Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0017757

Physical Location & Seq

Genomic Coordinates Reverse (-)

19142926 .. 19144653

Gene Structure 1728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007626

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCTTCCAACATCCTCCAGCACCGAGTCACCAATGCCGACCAACCACCCTTGAACATTCCCCCCATTCCCACCAAACCAATAAGCACCACCATCACCAAACAAGCCAACAAGGCTAAGGCACATAGAGCCCTAAGGTCCCTAGCCATAGGCATTGCGGTCCCTTTCTTATTGTCCATGACCGTCATTCTCATCTTTGGCTCGGGCATCAGGTACCGTGCCATGTCCAAACCCTTTTGGTTCCCACCGGTTTGGATCATACACATGTCGTCATTGGGTTCCTCCATCCTCATGGGACTCGCTGCCTGGCTTGTTTGGGCGGATGGTGGGTTTCATTCGCAATCCACTTCCAATTCGTTGTTCTTCTACATTGCTCAAATTTCGTTAAGCATCATTTGGGGTCCCGTTGTTCTTGTGTTTGGGGCGGCTTGGATGGGATTGCTTCTTTGTCTGGTGCATTTCGGAACTCTAATCGCTTGTTATATGAGCTTTCGAGATGTGAATCCGTTTGCCAAAGATCTGGTAAAACCATGCTTGGCTTGGGCGGGATATCTCACAATTGTTAATAGTACGCTTTCCGAAATTTTGGATAATTGCAACGGAATTCTTGAATTTCCATGGATCCACCAGCTTTTCGTCTCCTCCCACCTCCCAACACATGTCGACCTAGAACCTGCGCTCCACTCCATTTCCGGCGAGTCCAGCTCTCACCGTGGATCGGAATCCCTAGACACTCCTTGGGAGGCGTTTGAGGAGCGGAGGGAGGGAGGAGTTGTCGTTGTAGACGAAGGTGGAGTACGGGTCGGGTTCTTGGTCCGTGGAGCTCTTGAAATTGCTGTGTCGCTGTTGTTTCTGGTCTTGGTGGAATTAAGAGTTAGAATCATCGTCACCGTTGACGACTACAGTGGGGTAGGGGTCGGGTTTCGGCAGGATTTCGTGAGAAAGGCTTCTTGGAAATTCACAGAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0020037 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031984 GO:0033013 GO:0033993 GO:0042170 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0071704 GO:0097159 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04080 ko04214 ko04979 ko05166 map04080 map04214 map04979 map05166

Pfam Domains

Protein Families

TspO_MBR

Protein Analysis

324

Amino Acids

35.59

Weight (kDa)

7.15

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TspO_MBR	PF03073	66 - 191	1.4e-25	TspO/MBR family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017757)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G136800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422241
rosa_laevigata	RLG00000007626
rosa_multiflora	Rmu_sc0001603.1_g000001 Rmu_sc0003930.1_g000020
rosa_roxburghii	Rroxscaffold_5G00364350
rosa_rugosa	Rorug04G0178900
rosa_samantha	Rh4AG237900 Rh4BG241100 Rh4CG253000 Rh4DG236700
rosa_wichuraiana	Rw4G020590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	682
Acc65I	GGTACC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	213
AccBSI	CCGCTC	1 cut(s)	757
AccI	GTMKAC	2 cut(s)	663, 783
AciI	CCGC	5 cut(s)	158, 320, 425, 545, 757
AclWI	GGATC	4 cut(s)	263, 616, 629, 724
AcsI	RAATTY	5 cut(s)	378, 582, 603, 611, 956
AfaI	GTAC	3 cut(s)	215, 571, 798
AfiI	CCNNNNNNNGG	1 cut(s)	718
AflIII	ACRYGT	2 cut(s)	264, 658
AgeI	ACCGGT	1 cut(s)	247
AgsI	TTSAA	3 cut(s)	55, 611, 830
AjnI	CCWGG	1 cut(s)	305
AjuI	GAANNNNNNNTTGG	4 cut(s)	344, 376, 934, 966
AloI	GAACNNNNNNTCC	2 cut(s)	663, 695
AluBI	AGCT	4 cut(s)	489, 631, 705, 824
AluI	AGCT	4 cut(s)	489, 631, 705, 824
Alw21I	GWGCWC	1 cut(s)	826
Alw26I	GTCTC	1 cut(s)	643
AlwI	GGATC	4 cut(s)	263, 616, 629, 724
Ama87I	CYCGRG	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	5 cut(s)	378, 582, 603, 611, 956
AsiGI	ACCGGT	1 cut(s)	247
Asp700I	GAANNNNTTC	1 cut(s)	946
Asp718I	GGTACC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	679
AspS9I	GGNCC	4 cut(s)	138, 160, 401, 814
AsuHPI	GGTGA	4 cut(s)	22, 88, 701, 880
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	4 cut(s)	138, 160, 401, 814
AxyI	CCTNAGG	1 cut(s)	134
BamHI	GGATCC	1 cut(s)	621
BanI	GGYRCC	1 cut(s)	213
BanII	GRGCYC	2 cut(s)	133, 826
BarI	GAAGNNNNNNTAC	2 cut(s)	780, 812
Bbv12I	GWGCWC	1 cut(s)	826
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	4 cut(s)	101, 293, 317, 427
BciT130I	CCWGG	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	3 cut(s)	143, 668, 728
BfmI	CTRYAG	1 cut(s)	901
BfuAI	ACCTGC	1 cut(s)	682
BglI	GCCNNNNNGGC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	517
BisI	GCNGC	2 cut(s)	303, 426
BlsI	GCNGC	2 cut(s)	304, 427
Bme1390I	CCNGG	1 cut(s)	307
Bme18I	GGWCC	4 cut(s)	138, 160, 401, 814
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	4 cut(s)	138, 160, 401, 814
BmiI	GGNNCC	8 cut(s)	140, 162, 215, 242, 280, 402, 403, 623
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	2 cut(s)	216, 399
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
Bpu10I	CCTNAGC	1 cut(s)	117
BsaBI	GATNNNNATC	2 cut(s)	501, 721
BsaJI	CCNNGG	4 cut(s)	617, 712, 737, 817
BsaWI	WCCGGW	1 cut(s)	247
BsaXI	ACNNNNNCTCC	8 cut(s)	663, 693, 759, 762, 786, 789, 792, 816
Bsc4I	CCNNNNNNNGG	1 cut(s)	718
Bse118I	RCCGGY	1 cut(s)	247
Bse21I	CCTNAGG	1 cut(s)	134
Bse3DI	GCAATG	2 cut(s)	153, 369
Bse8I	GATNNNNATC	2 cut(s)	501, 721
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	4 cut(s)	617, 712, 737, 817
BseGI	GGATG	4 cut(s)	12, 285, 328, 438
BseJI	GATNNNNATC	2 cut(s)	501, 721
BseLI	CCNNNNNNNGG	1 cut(s)	718
BseMI	GCAATG	2 cut(s)	153, 369
BseRI	GAGGAG	3 cut(s)	631, 767, 783
BseXI	GCAGC	1 cut(s)	289
BshNI	GGYRCC	1 cut(s)	213
BshTI	ACCGGT	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	826
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	248, 693
BslFI	GGGAC	4 cut(s)	124, 146, 309, 387
BslI	CCNNNNNNNGG	1 cut(s)	718
BsmAI	GTCTC	1 cut(s)	643
BsmBI	CGTCTC	1 cut(s)	643
BsmFI	GGGAC	4 cut(s)	124, 146, 309, 387
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	133, 826
Bsp143I	GATC	4 cut(s)	255, 517, 621, 716
Bsp19I	CCATGG	1 cut(s)	617
BspACI	CCGC	5 cut(s)	158, 320, 425, 545, 757
BspLI	GGNNCC	8 cut(s)	140, 162, 215, 242, 280, 402, 403, 623
BspMI	ACCTGC	1 cut(s)	682
BspPI	GGATC	4 cut(s)	263, 616, 629, 724
BspT107I	GGYRCC	1 cut(s)	213
BsrBI	CCGCTC	1 cut(s)	757
BsrDI	GCAATG	2 cut(s)	153, 369
BsrFI	RCCGGY	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	4 cut(s)	617, 712, 737, 817
BssMI	GATC	4 cut(s)	255, 517, 621, 716
BssT1I	CCWWGG	2 cut(s)	617, 737
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	5 cut(s)	184, 218, 713, 892, 905
BstDEI	CTNAG	2 cut(s)	117, 134
BstDSI	CCRYGG	3 cut(s)	617, 712, 817
BstF5I	GGATG	4 cut(s)	12, 285, 328, 438
BstHHI	GCGC	1 cut(s)	679
BstKTI	GATC	4 cut(s)	258, 520, 624, 719
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	4 cut(s)	255, 517, 621, 716
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 128, 702
BstNI	CCWGG	1 cut(s)	307
BstNSI	RCATGY	2 cut(s)	268, 662
BstSCI	CCNGG	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	901
BstV1I	GCAGC	1 cut(s)	289
BstX2I	RGATCY	2 cut(s)	517, 621
BstXI	CCANNNNNNTGG	3 cut(s)	252, 292, 520
BstYI	RGATCY	2 cut(s)	517, 621
Bsu36I	CCTNAGG	1 cut(s)	134
BtgI	CCRYGG	3 cut(s)	617, 712, 817
BtsCI	GGATG	4 cut(s)	12, 285, 328, 438
BtsIMutI	CAGTG	1 cut(s)	910
BveI	ACCTGC	1 cut(s)	682
CfoI	GCGC	1 cut(s)	679
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	4 cut(s)	138, 160, 401, 814
Csp6I	GTAC	3 cut(s)	214, 570, 797
CspAI	ACCGGT	1 cut(s)	247
CviAII	CATG	7 cut(s)	178, 223, 265, 292, 531, 618, 659
CviQI	GTAC	3 cut(s)	214, 570, 797
DdeI	CTNAG	2 cut(s)	117, 134
DpnI	GATC	4 cut(s)	257, 519, 623, 718
DpnII	GATC	4 cut(s)	255, 517, 621, 716
EciI	GGCGGA	1 cut(s)	335
Ecl136II	GAGCTC	1 cut(s)	824
Eco130I	CCWWGG	2 cut(s)	617, 737
Eco24I	GRGCYC	2 cut(s)	133, 826
Eco32I	GATATC	1 cut(s)	551
Eco47I	GGWCC	4 cut(s)	138, 160, 401, 814
Eco53kI	GAGCTC	1 cut(s)	824
Eco81I	CCTNAGG	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	824
EcoO109I	RGGNCCY	2 cut(s)	138, 401
EcoRI	GAATTC	1 cut(s)	603
EcoRII	CCWGG	1 cut(s)	305
EcoRV	GATATC	1 cut(s)	551
EcoT14I	CCWWGG	2 cut(s)	617, 737
EcoT38I	GRGCYC	2 cut(s)	133, 826
ErhI	CCWWGG	2 cut(s)	617, 737
Esp3I	CGTCTC	1 cut(s)	643
FaeI	CATG	7 cut(s)	181, 226, 268, 295, 534, 621, 662
FaqI	GGGAC	4 cut(s)	124, 146, 309, 387
FatI	CATG	7 cut(s)	177, 222, 264, 291, 530, 617, 658
FauI	CCCGC	1 cut(s)	538
FblI	GTMKAC	2 cut(s)	663, 783
Fnu4HI	GCNGC	2 cut(s)	303, 426
FokI	GGATG	3 cut(s)	272, 335, 445
FriOI	GRGCYC	2 cut(s)	133, 826
Fsp4HI	GCNGC	2 cut(s)	303, 426
FspBI	CTAG	3 cut(s)	143, 668, 728
GlaI	GCGC	1 cut(s)	678
GluI	GCNGC	2 cut(s)	303, 426
HapII	CCGG	2 cut(s)	248, 693
HhaI	GCGC	1 cut(s)	679
Hin1II	CATG	7 cut(s)	181, 226, 268, 295, 534, 621, 662
Hin6I	GCGC	1 cut(s)	677
HinP1I	GCGC	1 cut(s)	677
HincII	GTYRAC	2 cut(s)	664, 895
HindII	GTYRAC	2 cut(s)	664, 895
HinfI	GANTC	6 cut(s)	27, 297, 502, 698, 722, 879
HpaII	CCGG	2 cut(s)	248, 693
HphI	GGTGA	4 cut(s)	22, 88, 701, 880
Hpy166II	GTNNAC	3 cut(s)	664, 784, 895
Hpy188I	TCNGA	3 cut(s)	464, 580, 721
Hpy188III	TCNNGA	4 cut(s)	494, 608, 827, 937
Hpy8I	GTNNAC	3 cut(s)	664, 784, 895
HpyAV	CCTTC	1 cut(s)	782
HpyCH4III	ACNGT	5 cut(s)	184, 218, 713, 892, 905
HpyCH4V	TGCA	2 cut(s)	457, 597
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 128, 702
HpyF3I	CTNAG	2 cut(s)	117, 134
Hsp92II	CATG	7 cut(s)	181, 226, 268, 295, 534, 621, 662
HspAI	GCGC	1 cut(s)	677
KflI	GGGWCCC	1 cut(s)	401
KpnI	GGTACC	1 cut(s)	217
Kzo9I	GATC	4 cut(s)	255, 517, 621, 716
LmnI	GCTCC	3 cut(s)	684, 754, 821
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	2 cut(s)	216, 399
MaeI	CTAG	3 cut(s)	143, 668, 728
MaeIII	GTNAC	2 cut(s)	28, 886
MalI	GATC	4 cut(s)	257, 519, 623, 718
MbiI	CCGCTC	1 cut(s)	757
MboI	GATC	4 cut(s)	255, 517, 621, 716
MboII	GAAGA	1 cut(s)	355
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	2 cut(s)	517, 621
MhlI	GDGCHC	2 cut(s)	133, 826
MlyI	GAGTC	3 cut(s)	36, 291, 707
MmeI	TCCRAC	1 cut(s)	33
MroXI	GAANNNNTTC	1 cut(s)	946
MseI	TTAA	3 cut(s)	386, 564, 869
MslI	CAYNNNNRTG	2 cut(s)	263, 290
MspI	CCGG	2 cut(s)	248, 693
MspR9I	CCNGG	1 cut(s)	307
MunI	CAATTG	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	307
MwoI	GCNNNNNNNGC	3 cut(s)	113, 128, 702
NcoI	CCATGG	1 cut(s)	617
NdeII	GATC	4 cut(s)	255, 517, 621, 716
NlaIII	CATG	7 cut(s)	181, 226, 268, 295, 534, 621, 662
NlaIV	GGNNCC	8 cut(s)	140, 162, 215, 242, 280, 402, 403, 623
NmuCI	GTSAC	2 cut(s)	28, 886
NspI	RCATGY	2 cut(s)	268, 662
PciI	ACATGT	2 cut(s)	264, 658
PcsI	WCGNNNNNNNCGW	1 cut(s)	783
PdmI	GAANNNNTTC	1 cut(s)	946
PfeI	GAWTC	3 cut(s)	502, 722, 879
PinAI	ACCGGT	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	304, 427
PleI	GAGTC	3 cut(s)	35, 291, 706
PpsI	GAGTC	3 cut(s)	35, 291, 706
PpuMI	RGGWCCY	2 cut(s)	138, 401
PscI	ACATGT	2 cut(s)	264, 658
Psp124BI	GAGCTC	1 cut(s)	826
Psp5II	RGGWCCY	2 cut(s)	138, 401
Psp6I	CCWGG	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	8 cut(s)	140, 162, 215, 242, 280, 402, 403, 623
PspPI	GGNCC	4 cut(s)	138, 160, 401, 814
PspPPI	RGGWCCY	2 cut(s)	138, 401
PsuI	RGATCY	2 cut(s)	517, 621
RsaI	GTAC	3 cut(s)	215, 571, 798
RsaNI	GTAC	3 cut(s)	214, 570, 797
RseI	CAYNNNNRTG	2 cut(s)	263, 290
SacI	GAGCTC	1 cut(s)	826
SalI	GTCGAC	1 cut(s)	662
SaqAI	TTAA	3 cut(s)	386, 564, 869
SatI	GCNGC	2 cut(s)	303, 426
Sau3AI	GATC	4 cut(s)	255, 517, 621, 716
Sau96I	GGNCC	4 cut(s)	138, 160, 401, 814
SchI	GAGTC	3 cut(s)	36, 291, 707
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	2 cut(s)	133, 826
SfaNI	GCATC	2 cut(s)	216, 399
SfcI	CTRYAG	1 cut(s)	901
SinI	GGWCC	4 cut(s)	138, 160, 401, 814
SmiMI	CAYNNNNRTG	2 cut(s)	263, 290
SsiI	CCGC	5 cut(s)	158, 320, 425, 545, 757
SspMI	CTAG	3 cut(s)	143, 668, 728
SstI	GAGCTC	1 cut(s)	826
StyD4I	CCNGG	1 cut(s)	305
StyI	CCWWGG	2 cut(s)	617, 737
TaaI	ACNGT	5 cut(s)	184, 218, 713, 892, 905
TaqI	TCGA	2 cut(s)	493, 663
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	3 cut(s)	502, 722, 879
Tru1I	TTAA	3 cut(s)	386, 564, 869
Tru9I	TTAA	3 cut(s)	386, 564, 869
TscAI	CASTG	1 cut(s)	910
TseFI	GTSAC	2 cut(s)	28, 886
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	2 cut(s)	28, 886
TspDTI	ATGAA	1 cut(s)	323
TspGWI	ACGGA	3 cut(s)	495, 615, 806
TspRI	CASTG	1 cut(s)	910
VpaK11BI	GGWCC	4 cut(s)	138, 160, 401, 814
XapI	RAATTY	5 cut(s)	378, 582, 603, 611, 956
XceI	RCATGY	2 cut(s)	268, 662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	537
XmiI	GTMKAC	2 cut(s)	663, 783
XmnI	GAANNNNTTC	1 cut(s)	946
XspI	CTAG	3 cut(s)	143, 668, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.