Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0017757

Physical Location & Seq

Genomic Coordinates Reverse (-)

10741943 .. 10742500

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G136800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTTCCAACACCCTCCGTCACCGGCTCAACAATGACCAACCCGTTTCCACCACGACCACCGCCACGACCTTGACCAAACAAGAAAAGGCCAAGAGAGCTCTAAGGTCCCTAGCCATAGGCATTGCAATTCCTCTCACCTTGACCACATCCACAATTTTCTTCTTCGGCTGGGGCCCCAAGTACCGGACCCTAACCCAACCCTTTTGGCTCCCTCCTCTCTGGCTCATAAACTTTGCCACATTCTTCTCTTCCTTCCTCATGGGTCTCTCAGCTTGGCTTGTTTGGGCTGACGGTGGATTTCATGCCCAATCCAATACATTTATCCTCTACATTGCCCAAGTTTCACTGAGCATTTTGTGGGGTCCTGTTCTGCTTGCGGCTGGGGCAGCTTGGCTTGGATTGGTCATTTGTTTGATGAATTTTGGAGCCCTGTTTGCCTGCTATAAGTGTTTTCGATGTGTGAATCCATTTGCCAAGGATCTTGTAAAACCTTGTTTGGCATGGGCGGCTTATCTTGCCATTGTTAATTGTAAGCTTCTGTGTCTTGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0020037 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031984 GO:0033013 GO:0033993 GO:0042170 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0071704 GO:0097159 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04080 ko04214 ko04979 ko05166 map04080 map04214 map04979 map05166

Pfam Domains

Protein Families

TspO_MBR

Protein Analysis

186

Amino Acids

20.51

Weight (kDa)

9.6

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017757)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G136800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422241
rosa_laevigata	RLG00000007626
rosa_multiflora	Rmu_sc0001603.1_g000001 Rmu_sc0003930.1_g000020
rosa_roxburghii	Rroxscaffold_5G00364350
rosa_rugosa	Rorug04G0178900
rosa_samantha	Rh4AG237900 Rh4BG241100 Rh4CG253000 Rh4DG236700
rosa_wichuraiana	Rw4G020590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	63, 380, 509
AclWI	GGATC	1 cut(s)	489
AcsI	RAATTY	1 cut(s)	421
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	186
AluBI	AGCT	4 cut(s)	101, 275, 392, 538
AluI	AGCT	4 cut(s)	101, 275, 392, 538
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	489
AoxI	GGCC	2 cut(s)	90, 175
ApaI	GGGCCC	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	1 cut(s)	421
AspS9I	GGNCC	5 cut(s)	108, 175, 176, 189, 365
AsuHPI	GGTGA	2 cut(s)	14, 130
AvaII	GGWCC	3 cut(s)	108, 189, 365
BaeGI	GKGCMC	1 cut(s)	179
BanII	GRGCYC	3 cut(s)	103, 179, 433
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	113
BisI	GCNGC	3 cut(s)	381, 390, 510
BlsI	GCNGC	3 cut(s)	382, 391, 511
Bme18I	GGWCC	3 cut(s)	108, 189, 365
BmgT120I	GGNCC	5 cut(s)	108, 175, 176, 189, 365
BmiI	GGNNCC	8 cut(s)	110, 176, 177, 178, 191, 212, 366, 430
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	477
BsaWI	WCCGGW	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	24
Bse3DI	GCAATG	2 cut(s)	123, 333
BseDI	CCNNGG	1 cut(s)	477
BseGI	GGATG	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	2 cut(s)	123, 333
BseMII	CTCAG	2 cut(s)	285, 341
BseRI	GAGGAG	1 cut(s)	207
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	401
BseYI	CCCAGC	2 cut(s)	171, 383
BshFI	GGCC	2 cut(s)	92, 177
BsiHKAI	GWGCWC	1 cut(s)	103
BsiSI	CCGG	2 cut(s)	25, 187
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	92, 177
Bso31I	GGTCTC	1 cut(s)	272
Bsp120I	GGGCCC	1 cut(s)	175
Bsp1286I	GDGCHC	3 cut(s)	103, 179, 433
Bsp143I	GATC	1 cut(s)	481
BspACI	CCGC	3 cut(s)	63, 380, 509
BspANI	GGCC	2 cut(s)	92, 177
BspCNI	CTCAG	2 cut(s)	284, 342
BspLI	GGNNCC	8 cut(s)	110, 176, 177, 178, 191, 212, 366, 430
BspPI	GGATC	1 cut(s)	489
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	2 cut(s)	123, 333
BsrFI	RCCGGY	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	477
BssMI	GATC	1 cut(s)	481
BssT1I	CCWWGG	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	378, 442
BstDEI	CTNAG	3 cut(s)	104, 271, 350
BstF5I	GGATG	1 cut(s)	149
BstKTI	GATC	1 cut(s)	484
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	481
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 386, 389, 437, 509, 518
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuRI	GGCC	2 cut(s)	92, 177
BtsCI	GGATG	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	347
Cac8I	GCNNGC	2 cut(s)	378, 442
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	5 cut(s)	108, 175, 176, 189, 365
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	3 cut(s)	262, 305, 504
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	3 cut(s)	104, 271, 350
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Ecl136II	GAGCTC	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	477
Eco24I	GRGCYC	3 cut(s)	103, 179, 433
Eco31I	GGTCTC	1 cut(s)	272
Eco47I	GGWCC	3 cut(s)	108, 189, 365
Eco53kI	GAGCTC	1 cut(s)	101
EcoICRI	GAGCTC	1 cut(s)	101
EcoO109I	RGGNCCY	4 cut(s)	108, 175, 176, 365
EcoT14I	CCWWGG	1 cut(s)	477
EcoT38I	GRGCYC	3 cut(s)	103, 179, 433
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	3 cut(s)	265, 308, 507
FaiI	YATR	6 cut(s)	119, 230, 263, 306, 447, 505
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	3 cut(s)	261, 304, 503
Fnu4HI	GCNGC	3 cut(s)	381, 390, 510
FokI	GGATG	1 cut(s)	136
FriOI	GRGCYC	3 cut(s)	103, 179, 433
Fsp4HI	GCNGC	3 cut(s)	381, 390, 510
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	3 cut(s)	381, 390, 510
GsaI	CCCAGC	2 cut(s)	175, 387
HaeIII	GGCC	2 cut(s)	92, 177
HapII	CCGG	2 cut(s)	25, 187
Hin1II	CATG	3 cut(s)	265, 308, 507
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	1 cut(s)	466
HpaII	CCGG	2 cut(s)	25, 187
HphI	GGTGA	2 cut(s)	14, 130
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 386, 389, 437, 509, 518
HpyF3I	CTNAG	3 cut(s)	104, 271, 350
Hsp92II	CATG	3 cut(s)	265, 308, 507
Kzo9I	GATC	1 cut(s)	481
LmnI	GCTCC	2 cut(s)	216, 428
LpnPI	CCDG	8 cut(s)	38, 157, 200, 208, 369, 381, 446, 454
Lsp1109I	GCAGC	1 cut(s)	401
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	4 cut(s)	154, 157, 238, 243
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	3 cut(s)	103, 179, 433
MluCI	AATT	4 cut(s)	129, 156, 421, 529
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	6 cut(s)	26, 144, 225, 228, 269, 338
MseI	TTAA	1 cut(s)	528
MspI	CCGG	2 cut(s)	25, 187
MwoI	GCNNNNNNNGC	6 cut(s)	98, 386, 389, 437, 509, 518
NdeII	GATC	1 cut(s)	481
NlaIII	CATG	3 cut(s)	265, 308, 507
NlaIV	GGNNCC	8 cut(s)	110, 176, 177, 178, 191, 212, 366, 430
NmuCI	GTSAC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	466
PkrI	GCNGC	3 cut(s)	382, 391, 511
PpuMI	RGGWCCY	2 cut(s)	108, 365
Psp124BI	GAGCTC	1 cut(s)	103
Psp5II	RGGWCCY	2 cut(s)	108, 365
PspFI	CCCAGC	2 cut(s)	171, 383
PspN4I	GGNNCC	8 cut(s)	110, 176, 177, 178, 191, 212, 366, 430
PspOMI	GGGCCC	1 cut(s)	175
PspPI	GGNCC	5 cut(s)	108, 175, 176, 189, 365
PspPPI	RGGWCCY	2 cut(s)	108, 365
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SacI	GAGCTC	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	3 cut(s)	381, 390, 510
Sau3AI	GATC	1 cut(s)	481
Sau96I	GGNCC	5 cut(s)	108, 175, 176, 189, 365
SduI	GDGCHC	3 cut(s)	103, 179, 433
SetI	ASST	8 cut(s)	74, 103, 110, 143, 277, 394, 496, 540
SinI	GGWCC	3 cut(s)	108, 189, 365
Sse9I	AATT	4 cut(s)	129, 156, 421, 529
SsiI	CCGC	3 cut(s)	63, 380, 509
SspMI	CTAG	1 cut(s)	113
SstI	GAGCTC	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	1 cut(s)	457
TasI	AATT	4 cut(s)	129, 156, 421, 529
TauI	GCSGC	2 cut(s)	383, 512
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	293, 434
TspGWI	ACGGA	1 cut(s)	8
TspRI	CASTG	1 cut(s)	354
VpaK11BI	GGWCC	3 cut(s)	108, 189, 365
XapI	RAATTY	1 cut(s)	421
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.