAC 1 cut(s) 442
PpsI GAGTC 2 cut(s) 383, 1501
Ppu21I YACGTR 1 cut(s) 1559
PscI ACATGT 2 cut(s) 355, 1224
Psp6I CCWGG 2 cut(s) 484, 1305
PspEI GGTNACC 1 cut(s) 1357
PspGI CCWGG 2 cut(s) 484, 1305
PspN4I GGNNCC 4 cut(s) 64, 142, 1197, 1290
PspPI GGNCC 2 cut(s) 1281, 1288
PstI CTGCAG 1 cut(s) 222
PstNI CAGNNNCTG 1 cut(s) 217
PsuI RGATCY 2 cut(s) 921, 1210
PvuII CAGCTG 2 cut(s) 217, 689
RsaI GTAC 4 cut(s) 491, 562, 1197, 1275
RsaNI GTAC 4 cut(s) 490, 561, 1196, 1274
RseI CAYNNNNRTG 3 cut(s) 497, 536, 1694
SapI GCTCTTC 1 cut(s) 813
SaqAI TTAA 6 cut(s) 380, 419, 441, 1316, 1518, 1622
SatI GCNGC 7 cut(s) 215, 218, 221, 224, 227, 433, 1295
Sau3AI GATC 9 cut(s) 208, 412, 823, 885, 921, 1006, 1210, 1300, 1471
Sau96I GGNCC 2 cut(s) 1281, 1288
SchI GAGTC 2 cut(s) 383, 1502
ScrFI CCNGG 2 cut(s) 486, 1307
SduI GDGCHC 1 cut(s) 286
SfaNI GCATC 2 cut(s) 1035, 1067
SfcI CTRYAG 2 cut(s) 218, 399
SinI GGWCC 2 cut(s) 1281, 1288
SmiMI CAYNNNNRTG 3 cut(s) 497, 536, 1694
SmlI CTYRAG 2 cut(s) 329, 1085
SmoI CTYRAG 2 cut(s) 329, 1085
SnaBI TACGTA 1 cut(s) 1559
SphI GCATGC 1 cut(s) 309
SsiI CCGC 2 cut(s) 1073, 1292
SspI AATATT 1 cut(s) 1525
SspMI CTAG 2 cut(s) 1208, 1235
StyD4I CCNGG 2 cut(s) 484, 1305
StyI CCWWGG 1 cut(s) 1284
TaaI ACNGT 4 cut(s) 70, 1039, 1252, 1354
TaiI ACGT 1 cut(s) 1561
TaqI TCGA 5 cut(s) 258, 468, 811, 826, 1496
TfiI GAWTC 5 cut(s) 1120, 1238, 1310, 1375, 1404
Tru1I TTAA 6 cut(s) 380, 419, 441, 1316, 1518, 1622
Tru9I TTAA 6 cut(s) 380, 419, 441, 1316, 1518, 1622
TscAI CASTG 2 cut(s) 73, 1359
TseFI GTSAC 3 cut(s) 911, 1357, 1396
TseI GCWGC 7 cut(s) 214, 217, 220, 223, 226, 432, 1294
Tsp45I GTSAC 3 cut(s) 911, 1357, 1396
TspDTI ATGAA 7 cut(s) 129, 544, 909, 986, 1178, 1334, 1396
TspRI CASTG 2 cut(s) 73, 1359
VpaK11BI GGWCC 2 cut(s) 1281, 1288
XagI CCTNNNNNAGG 1 cut(s) 483
XapI RAATTY 5 cut(s) 162, 671, 954, 1678, 1760
XbaI TCTAGA 1 cut(s) 1207
XceI RCATGY 5 cut(s) 268, 309, 359, 912, 1228
XmiI GTMKAC 1 cut(s) 1260
XmnI GAANNNNTTC 3 cut(s) 675, 807, 1119
XspI CTAG 2 cut(s) 1208, 1235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.