Rorug04G0170000

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010939
Physical Location & Seq
Forward (+)
29940679 .. 29942064
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0170000.1

Sequence Viewer

Length: 960 bp
ATGGGTTCTGGTTGTCAATACCAGATTCCTACCATAGATTTCTCAATCCATTCACTGGAAGTAGACCGAGGAACAGAAGAGTGGTACAGTTTGTGCAAGAGAGTTAGAGAGGCTTGTGAAAACAATGGTTTCTTTGAAATACTGTATGATAGGATACCTCTGCAGTTAAGAGCAGAGACCTTCTCTATGATAAGGCAACTCTTCAGCCTTCCTCTGGATACAAAGAAGAACTATTTTAGTTCGAGGCCTTATGGCGGTTACCTTGGACAGAATCCGAAACTTCCCTTGTTTGAGAGCTTTGGCCTTGAAGATCCCTCCAACTATGAATCCCTCAGAAGCTTCACACAACTCATGTGGCCTAATGGCCATGACAAGTTTTGGTACAACACTGTAATTTCTATGGTGAAGAAGTTGGATGAGCTGAAACATATGATTGAAGTGATGATTCTTGATAGTTATGGTTTGGGAGAGAAGTCAAAATCGATCATGGCATCTATGACACTGCTAAGGATAATGAAATACAGCCCACCTCTTTCTGGGGCATCCATGCAGGGACTCCATGCTCACACAGACAAAGCACTTAGCACAATCCTTTGTGATGATCAAGTTTCAGGGCTGGAAATCGAAACAAAGGATGGACAGTGGGTCAAGCTTTCTTTCTCTCCTACCTCCTTGGTCTTTGTCGTTGGAGATCTCCTTATGGCCTGGAGTAATGGCAGAATGCATCCTGCAAAGCATCGAGTGATGATGAGTGGAGAGAAGGAGCGATATTCTTTGGGACAATTTGTAGATCCAGTAGAAGGTACCATCATCAAATCACCAAAGGAGCTAGTAGATGAAGAACATCCCCGTATTCTTGAGGACTTTGACTATACGAAATTTAGCAAGTTCTTCTACTCAGAGGAAGGAAAGGCTGTCGACACAGAAATGCAGATTTTCGCATTTGCTGGGATTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

319

Amino Acids

36.53

Weight (kDa)

5.46

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 9 - 89 3.7e-13 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 171 - 265 1.4e-17 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010939)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06390 AT4G15610 AT4G15610
fragaria_vesca FvH4_4g17250
malus_domestica MD13G1173500.v1.1 MD16G1174700.v1.1
prunus_persica Prupe.1G141700_v2.0.a1 Prupe.1G141700_v2.0.a1
pyrus_communis pycom13g14910 pycom16g14660
rosa_chinensis RchiOBHm_Chr4g0421171
rosa_laevigata RLG00000007710
rosa_multiflora Rmu_sc0009290.1_g000005
rosa_roxburghii Rroxscaffold_5G00363470
rosa_rugosa Rorug04G0170000
rosa_samantha Rh4AG229700 Rh4BG232400 Rh4CG244000 Rh4DG228100
rosa_wichuraiana Rw4G020410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 803
AccB1I GGYRCC 1 cut(s) 803
AccB7I CCANNNNNTGG 1 cut(s) 55
AccI GTMKAC 2 cut(s) 63, 918
AciI CCGC 1 cut(s) 255
AclWI GGATC 2 cut(s) 305, 785
AcoI YGGCCR 1 cut(s) 364
AcsI RAATTY 1 cut(s) 878
AcuI CTGAAG 1 cut(s) 187
AfaI GTAC 3 cut(s) 86, 383, 805
AfiI CCNNNNNNNGG 5 cut(s) 55, 214, 254, 536, 800
AgsI TTSAA 3 cut(s) 137, 308, 437
AhdI GACNNNNNGTC 1 cut(s) 644
AjnI CCWGG 1 cut(s) 704
AluBI AGCT 5 cut(s) 297, 339, 421, 652, 829
AluI AGCT 5 cut(s) 297, 339, 421, 652, 829
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 2 cut(s) 305, 785
AoxI GGCC 5 cut(s) 245, 301, 356, 364, 702
ApoI RAATTY 1 cut(s) 878
Asp718I GGTACC 1 cut(s) 803
AsuHPI GGTGA 2 cut(s) 415, 810
BalI TGGCCA 1 cut(s) 366
BanI GGYRCC 1 cut(s) 803
BccI CCATC 2 cut(s) 629, 815
BciT130I CCWGG 1 cut(s) 706
BciVI GTATCC 2 cut(s) 147, 211
BclI TGATCA 1 cut(s) 601
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 1 cut(s) 830
BfmI CTRYAG 1 cut(s) 161
BfuI GTATCC 2 cut(s) 147, 211
BglII AGATCT 1 cut(s) 691
Bme1390I CCNGG 1 cut(s) 706
BmeRI GACNNNNNGTC 1 cut(s) 644
BmiI GGNNCC 1 cut(s) 805
BmrFI CCNGG 1 cut(s) 706
BmsI GCATC 4 cut(s) 500, 551, 733, 745
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpmI CTGGAG 1 cut(s) 727
Bpu10I CCTNAGC 1 cut(s) 506
BpuEI CTTGAG 1 cut(s) 878
Bsa29I ATCGAT 1 cut(s) 482
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 3 cut(s) 67, 262, 672
Bsc4I CCNNNNNNNGG 5 cut(s) 55, 214, 254, 536, 800
Bse1I ACTGG 2 cut(s) 60, 794
BseBI CCWGG 1 cut(s) 706
BseCI ATCGAT 1 cut(s) 482
BseDI CCNNGG 3 cut(s) 67, 262, 672
BseGI GGATG 5 cut(s) 421, 542, 640, 724, 844
BseLI CCNNNNNNNGG 5 cut(s) 55, 214, 254, 536, 800
BseMII CTCAG 2 cut(s) 346, 912
BseNI ACTGG 2 cut(s) 60, 794
BseYI CCCAGC 1 cut(s) 947
BshFI GGCC 5 cut(s) 247, 303, 358, 366, 704
BshNI GGYRCC 1 cut(s) 803
BshVI ATCGAT 1 cut(s) 482
BslFI GGGAC 2 cut(s) 567, 792
BslI CCNNNNNNNGG 5 cut(s) 55, 214, 254, 536, 800
BsmAI GTCTC 1 cut(s) 170
BsmFI GGGAC 2 cut(s) 567, 792
BsmI GAATGC 1 cut(s) 726
BsnI GGCC 5 cut(s) 247, 303, 358, 366, 704
Bso31I GGTCTC 1 cut(s) 170
Bsp143I GATC 5 cut(s) 310, 483, 601, 691, 790
BspACI CCGC 1 cut(s) 255
BspANI GGCC 5 cut(s) 247, 303, 358, 366, 704
BspCNI CTCAG 2 cut(s) 345, 911
BspDI ATCGAT 1 cut(s) 482
BspLI GGNNCC 1 cut(s) 805
BspMAI CTGCAG 1 cut(s) 165
BspPI GGATC 2 cut(s) 305, 785
BspT107I GGYRCC 1 cut(s) 803
BspTNI GGTCTC 1 cut(s) 170
BsrI ACTGG 2 cut(s) 60, 794
BssECI CCNNGG 3 cut(s) 67, 262, 672
BssMI GATC 5 cut(s) 310, 483, 601, 691, 790
BssT1I CCWWGG 2 cut(s) 262, 672
Bst2UI CCWGG 1 cut(s) 706
Bst4CI ACNGT 4 cut(s) 89, 144, 391, 642
Bst6I CTCTTC 2 cut(s) 72, 206
BstDEI CTNAG 4 cut(s) 332, 506, 581, 898
BstEII GGTNACC 1 cut(s) 257
BstF5I GGATG 5 cut(s) 421, 542, 640, 724, 844
BstKTI GATC 5 cut(s) 313, 486, 604, 694, 793
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 5 cut(s) 310, 483, 601, 691, 790
BstNI CCWGG 1 cut(s) 706
BstPI GGTNACC 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 704
BstSFI CTRYAG 1 cut(s) 161
BstX2I RGATCY 3 cut(s) 310, 691, 790
BstYI RGATCY 3 cut(s) 310, 691, 790
Bsu15I ATCGAT 1 cut(s) 482
BsuI GTATCC 2 cut(s) 147, 211
BsuRI GGCC 5 cut(s) 247, 303, 358, 366, 704
BsuTUI ATCGAT 1 cut(s) 482
BtsCI GGATG 5 cut(s) 421, 542, 640, 724, 844
BtsI GCAGTG 1 cut(s) 500
BtsIMutI CAGTG 4 cut(s) 53, 387, 500, 647
ClaI ATCGAT 1 cut(s) 482
Csp6I GTAC 3 cut(s) 85, 382, 804
CspCI CAANNNNNGTGG 2 cut(s) 335, 370
CviAII CATG 5 cut(s) 352, 368, 487, 547, 560
CviQI GTAC 3 cut(s) 85, 382, 804
DdeI CTNAG 4 cut(s) 332, 506, 581, 898
DpnI GATC 5 cut(s) 312, 485, 603, 693, 792
DpnII GATC 5 cut(s) 310, 483, 601, 691, 790
DriI GACNNNNNGTC 1 cut(s) 644
EaeI YGGCCR 1 cut(s) 364
Eam1104I CTCTTC 2 cut(s) 72, 206
Eam1105I GACNNNNNGTC 1 cut(s) 644
EarI CTCTTC 2 cut(s) 72, 206
Eco130I CCWWGG 2 cut(s) 262, 672
Eco147I AGGCCT 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 187
Eco91I GGTNACC 1 cut(s) 257
EcoO65I GGTNACC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 704
EcoT14I CCWWGG 2 cut(s) 262, 672
EcoT22I ATGCAT 1 cut(s) 726
ErhI CCWWGG 2 cut(s) 262, 672
FaeI CATG 5 cut(s) 355, 371, 490, 550, 563
FaqI GGGAC 2 cut(s) 567, 792
FatI CATG 5 cut(s) 351, 367, 486, 546, 559
FauNDI CATATG 1 cut(s) 429
FbaI TGATCA 1 cut(s) 601
FblI GTMKAC 2 cut(s) 63, 918
FokI GGATG 5 cut(s) 428, 529, 647, 711, 831
FspBI CTAG 1 cut(s) 830
GsaI CCCAGC 1 cut(s) 951
GsuI CTGGAG 1 cut(s) 727
HaeIII GGCC 5 cut(s) 247, 303, 358, 366, 704
Hin1II CATG 5 cut(s) 355, 371, 490, 550, 563
HincII GTYRAC 1 cut(s) 919
HindII GTYRAC 1 cut(s) 919
HindIII AAGCTT 2 cut(s) 337, 650
HinfI GANTC 5 cut(s) 25, 271, 326, 445, 555
HphI GGTGA 2 cut(s) 415, 810
Hpy166II GTNNAC 2 cut(s) 64, 919
Hpy188I TCNGA 3 cut(s) 276, 335, 901
Hpy188III TCNNGA 3 cut(s) 215, 449, 857
Hpy8I GTNNAC 2 cut(s) 64, 919
HpyAV CCTTC 5 cut(s) 190, 218, 754, 794, 899
HpyCH4III ACNGT 4 cut(s) 89, 144, 391, 642
HpyCH4V TGCA 6 cut(s) 96, 163, 550, 724, 731, 931
HpyF3I CTNAG 4 cut(s) 332, 506, 581, 898
Hsp92II CATG 5 cut(s) 355, 371, 490, 550, 563
KpnI GGTACC 1 cut(s) 807
Ksp22I TGATCA 1 cut(s) 601
Kzo9I GATC 5 cut(s) 310, 483, 601, 691, 790
LmnI GCTCC 2 cut(s) 763, 826
LweI GCATC 4 cut(s) 500, 551, 733, 745
MaeI CTAG 1 cut(s) 830
MaeIII GTNAC 1 cut(s) 257
MalI GATC 5 cut(s) 312, 485, 603, 693, 792
MboI GATC 5 cut(s) 310, 483, 601, 691, 790
MboII GAAGA 7 cut(s) 89, 193, 238, 320, 418, 851, 883
MflI RGATCY 3 cut(s) 310, 691, 790
MlsI TGGCCA 1 cut(s) 366
MluCI AATT 3 cut(s) 393, 782, 878
MluNI TGGCCA 1 cut(s) 366
MlyI GAGTC 1 cut(s) 549
MmeI TCCRAC 3 cut(s) 342, 393, 667
Mox20I TGGCCA 1 cut(s) 366
Mph1103I ATGCAT 1 cut(s) 726
MscI TGGCCA 1 cut(s) 366
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 926
Msp20I TGGCCA 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 706
Mva1269I GAATGC 1 cut(s) 726
MvaI CCWGG 1 cut(s) 706
NdeI CATATG 1 cut(s) 429
NdeII GATC 5 cut(s) 310, 483, 601, 691, 790
NlaIII CATG 5 cut(s) 355, 371, 490, 550, 563
NlaIV GGNNCC 1 cut(s) 805
NsiI ATGCAT 1 cut(s) 726
PceI AGGCCT 1 cut(s) 247
PctI GAATGC 1 cut(s) 726
PfeI GAWTC 4 cut(s) 25, 271, 326, 445
PflMI CCANNNNNTGG 1 cut(s) 55
PleI GAGTC 1 cut(s) 549
PpsI GAGTC 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 704
PspEI GGTNACC 1 cut(s) 257
PspFI CCCAGC 1 cut(s) 947
PspGI CCWGG 1 cut(s) 704
PspN4I GGNNCC 1 cut(s) 805
PstI CTGCAG 1 cut(s) 165
PsuI RGATCY 3 cut(s) 310, 691, 790
RsaI GTAC 3 cut(s) 86, 383, 805
RsaNI GTAC 3 cut(s) 85, 382, 804
RseI CAYNNNNRTG 1 cut(s) 926
SalI GTCGAC 1 cut(s) 917
SaqAI TTAA 1 cut(s) 167
Sau3AI GATC 5 cut(s) 310, 483, 601, 691, 790
SchI GAGTC 1 cut(s) 549
ScrFI CCNGG 1 cut(s) 706
SfaNI GCATC 4 cut(s) 500, 551, 733, 745
SfcI CTRYAG 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 926
SmlI CTYRAG 1 cut(s) 857
SmoI CTYRAG 1 cut(s) 857
Sse9I AATT 3 cut(s) 393, 782, 878
SseBI AGGCCT 1 cut(s) 247
SsiI CCGC 1 cut(s) 255
SspMI CTAG 1 cut(s) 830
StuI AGGCCT 1 cut(s) 247
StyD4I CCNGG 1 cut(s) 704
StyI CCWWGG 2 cut(s) 262, 672
TaaI ACNGT 4 cut(s) 89, 144, 391, 642
TaqI TCGA 5 cut(s) 242, 482, 624, 739, 918
TaqII GACCGA 1 cut(s) 81
TasI AATT 3 cut(s) 393, 782, 878
TfiI GAWTC 4 cut(s) 25, 271, 326, 445
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 4 cut(s) 60, 394, 507, 647
TspDTI ATGAA 3 cut(s) 339, 530, 852
TspRI CASTG 4 cut(s) 60, 394, 507, 647
Van91I CCANNNNNTGG 1 cut(s) 55
XapI RAATTY 1 cut(s) 878
XmiI GTMKAC 2 cut(s) 63, 918
XspI CTAG 1 cut(s) 830
Zsp2I ATGCAT 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.