Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0017757

Physical Location & Seq

Genomic Coordinates Forward (+)

44442853 .. 44451990

Gene Structure 9138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG236700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGACTCGCTGCCTGGCTTGTTTGGGCGGATGGTGGGTTTCATTCGCAATCCACTTCCAATTCGTTGTTCTTCTACATTGCTCAGATTTCGTTAAGCGTCATTTGGGGTCCCGTTGTTCTTGTGTTTGGGGCGGCTTGGATGGGATTGCTTCTTTGTTTGGTGCATTTCGGAACTCTAATCGCTTGTTATATGAGCTTTCGAGATGTGAATCCGTTTGCCAAAGATCTGGTAAAACCATGCTTGGCTTGGGCGGGATATCTCACCATTGTTAATAGCACGCTTGAAATTGGTTGGATCCCACACCGGCCTTCCAGGCCATCAATCACTCAGGCGTCAGCCGTCCGTGGGATCCACGCCTCTACGTACTCCTTCACCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0020037 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031984 GO:0033013 GO:0033993 GO:0042170 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0071704 GO:0097159 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04080 ko04214 ko04979 ko05166 map04080 map04214 map04979 map05166

Pfam Domains

Protein Families

TspO_MBR

Protein Analysis

127

Amino Acids

13.94

Weight (kDa)

7.78

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TspO_MBR	PF03073	1 - 94	1e-19	TspO/MBR family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017757)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G136800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422241
rosa_laevigata	RLG00000007626
rosa_multiflora	Rmu_sc0001603.1_g000001 Rmu_sc0003930.1_g000020
rosa_roxburghii	Rroxscaffold_5G00364350
rosa_rugosa	Rorug04G0178900
rosa_samantha	Rh4AG237900 Rh4BG241100 Rh4CG253000 Rh4DG236700
rosa_wichuraiana	Rw4G020590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	29, 134, 254
AclWI	GGATC	4 cut(s)	292, 305, 346, 359
AcyI	GRCGYC	1 cut(s)	335
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	287
AjnI	CCWGG	2 cut(s)	14, 314
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	1 cut(s)	198
AluI	AGCT	1 cut(s)	198
AlwI	GGATC	4 cut(s)	292, 305, 346, 359
AoxI	GGCC	2 cut(s)	308, 317
ApeKI	GCWGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	256, 367
AvaII	GGWCC	1 cut(s)	110
BamHI	GGATCC	2 cut(s)	297, 351
BccI	CCATC	3 cut(s)	26, 136, 328
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	2 cut(s)	16, 316
BglI	GCCNNNNNGGC	1 cut(s)	316
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	2 cut(s)	12, 135
BlsI	GCNGC	2 cut(s)	13, 136
Bme1390I	CCNGG	2 cut(s)	16, 316
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	4 cut(s)	111, 112, 299, 353
BmrFI	CCNGG	2 cut(s)	16, 316
BsaAI	YACGTR	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse118I	RCCGGY	1 cut(s)	306
Bse3DI	GCAATG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	2 cut(s)	16, 316
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	2 cut(s)	37, 147
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	2 cut(s)	98, 344
BshFI	GGCC	2 cut(s)	310, 319
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	2 cut(s)	18, 96
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmFI	GGGAC	2 cut(s)	18, 96
BsnI	GGCC	2 cut(s)	310, 319
Bsp143I	GATC	3 cut(s)	226, 297, 351
BspACI	CCGC	3 cut(s)	29, 134, 254
BspANI	GGCC	2 cut(s)	310, 319
BspCNI	CTCAG	2 cut(s)	97, 343
BspLI	GGNNCC	4 cut(s)	111, 112, 299, 353
BspPI	GGATC	4 cut(s)	292, 305, 346, 359
BsrDI	GCAATG	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	306
BssAI	RCCGGY	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	3 cut(s)	226, 297, 351
BssNI	GRCGYC	1 cut(s)	335
Bst2UI	CCWGG	2 cut(s)	16, 316
BstACI	GRCGYC	1 cut(s)	335
BstBAI	YACGTR	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	2 cut(s)	84, 330
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	2 cut(s)	37, 147
BstKTI	GATC	3 cut(s)	229, 300, 354
BstMBI	GATC	3 cut(s)	226, 297, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstNI	CCWGG	2 cut(s)	16, 316
BstSCI	CCNGG	2 cut(s)	14, 314
BstSNI	TACGTA	1 cut(s)	366
BstX2I	RGATCY	3 cut(s)	226, 297, 351
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	3 cut(s)	226, 297, 351
BsuRI	GGCC	2 cut(s)	310, 319
BtgI	CCRYGG	1 cut(s)	346
BtsCI	GGATG	2 cut(s)	37, 147
Cac8I	GCNNGC	1 cut(s)	281
Cfr10I	RCCGGY	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	2 cut(s)	88, 324
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	1 cut(s)	240
CviJI	RGCY	7 cut(s)	19, 137, 198, 248, 310, 319, 341
CviKI_1	RGCY	7 cut(s)	19, 137, 198, 248, 310, 319, 341
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	2 cut(s)	84, 330
DpnI	GATC	3 cut(s)	228, 299, 353
DpnII	GATC	3 cut(s)	226, 297, 351
EciI	GGCGGA	1 cut(s)	44
Eco105I	TACGTA	1 cut(s)	366
Eco32I	GATATC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	14, 314
EcoRV	GATATC	1 cut(s)	260
FaeI	CATG	1 cut(s)	243
FaiI	YATR	3 cut(s)	192, 194, 241
FaqI	GGGAC	2 cut(s)	18, 96
FatI	CATG	1 cut(s)	239
FauI	CCCGC	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	12, 135
FokI	GGATG	2 cut(s)	44, 154
Fsp4HI	GCNGC	2 cut(s)	12, 135
GluI	GCNGC	2 cut(s)	12, 135
HaeIII	GGCC	2 cut(s)	310, 319
HapII	CCGG	1 cut(s)	307
HgaI	GACGC	2 cut(s)	88, 324
Hin1I	GRCGYC	1 cut(s)	335
Hin1II	CATG	1 cut(s)	243
HinfI	GANTC	2 cut(s)	6, 211
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	2 cut(s)	256, 367
Hpy188I	TCNGA	2 cut(s)	87, 173
Hpy188III	TCNNGA	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	321, 382
HpyCH4IV	ACGT	1 cut(s)	365
HpyCH4V	TGCA	1 cut(s)	166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	2 cut(s)	84, 330
HpySE526I	ACGT	1 cut(s)	365
Hsp92I	GRCGYC	1 cut(s)	335
Hsp92II	CATG	1 cut(s)	243
KflI	GGGWCCC	1 cut(s)	110
Kzo9I	GATC	3 cut(s)	226, 297, 351
LpnPI	CCDG	6 cut(s)	28, 215, 301, 317, 320, 328
MaeII	ACGT	1 cut(s)	365
MalI	GATC	3 cut(s)	228, 299, 353
MboI	GATC	3 cut(s)	226, 297, 351
MboII	GAAGA	1 cut(s)	64
MflI	RGATCY	3 cut(s)	226, 297, 351
MluCI	AATT	2 cut(s)	61, 288
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	1 cut(s)	370
MseI	TTAA	2 cut(s)	95, 273
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	2 cut(s)	16, 316
MvaI	CCWGG	2 cut(s)	16, 316
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeII	GATC	3 cut(s)	226, 297, 351
NlaIII	CATG	1 cut(s)	243
NlaIV	GGNNCC	4 cut(s)	111, 112, 299, 353
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	13, 136
Ppu21I	YACGTR	1 cut(s)	366
PpuMI	RGGWCCY	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	14, 314
PspGI	CCWGG	2 cut(s)	14, 314
PspN4I	GGNNCC	4 cut(s)	111, 112, 299, 353
PspPI	GGNCC	1 cut(s)	110
PspPPI	RGGWCCY	1 cut(s)	110
PsuI	RGATCY	3 cut(s)	226, 297, 351
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SaqAI	TTAA	2 cut(s)	95, 273
SatI	GCNGC	2 cut(s)	12, 135
Sau3AI	GATC	3 cut(s)	226, 297, 351
Sau96I	GGNCC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	16, 316
SetI	ASST	2 cut(s)	200, 368
SfiI	GGCCNNNNNGGCC	1 cut(s)	316
SinI	GGWCC	1 cut(s)	110
SnaBI	TACGTA	1 cut(s)	366
Sse9I	AATT	2 cut(s)	61, 288
SsiI	CCGC	3 cut(s)	29, 134, 254
StyD4I	CCNGG	2 cut(s)	14, 314
TaiI	ACGT	1 cut(s)	368
TaqI	TCGA	1 cut(s)	202
TasI	AATT	2 cut(s)	61, 288
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	2 cut(s)	95, 273
Tru9I	TTAA	2 cut(s)	95, 273
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	32
TspGWI	ACGGA	2 cut(s)	204, 335
VpaK11BI	GGWCC	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.