Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0017757

Physical Location & Seq

Genomic Coordinates Forward (+)

40780890 .. 40781960

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG241100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCACATTCATTTTGAACAATCCCCATCCTTTCTCCCCCAAGTTTTTTCTTTCATGGCTTCCAACACCCTCCAGCACCGAATCACCAATGGCGACCAACCACCCTTGAACATTCCCCCCATTCCCACCAAACCAATAAGCACCACCATCACCAAACAAGCCAACAAGGCCAAGGCACATAGAGCCCTAAGGTCCCTAGCCATAGGCATTGCGGTCCCTTTCTTCTTGTCCATGACCGTCATTCTCATCTTTGGCTCGGGCATCAAGTATCGAGCCATGTCCAAACCCTTTTGGTTCCCACCGGTTTGGATCATACACATGTCGTCATTGGGTTCCTCCATCCTCATGGGACTCGCTGCCTGGCTTGTTTGGGCGGATGGTGGGTTTCATTCGCAATCCACTTCCAATTCGTTGTTCTTCTACATTGCTCAGATTTCGTTAAGCATCATTTGGGGTCCCGTTGTTCTTGTGTTTGGGGCGGCTTGGATGGGATTGCTTCTTTGTTTGGTGCATTTCGGAACTCTAATCGCTTGTTATATGAGCTTTCGAGACGTGAATCCGTTTGCCAAAGATCTGGTAAAACTATGCTTGGCTTGGGCGGGATATCTCACCATTGTTAACAGTACGCTTGTATGTATTGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0020037 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031984 GO:0033013 GO:0033993 GO:0042170 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0071704 GO:0097159 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04080 ko04214 ko04979 ko05166 map04080 map04214 map04979 map05166

Pfam Domains

Protein Families

TspO_MBR

Protein Analysis

215

Amino Acids

23.71

Weight (kDa)

9.65

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TspO_MBR	PF03073	86 - 210	8.1e-24	TspO/MBR family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017757)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G136800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422241
rosa_laevigata	RLG00000007626
rosa_multiflora	Rmu_sc0001603.1_g000001 Rmu_sc0003930.1_g000020
rosa_roxburghii	Rroxscaffold_5G00364350
rosa_rugosa	Rorug04G0178900
rosa_samantha	Rh4AG237900 Rh4BG241100 Rh4CG253000 Rh4DG236700
rosa_wichuraiana	Rw4G020590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	212, 374, 479, 599
AclWI	GGATC	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	642
AfaI	GTAC	1 cut(s)	625
AflIII	ACRYGT	1 cut(s)	318
AgeI	ACCGGT	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	17, 109
AjiI	CACGTC	1 cut(s)	553
AjnI	CCWGG	1 cut(s)	359
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	1 cut(s)	543
AluI	AGCT	1 cut(s)	543
Alw26I	GTCTC	1 cut(s)	543
AlwI	GGATC	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	642
AsiGI	ACCGGT	1 cut(s)	301
AspS9I	GGNCC	3 cut(s)	192, 214, 455
AsuHPI	GGTGA	3 cut(s)	76, 142, 601
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	3 cut(s)	192, 214, 455
AxyI	CCTNAGG	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	5 cut(s)	34, 155, 347, 371, 481
BciT130I	CCWGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	543
BfaI	CTAG	1 cut(s)	197
BglI	GCCNNNNNGGC	1 cut(s)	167
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	2 cut(s)	357, 480
BlsI	GCNGC	2 cut(s)	358, 481
Bme1390I	CCNGG	1 cut(s)	361
Bme18I	GGWCC	3 cut(s)	192, 214, 455
BmeT110I	CYCGRG	1 cut(s)	256
BmgBI	CACGTC	1 cut(s)	553
BmgT120I	GGNCC	3 cut(s)	192, 214, 455
BmiI	GGNNCC	6 cut(s)	194, 216, 296, 334, 456, 457
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	2 cut(s)	270, 453
BpmI	CTGGAG	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	301
Bse118I	RCCGGY	1 cut(s)	301
Bse21I	CCTNAGG	1 cut(s)	188
Bse3DI	GCAATG	2 cut(s)	207, 423
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	4 cut(s)	26, 339, 382, 492
BseMI	GCAATG	2 cut(s)	207, 423
BseMII	CTCAG	1 cut(s)	443
BseXI	GCAGC	1 cut(s)	343
BshFI	GGCC	1 cut(s)	170
BshTI	ACCGGT	1 cut(s)	301
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	4 cut(s)	178, 200, 363, 441
BsmAI	GTCTC	1 cut(s)	543
BsmBI	CGTCTC	1 cut(s)	543
BsmFI	GGGAC	4 cut(s)	178, 200, 363, 441
BsnI	GGCC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	309, 571
BspACI	CCGC	4 cut(s)	212, 374, 479, 599
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	442
BspLI	GGNNCC	6 cut(s)	194, 216, 296, 334, 456, 457
BspPI	GGATC	1 cut(s)	317
BsrDI	GCAATG	2 cut(s)	207, 423
BsrFI	RCCGGY	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	2 cut(s)	309, 571
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	2 cut(s)	238, 623
BstDEI	CTNAG	2 cut(s)	188, 429
BstF5I	GGATG	4 cut(s)	26, 339, 382, 492
BstKTI	GATC	2 cut(s)	312, 574
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	2 cut(s)	309, 571
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 182
BstNI	CCWGG	1 cut(s)	361
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	359
BstV1I	GCAGC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	571
BstXI	CCANNNNNNTGG	3 cut(s)	306, 346, 574
BstYI	RGATCY	1 cut(s)	571
Bsu36I	CCTNAGG	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	170
BtrI	CACGTC	1 cut(s)	553
BtsCI	GGATG	4 cut(s)	26, 339, 382, 492
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	3 cut(s)	192, 214, 455
Csp6I	GTAC	1 cut(s)	624
CspAI	ACCGGT	1 cut(s)	301
CviAII	CATG	5 cut(s)	55, 232, 277, 319, 346
CviQI	GTAC	1 cut(s)	624
DdeI	CTNAG	2 cut(s)	188, 429
DpnI	GATC	2 cut(s)	311, 573
DpnII	GATC	2 cut(s)	309, 571
EciI	GGCGGA	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	187
Eco32I	GATATC	1 cut(s)	605
Eco47I	GGWCC	3 cut(s)	192, 214, 455
Eco81I	CCTNAGG	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	256
EcoO109I	RGGNCCY	2 cut(s)	192, 455
EcoRII	CCWGG	1 cut(s)	359
EcoRV	GATATC	1 cut(s)	605
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	543
FaeI	CATG	5 cut(s)	58, 235, 280, 322, 349
FaqI	GGGAC	4 cut(s)	178, 200, 363, 441
FatI	CATG	5 cut(s)	54, 231, 276, 318, 345
FauI	CCCGC	1 cut(s)	592
Fnu4HI	GCNGC	2 cut(s)	357, 480
FokI	GGATG	4 cut(s)	13, 326, 389, 499
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	2 cut(s)	357, 480
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	2 cut(s)	357, 480
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	1 cut(s)	302
Hin1II	CATG	5 cut(s)	58, 235, 280, 322, 349
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	3 cut(s)	81, 351, 556
HpaI	GTTAAC	1 cut(s)	619
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	3 cut(s)	76, 142, 601
Hpy166II	GTNNAC	1 cut(s)	619
Hpy188I	TCNGA	2 cut(s)	432, 518
Hpy188III	TCNNGA	1 cut(s)	548
Hpy8I	GTNNAC	1 cut(s)	619
HpyCH4III	ACNGT	2 cut(s)	238, 623
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	2 cut(s)	4, 511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 182
HpyF3I	CTNAG	2 cut(s)	188, 429
HpySE526I	ACGT	1 cut(s)	552
Hsp92II	CATG	5 cut(s)	58, 235, 280, 322, 349
KflI	GGGWCCC	1 cut(s)	455
KspAI	GTTAAC	1 cut(s)	619
Kzo9I	GATC	2 cut(s)	309, 571
LpnPI	CCDG	5 cut(s)	86, 315, 346, 373, 560
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	2 cut(s)	270, 453
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	1 cut(s)	552
MalI	GATC	2 cut(s)	311, 573
MboI	GATC	2 cut(s)	309, 571
MboII	GAAGA	2 cut(s)	214, 409
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	2 cut(s)	406, 642
MlyI	GAGTC	1 cut(s)	345
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	3 cut(s)	80, 346, 353
MseI	TTAA	2 cut(s)	440, 618
MslI	CAYNNNNRTG	2 cut(s)	317, 344
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	2 cut(s)	167, 182
NdeII	GATC	2 cut(s)	309, 571
NlaIII	CATG	5 cut(s)	58, 235, 280, 322, 349
NlaIV	GGNNCC	6 cut(s)	194, 216, 296, 334, 456, 457
NspI	RCATGY	1 cut(s)	322
PciI	ACATGT	1 cut(s)	318
PfeI	GAWTC	2 cut(s)	81, 556
PinAI	ACCGGT	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	358, 481
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
PpuMI	RGGWCCY	2 cut(s)	192, 455
PscI	ACATGT	1 cut(s)	318
Psp5II	RGGWCCY	2 cut(s)	192, 455
Psp6I	CCWGG	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	359
PspN4I	GGNNCC	6 cut(s)	194, 216, 296, 334, 456, 457
PspPI	GGNCC	3 cut(s)	192, 214, 455
PspPPI	RGGWCCY	2 cut(s)	192, 455
PsuI	RGATCY	1 cut(s)	571
RsaI	GTAC	1 cut(s)	625
RsaNI	GTAC	1 cut(s)	624
RseI	CAYNNNNRTG	2 cut(s)	317, 344
SaqAI	TTAA	2 cut(s)	440, 618
SatI	GCNGC	2 cut(s)	357, 480
Sau3AI	GATC	2 cut(s)	309, 571
Sau96I	GGNCC	3 cut(s)	192, 214, 455
SchI	GAGTC	1 cut(s)	345
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	3 cut(s)	194, 545, 555
SfaNI	GCATC	2 cut(s)	270, 453
SinI	GGWCC	3 cut(s)	192, 214, 455
SmiMI	CAYNNNNRTG	2 cut(s)	317, 344
Sse9I	AATT	2 cut(s)	406, 642
SsiI	CCGC	4 cut(s)	212, 374, 479, 599
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	238, 623
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	2 cut(s)	271, 547
TasI	AATT	2 cut(s)	406, 642
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	81, 556
Tru1I	TTAA	2 cut(s)	440, 618
Tru9I	TTAA	2 cut(s)	440, 618
TseI	GCWGC	1 cut(s)	356
TspDTI	ATGAA	2 cut(s)	43, 377
TspGWI	ACGGA	1 cut(s)	549
VpaK11BI	GGWCC	3 cut(s)	192, 214, 455
XapI	RAATTY	1 cut(s)	642
XceI	RCATGY	1 cut(s)	322
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.