Belongs to the Casparian strip membrane proteins (CASP) family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g17260 |
| malus_domestica | MD13G1173400.v1.1 |
| prunus_persica | Prupe.1G141600_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0421181 |
| rosa_laevigata | RLG00000007708 |
| rosa_multiflora | Rmu_sc0009290.1_g000009 |
| rosa_roxburghii | Rroxscaffold_5G00363480 |
| rosa_rugosa | Rorug04G0170000 |
| rosa_samantha | Rh4AG229800 Rh4BG232500 Rh4CG244100 Rh4DG228300 |
| rosa_wichuraiana | Rw4G020400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 30 |
| AcuI | CTGAAG | 1 cut(s) | 70 |
| AluBI | AGCT | 1 cut(s) | 90 |
| AluI | AGCT | 1 cut(s) | 90 |
| Alw26I | GTCTC | 1 cut(s) | 157 |
| AoxI | GGCC | 1 cut(s) | 30 |
| ApeKI | GCWGC | 1 cut(s) | 39 |
| AspS9I | GGNCC | 1 cut(s) | 192 |
| AvaII | GGWCC | 1 cut(s) | 192 |
| BanII | GRGCYC | 1 cut(s) | 236 |
| BbvI | GCAGC | 1 cut(s) | 51 |
| BccI | CCATC | 1 cut(s) | 138 |
| BcoDI | GTCTC | 1 cut(s) | 157 |
| BfaI | CTAG | 1 cut(s) | 134 |
| BisI | GCNGC | 1 cut(s) | 40 |
| BlsI | GCNGC | 1 cut(s) | 41 |
| Bme18I | GGWCC | 1 cut(s) | 192 |
| BmgT120I | GGNCC | 1 cut(s) | 192 |
| BmrI | ACTGGG | 1 cut(s) | 23 |
| BmuI | ACTGGG | 1 cut(s) | 23 |
| BsaJI | CCNNGG | 1 cut(s) | 27 |
| Bse1I | ACTGG | 2 cut(s) | 18, 40 |
| Bse3DI | GCAATG | 1 cut(s) | 112 |
| BseDI | CCNNGG | 1 cut(s) | 27 |
| BseMI | GCAATG | 1 cut(s) | 112 |
| BseNI | ACTGG | 2 cut(s) | 18, 40 |
| BseXI | GCAGC | 1 cut(s) | 51 |
| BshFI | GGCC | 1 cut(s) | 32 |
| BsmAI | GTCTC | 1 cut(s) | 157 |
| BsnI | GGCC | 1 cut(s) | 32 |
| Bsp1286I | GDGCHC | 1 cut(s) | 236 |
| BspANI | GGCC | 1 cut(s) | 32 |
| BspQI | GCTCTTC | 1 cut(s) | 224 |
| BsrDI | GCAATG | 1 cut(s) | 112 |
| BsrI | ACTGG | 2 cut(s) | 18, 40 |
| BssECI | CCNNGG | 1 cut(s) | 27 |
| Bst6I | CTCTTC | 1 cut(s) | 224 |
| BstMAI | GTCTC | 1 cut(s) | 157 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 45 |
| BstV1I | GCAGC | 1 cut(s) | 51 |
| BsuRI | GGCC | 1 cut(s) | 32 |
| BtsIMutI | CAGTG | 2 cut(s) | 11, 33 |
| Cfr13I | GGNCC | 1 cut(s) | 192 |
| CviJI | RGCY | 6 cut(s) | 19, 26, 32, 48, 90, 234 |
| CviKI_1 | RGCY | 6 cut(s) | 19, 26, 32, 48, 90, 234 |
| EaeI | YGGCCR | 1 cut(s) | 30 |
| Eam1104I | CTCTTC | 1 cut(s) | 224 |
| EarI | CTCTTC | 1 cut(s) | 224 |
| Eco24I | GRGCYC | 1 cut(s) | 236 |
| Eco47I | GGWCC | 1 cut(s) | 192 |
| Eco57I | CTGAAG | 1 cut(s) | 70 |
| EcoT38I | GRGCYC | 1 cut(s) | 236 |
| FaiI | YATR | 4 cut(s) | 58, 60, 158, 265 |
| Fnu4HI | GCNGC | 1 cut(s) | 40 |
| FriOI | GRGCYC | 1 cut(s) | 236 |
| Fsp4HI | GCNGC | 1 cut(s) | 40 |
| FspBI | CTAG | 1 cut(s) | 134 |
| GluI | GCNGC | 1 cut(s) | 40 |
| HaeIII | GGCC | 1 cut(s) | 32 |
| HincII | GTYRAC | 1 cut(s) | 9 |
| HindII | GTYRAC | 1 cut(s) | 9 |
| HinfI | GANTC | 2 cut(s) | 138, 219 |
| Hpy166II | GTNNAC | 2 cut(s) | 9, 112 |
| Hpy188I | TCNGA | 1 cut(s) | 97 |
| Hpy188III | TCNNGA | 1 cut(s) | 190 |
| Hpy8I | GTNNAC | 2 cut(s) | 9, 112 |
| Hpy99I | CGWCG | 1 cut(s) | 149 |
| HpyAV | CCTTC | 1 cut(s) | 130 |
| HpyCH4V | TGCA | 2 cut(s) | 105, 126 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 45 |
| LguI | GCTCTTC | 1 cut(s) | 224 |
| LpnPI | CCDG | 5 cut(s) | 5, 21, 76, 175, 239 |
| Lsp1109I | GCAGC | 1 cut(s) | 51 |
| MaeI | CTAG | 1 cut(s) | 134 |
| MboII | GAAGA | 3 cut(s) | 176, 228, 241 |
| MhlI | GDGCHC | 1 cut(s) | 236 |
| MluCI | AATT | 1 cut(s) | 245 |
| MmeI | TCCRAC | 1 cut(s) | 75 |
| MnlI | CCTC | 4 cut(s) | 37, 205, 209, 253 |
| MseI | TTAA | 1 cut(s) | 248 |
| MspA1I | CMGCKG | 1 cut(s) | 90 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 45 |
| NmeAIII | GCCGAG | 1 cut(s) | 8 |
| PciSI | GCTCTTC | 1 cut(s) | 224 |
| PfeI | GAWTC | 2 cut(s) | 138, 219 |
| PkrI | GCNGC | 1 cut(s) | 41 |
| PspPI | GGNCC | 1 cut(s) | 192 |
| PvuII | CAGCTG | 1 cut(s) | 90 |
| SapI | GCTCTTC | 1 cut(s) | 224 |
| SaqAI | TTAA | 1 cut(s) | 248 |
| SatI | GCNGC | 1 cut(s) | 40 |
| Sau96I | GGNCC | 1 cut(s) | 192 |
| SduI | GDGCHC | 1 cut(s) | 236 |
| SetI | ASST | 3 cut(s) | 92, 122, 197 |
| SgeI | CNNG | 7 cut(s) | 26, 32, 40, 48, 103, 146, 202 |
| SinI | GGWCC | 1 cut(s) | 192 |
| Sse9I | AATT | 1 cut(s) | 245 |
| SspMI | CTAG | 1 cut(s) | 134 |
| TasI | AATT | 1 cut(s) | 245 |
| TfiI | GAWTC | 2 cut(s) | 138, 219 |
| Tru1I | TTAA | 1 cut(s) | 248 |
| Tru9I | TTAA | 1 cut(s) | 248 |
| TscAI | CASTG | 2 cut(s) | 18, 40 |
| TseI | GCWGC | 1 cut(s) | 39 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 133 |
| TspRI | CASTG | 2 cut(s) | 18, 40 |
| VpaK11BI | GGWCC | 1 cut(s) | 192 |
| XspI | CTAG | 1 cut(s) | 134 |