Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0017757

Physical Location & Seq

Genomic Coordinates Forward (+)

44610783 .. 44611434

Gene Structure 652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G020590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCTTCCAACAGCCTCCAGCACCGAGTCACCAATGCCGACCAACCACCCTTGAACATTCCCCCCATTCCCACCAAACCAATAAGCACCACCATCACCAAACAAGCCAACAAGGCCAAGGCACATAGAGCCCTAAGGTCCCTAGCCATAGGCATTGTGGTCCCTTTCTTCTTGTCCGTGACCGTCATTTTCATCTTTGGCTCGGGCATCAAGTATCGAGCCATGTCCAAACCCTTTTGGTTCCCACCGGTTTGGATCATACACATATCGTCATTGGGTTCCTCCATCCTCATGGGACTCGCTGCCTGGCTTGTTTGGGCGGATGGTGGGTTTCATTCGCAATCCACTTCCAATTCGTTGTTCTTCTACATTGCTCAGATTTCGTTAAGCATCATTTGGGGTCCCGTTGTTCTTGTGTTTGGGGCGGCTTGGATGGGATTGCTTCTTTGTTTGGTGCATTTCGGAACTCTAATCTCTTGTTATATGAGCTTTCGAGATGTGAATCCGTTTGCCAAAGATCTGGTAAAACCATGCTTGGCTTGGGCGGGATATCTCACCATTGTTAATAGTACGCTTGTATGTATTGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0020037 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031984 GO:0033013 GO:0033993 GO:0042170 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0071704 GO:0097159 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04080 ko04214 ko04979 ko05166 map04080 map04214 map04979 map05166

Pfam Domains

Protein Families

TspO_MBR

Protein Analysis

197

Amino Acids

21.55

Weight (kDa)

9.78

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TspO_MBR	PF03073	66 - 192	5.5e-26	TspO/MBR family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017757)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G136800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422241
rosa_laevigata	RLG00000007626
rosa_multiflora	Rmu_sc0001603.1_g000001 Rmu_sc0003930.1_g000020
rosa_roxburghii	Rroxscaffold_5G00364350
rosa_rugosa	Rorug04G0178900
rosa_samantha	Rh4AG237900 Rh4BG241100 Rh4CG253000 Rh4DG236700
rosa_wichuraiana	Rw4G020590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	320, 425, 545
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	588
AfaI	GTAC	1 cut(s)	571
AgeI	ACCGGT	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	305
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	1 cut(s)	489
AluI	AGCT	1 cut(s)	489
AlwI	GGATC	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	588
AsiGI	ACCGGT	1 cut(s)	247
AspS9I	GGNCC	3 cut(s)	138, 160, 401
AsuHPI	GGTGA	3 cut(s)	22, 88, 547
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	3 cut(s)	138, 160, 401
AxyI	CCTNAGG	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	4 cut(s)	101, 293, 317, 427
BciT130I	CCWGG	1 cut(s)	307
BfaI	CTAG	1 cut(s)	143
BglI	GCCNNNNNGGC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	517
BisI	GCNGC	2 cut(s)	303, 426
BlsI	GCNGC	2 cut(s)	304, 427
Bme1390I	CCNGG	1 cut(s)	307
Bme18I	GGWCC	3 cut(s)	138, 160, 401
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	3 cut(s)	138, 160, 401
BmiI	GGNNCC	6 cut(s)	140, 162, 242, 280, 402, 403
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	2 cut(s)	216, 399
BsaBI	GATNNNNATC	1 cut(s)	501
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	247
Bse118I	RCCGGY	1 cut(s)	247
Bse21I	CCTNAGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	369
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	3 cut(s)	285, 328, 438
BseJI	GATNNNNATC	1 cut(s)	501
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	389
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	1 cut(s)	116
BshTI	ACCGGT	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	248
BslFI	GGGAC	4 cut(s)	124, 146, 309, 387
BsmFI	GGGAC	4 cut(s)	124, 146, 309, 387
BsnI	GGCC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	255, 517
BspACI	CCGC	3 cut(s)	320, 425, 545
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	388
BspLI	GGNNCC	6 cut(s)	140, 162, 242, 280, 402, 403
BspPI	GGATC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	2 cut(s)	255, 517
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	1 cut(s)	184
BstDEI	CTNAG	2 cut(s)	134, 375
BstF5I	GGATG	3 cut(s)	285, 328, 438
BstKTI	GATC	2 cut(s)	258, 520
BstMBI	GATC	2 cut(s)	255, 517
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 128
BstNI	CCWGG	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	517
BstXI	CCANNNNNNTGG	3 cut(s)	252, 292, 520
BstYI	RGATCY	1 cut(s)	517
Bsu36I	CCTNAGG	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	3 cut(s)	285, 328, 438
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	3 cut(s)	138, 160, 401
Csp6I	GTAC	1 cut(s)	570
CspAI	ACCGGT	1 cut(s)	247
CviAII	CATG	3 cut(s)	223, 292, 531
CviQI	GTAC	1 cut(s)	570
DdeI	CTNAG	2 cut(s)	134, 375
DpnI	GATC	2 cut(s)	257, 519
DpnII	GATC	2 cut(s)	255, 517
EciI	GGCGGA	1 cut(s)	335
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	551
Eco47I	GGWCC	3 cut(s)	138, 160, 401
Eco81I	CCTNAGG	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	202
EcoO109I	RGGNCCY	2 cut(s)	138, 401
EcoRII	CCWGG	1 cut(s)	305
EcoRV	GATATC	1 cut(s)	551
EcoT14I	CCWWGG	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	3 cut(s)	226, 295, 534
FaqI	GGGAC	4 cut(s)	124, 146, 309, 387
FatI	CATG	3 cut(s)	222, 291, 530
FauI	CCCGC	1 cut(s)	538
Fnu4HI	GCNGC	2 cut(s)	303, 426
FokI	GGATG	3 cut(s)	272, 335, 445
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	2 cut(s)	303, 426
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	2 cut(s)	303, 426
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	248
Hin1II	CATG	3 cut(s)	226, 295, 534
HinfI	GANTC	3 cut(s)	27, 297, 502
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	3 cut(s)	22, 88, 547
Hpy188I	TCNGA	2 cut(s)	378, 464
Hpy188III	TCNNGA	1 cut(s)	494
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	1 cut(s)	457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 128
HpyF3I	CTNAG	2 cut(s)	134, 375
Hsp92II	CATG	3 cut(s)	226, 295, 534
KflI	GGGWCCC	1 cut(s)	401
Kzo9I	GATC	2 cut(s)	255, 517
LpnPI	CCDG	5 cut(s)	32, 261, 292, 319, 506
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	2 cut(s)	216, 399
MaeI	CTAG	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	28, 178
MalI	GATC	2 cut(s)	257, 519
MboI	GATC	2 cut(s)	255, 517
MboII	GAAGA	2 cut(s)	160, 355
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	2 cut(s)	352, 588
MlyI	GAGTC	2 cut(s)	36, 291
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	3 cut(s)	26, 292, 299
MseI	TTAA	2 cut(s)	386, 564
MslI	CAYNNNNRTG	1 cut(s)	290
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	307
MwoI	GCNNNNNNNGC	2 cut(s)	113, 128
NdeII	GATC	2 cut(s)	255, 517
NlaIII	CATG	3 cut(s)	226, 295, 534
NlaIV	GGNNCC	6 cut(s)	140, 162, 242, 280, 402, 403
NmuCI	GTSAC	2 cut(s)	28, 178
PfeI	GAWTC	1 cut(s)	502
PinAI	ACCGGT	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	304, 427
PleI	GAGTC	2 cut(s)	35, 291
PpsI	GAGTC	2 cut(s)	35, 291
PpuMI	RGGWCCY	2 cut(s)	138, 401
Psp5II	RGGWCCY	2 cut(s)	138, 401
Psp6I	CCWGG	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	6 cut(s)	140, 162, 242, 280, 402, 403
PspPI	GGNCC	3 cut(s)	138, 160, 401
PspPPI	RGGWCCY	2 cut(s)	138, 401
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	1 cut(s)	571
RsaNI	GTAC	1 cut(s)	570
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	386, 564
SatI	GCNGC	2 cut(s)	303, 426
Sau3AI	GATC	2 cut(s)	255, 517
Sau96I	GGNCC	3 cut(s)	138, 160, 401
SchI	GAGTC	2 cut(s)	36, 291
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	2 cut(s)	140, 491
SfaNI	GCATC	2 cut(s)	216, 399
SinI	GGWCC	3 cut(s)	138, 160, 401
SmiMI	CAYNNNNRTG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	352, 588
SsiI	CCGC	3 cut(s)	320, 425, 545
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	184
TaqI	TCGA	2 cut(s)	217, 493
TasI	AATT	2 cut(s)	352, 588
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	2 cut(s)	386, 564
Tru9I	TTAA	2 cut(s)	386, 564
TseFI	GTSAC	2 cut(s)	28, 178
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	2 cut(s)	28, 178
TspDTI	ATGAA	2 cut(s)	181, 323
TspGWI	ACGGA	2 cut(s)	166, 495
VpaK11BI	GGWCC	3 cut(s)	138, 160, 401
XapI	RAATTY	1 cut(s)	588
XcmI	CCANNNNNNNNNTGG	2 cut(s)	154, 537
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.