Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0017757

Physical Location & Seq

Genomic Coordinates Forward (+)

45588858 .. 45590604

Gene Structure 1747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00364350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGGACTCGCTGCCTGGCTTGTTTGGGCGGATGGTGGGTTTCATTCGCAATCCACTTCCAATTCGTTGTTCTTCTACATTGCTCAGATTTCGTTGAGCATCATTTGGGGTCCCGTTGTTCTTGTGTTTGGGGCGGCTTGGATGGGATTGCTTCTTTGTTTGGTGCATTTCGGAACTCTAATCGCTTGTTATATGAACTTTCGAGATGTGAATCCGTTTGCCAAAGATCTGGTAAAACCATGCTTGGCTTGGGCGGGATATCTCACCATTGTTAATAGTACGCTTTCATGCACGCCATGTGCTCGATTAAATGCCGACGCCGCTCGCGTCAGGTGGCACCCAGCGACACATGCCTCGGTTTTTCTTCTTCGCTGGGAGTTGGATGCTATTGTGATTGCGTGGTTTGTGAAGCCTCTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0020037 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031984 GO:0033013 GO:0033993 GO:0042170 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0071704 GO:0097159 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04080 ko04214 ko04979 ko05166 map04080 map04214 map04979 map05166

Pfam Domains

Protein Families

TspO_MBR

Protein Analysis

140

Amino Acids

15.52

Weight (kDa)

8.36

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TspO_MBR	PF03073	1 - 94	4.3e-19	TspO/MBR family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0017757)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G136800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422241
rosa_laevigata	RLG00000007626
rosa_multiflora	Rmu_sc0001603.1_g000001 Rmu_sc0003930.1_g000020
rosa_roxburghii	Rroxscaffold_5G00364350
rosa_rugosa	Rorug04G0178900
rosa_samantha	Rh4AG237900 Rh4BG241100 Rh4CG253000 Rh4DG236700
rosa_wichuraiana	Rw4G020590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	336
AccBSI	CCGCTC	1 cut(s)	323
AccII	CGCG	1 cut(s)	327
AciI	CCGC	4 cut(s)	29, 134, 254, 321
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	14
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
Alw21I	GWGCWC	1 cut(s)	304
ApeKI	GCWGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	304
BccI	CCATC	2 cut(s)	26, 136
BciT130I	CCWGG	1 cut(s)	16
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	3 cut(s)	12, 135, 321
BlsI	GCNGC	3 cut(s)	13, 136, 322
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	3 cut(s)	111, 112, 338
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	2 cut(s)	108, 373
BsaBI	GATNNNNATC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	3 cut(s)	37, 147, 388
BseJI	GATNNNNATC	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	98
BseYI	CCCAGC	2 cut(s)	340, 372
Bsh1236I	CGCG	1 cut(s)	327
BshNI	GGYRCC	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	304
BslFI	GGGAC	2 cut(s)	18, 96
BsmFI	GGGAC	2 cut(s)	18, 96
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	4 cut(s)	29, 134, 254, 321
BspCNI	CTCAG	1 cut(s)	97
BspFNI	CGCG	1 cut(s)	327
BspHI	TCATGA	1 cut(s)	419
BspLI	GGNNCC	3 cut(s)	111, 112, 338
BspT107I	GGYRCC	1 cut(s)	336
BsrBI	CCGCTC	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	1 cut(s)	226
BssNI	GRCGYC	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	16
BstACI	GRCGYC	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	293, 325
BstDEI	CTNAG	1 cut(s)	84
BstF5I	GGATG	3 cut(s)	37, 147, 388
BstFNI	CGCG	1 cut(s)	327
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 350
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	14
BstUI	CGCG	1 cut(s)	327
BstX2I	RGATCY	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	226
BtsCI	GGATG	3 cut(s)	37, 147, 388
Cac8I	GCNNGC	2 cut(s)	293, 325
CciI	TCATGA	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	2 cut(s)	316, 326
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	5 cut(s)	240, 288, 297, 350, 420
CviJI	RGCY	4 cut(s)	19, 137, 248, 412
CviKI_1	RGCY	4 cut(s)	19, 137, 248, 412
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
EciI	GGCGGA	1 cut(s)	44
Eco32I	GATATC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	14
EcoRV	GATATC	1 cut(s)	260
FaeI	CATG	5 cut(s)	243, 291, 300, 353, 423
FaiI	YATR	7 cut(s)	192, 194, 241, 289, 298, 351, 421
FaqI	GGGAC	2 cut(s)	18, 96
FatI	CATG	5 cut(s)	239, 287, 296, 349, 419
FauI	CCCGC	1 cut(s)	247
Fnu4HI	GCNGC	3 cut(s)	12, 135, 321
FokI	GGATG	3 cut(s)	44, 154, 395
Fsp4HI	GCNGC	3 cut(s)	12, 135, 321
GluI	GCNGC	3 cut(s)	12, 135, 321
GsaI	CCCAGC	2 cut(s)	344, 376
HgaI	GACGC	2 cut(s)	316, 326
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	5 cut(s)	243, 291, 300, 353, 423
HinfI	GANTC	2 cut(s)	6, 211
HphI	GGTGA	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	87, 173
Hpy188III	TCNNGA	2 cut(s)	203, 420
Hpy99I	CGWCG	1 cut(s)	320
HpyCH4V	TGCA	2 cut(s)	166, 291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 350
HpyF3I	CTNAG	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	5 cut(s)	243, 291, 300, 353, 423
KflI	GGGWCCC	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	226
LpnPI	CCDG	5 cut(s)	28, 215, 316, 354, 358
LweI	GCATC	2 cut(s)	108, 373
MalI	GATC	1 cut(s)	228
MbiI	CCGCTC	1 cut(s)	323
MboI	GATC	1 cut(s)	226
MboII	GAAGA	3 cut(s)	64, 356, 359
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	2 cut(s)	364, 423
MseI	TTAA	2 cut(s)	273, 308
MspR9I	CCNGG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	16
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	320, 350
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	5 cut(s)	243, 291, 300, 353, 423
NlaIV	GGNNCC	3 cut(s)	111, 112, 338
NspI	RCATGY	1 cut(s)	353
PagI	TCATGA	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	13, 136, 322
PpuMI	RGGWCCY	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	14
PspFI	CCCAGC	2 cut(s)	340, 372
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	3 cut(s)	111, 112, 338
PspPI	GGNCC	1 cut(s)	110
PspPPI	RGGWCCY	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	273, 308
SatI	GCNGC	3 cut(s)	12, 135, 321
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	1 cut(s)	335
SfaNI	GCATC	2 cut(s)	108, 373
SinI	GGWCC	1 cut(s)	110
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	4 cut(s)	29, 134, 254, 321
StyD4I	CCNGG	1 cut(s)	14
TaqI	TCGA	2 cut(s)	202, 304
TasI	AATT	1 cut(s)	61
TauI	GCSGC	2 cut(s)	137, 323
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	2 cut(s)	273, 308
Tru9I	TTAA	2 cut(s)	273, 308
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	3 cut(s)	32, 209, 276
TspGWI	ACGGA	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	110
XceI	RCATGY	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.