Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010939

Physical Location & Seq

Genomic Coordinates Forward (+)

10784990 .. 10786754

Gene Structure 1765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g14910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGAACCACGGATAAGCCAGCTGACCCGGAAACCGCCACCAAGGTAGTCCCACCGCCATCAAAGGAGGAGTCCGAAGCCACGCCTCCTTCCCCTAAACCCGACTACCTCTTTCTAGCTGATGTGGCTCTCAGGTTCTTAGTGTTCGCAGCATCACTGACAAGTGTGTTGGTCATGGTCACTAGCAAGCAAACAGTATTCCGAGGTCCTTTCCCAGTTAAGGCCAAGTTTAATCACTCTCCTGCCTTCATATACTTTGTGGCGGCTTTATCGGTTGCAGGCCTCTATGCTCTTCTTACAACACTAGCATCCATTTCAGTAATCTGGAAGCCAATTTGCCCACCAAAGTTGTTGCTCCATTTTGCATTTCTTGATGTGCTGATACTCGGTTTGGTTGCCTCAGCCACGGGCACAGCCGGGGCTGTTGCTTATATCGGATACAAGGGTAATGAACATGTGATGTGGCAGAAGGTGTGCTCGGCTTTTGACAAGTACTGTAAGCACATAGCAGGCTCCCTCGCTACCTCGCTGGTAGCCTCAGTCTTGCTGGTTCTTCTGGTCTGGCTCTCAACTTTCACCCTTCACAAAAAAATTCGCCAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

202

Amino Acids

21.68

Weight (kDa)

9.24

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06390 AT4G15610 AT4G15610
fragaria_vesca	FvH4_4g17250
malus_domestica	MD13G1173500.v1.1 MD16G1174700.v1.1
prunus_persica	Prupe.1G141700_v2.0.a1 Prupe.1G141700_v2.0.a1
pyrus_communis	pycom13g14910 pycom16g14660
rosa_chinensis	RchiOBHm_Chr4g0421171
rosa_laevigata	RLG00000007710
rosa_multiflora	Rmu_sc0009290.1_g000005
rosa_roxburghii	Rroxscaffold_5G00363470
rosa_rugosa	Rorug04G0170000
rosa_samantha	Rh4AG229700 Rh4BG232400 Rh4CG244000 Rh4DG228100
rosa_wichuraiana	Rw4G020410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	36, 56, 263
AcsI	RAATTY	1 cut(s)	591
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	220
AflIII	ACRYGT	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	2 cut(s)	23, 119
AluI	AGCT	2 cut(s)	23, 119
Alw21I	GWGCWC	1 cut(s)	479
AoxI	GGCC	2 cut(s)	222, 280
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	591
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	2 cut(s)	29, 418
AsuHPI	GGTGA	1 cut(s)	568
AvaII	GGWCC	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	413
BaeI	ACNNNNGTAYC	2 cut(s)	430, 463
Bbv12I	GWGCWC	1 cut(s)	479
BbvCI	CCTCAGC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	599
BciVI	GTATCC	1 cut(s)	431
BcnI	CCSGG	2 cut(s)	29, 418
BfaI	CTAG	3 cut(s)	116, 183, 305
BfuI	GTATCC	1 cut(s)	431
BisI	GCNGC	2 cut(s)	150, 264
BlsI	GCNGC	2 cut(s)	151, 265
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	3 cut(s)	29, 418, 599
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	2 cut(s)	7, 514
BmrFI	CCNGG	3 cut(s)	29, 418, 599
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	2 cut(s)	161, 317
BmuI	ACTGGG	1 cut(s)	209
Bpu10I	CCTNAGC	1 cut(s)	400
BpuMI	CCSGG	2 cut(s)	29, 418
BsaJI	CCNNGG	5 cut(s)	9, 42, 202, 405, 417
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	5 cut(s)	9, 42, 202, 405, 417
BseGI	GGATG	1 cut(s)	308
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMII	CTCAG	3 cut(s)	145, 414, 552
BseNI	ACTGG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	161
BshFI	GGCC	2 cut(s)	224, 282
BsiHKAI	GWGCWC	1 cut(s)	479
BsiSI	CCGG	2 cut(s)	29, 417
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	224, 282
Bsp1286I	GDGCHC	2 cut(s)	413, 479
BspACI	CCGC	3 cut(s)	36, 56, 263
BspANI	GGCC	2 cut(s)	224, 282
BspCNI	CTCAG	3 cut(s)	144, 413, 551
BspLI	GGNNCC	2 cut(s)	7, 514
BspQI	GCTCTTC	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	215
BssECI	CCNNGG	5 cut(s)	9, 42, 202, 405, 417
BssT1I	CCWWGG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	2 cut(s)	196, 497
Bst6I	CTCTTC	1 cut(s)	297
BstC8I	GCNNGC	4 cut(s)	21, 188, 280, 511
BstDEI	CTNAG	4 cut(s)	131, 139, 400, 538
BstDSI	CCRYGG	2 cut(s)	9, 405
BstF5I	GGATG	1 cut(s)	308
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	3 cut(s)	27, 416, 597
BstSLI	GKGCMC	1 cut(s)	413
BstV1I	GCAGC	1 cut(s)	161
BsuI	GTATCC	1 cut(s)	431
BsuRI	GGCC	2 cut(s)	224, 282
BtgI	CCRYGG	2 cut(s)	9, 405
BtsCI	GGATG	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	4 cut(s)	21, 188, 280, 511
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	493
CspCI	CAANNNNNGTGG	2 cut(s)	330, 365
CviAII	CATG	2 cut(s)	175, 455
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	4 cut(s)	131, 139, 400, 538
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	42
Eco147I	AGGCCT	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	2 cut(s)	178, 458
FaiI	YATR	7 cut(s)	176, 251, 253, 288, 432, 456, 506
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	2 cut(s)	174, 454
Fnu4HI	GCNGC	2 cut(s)	150, 264
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	2 cut(s)	150, 264
FspBI	CTAG	3 cut(s)	116, 183, 305
GluI	GCNGC	2 cut(s)	150, 264
HaeIII	GGCC	2 cut(s)	224, 282
HapII	CCGG	2 cut(s)	29, 417
Hin1II	CATG	2 cut(s)	178, 458
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	2 cut(s)	29, 417
HphI	GGTGA	1 cut(s)	568
Hpy188I	TCNGA	3 cut(s)	76, 203, 437
Hpy188III	TCNNGA	2 cut(s)	325, 371
HpyAV	CCTTC	4 cut(s)	99, 256, 463, 590
HpyCH4III	ACNGT	2 cut(s)	196, 497
HpyCH4V	TGCA	2 cut(s)	278, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	4 cut(s)	131, 139, 400, 538
Hsp92II	CATG	2 cut(s)	178, 458
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	360, 518
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	2 cut(s)	161, 317
MaeI	CTAG	3 cut(s)	116, 183, 305
MaeIII	GTNAC	1 cut(s)	178
MboII	GAAGA	2 cut(s)	284, 545
MhlI	GDGCHC	2 cut(s)	413, 479
MluCI	AATT	2 cut(s)	333, 591
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	9 cut(s)	61, 96, 119, 197, 293, 409, 527, 535, 547
MseI	TTAA	2 cut(s)	219, 231
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	2 cut(s)	29, 417
MspR9I	CCNGG	3 cut(s)	29, 418, 599
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	2 cut(s)	29, 418
NlaIII	CATG	2 cut(s)	178, 458
NlaIV	GGNNCC	2 cut(s)	7, 514
NmeAIII	GCCGAG	1 cut(s)	458
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	458
PceI	AGGCCT	1 cut(s)	282
PciI	ACATGT	1 cut(s)	454
PciSI	GCTCTTC	1 cut(s)	297
PkrI	GCNGC	2 cut(s)	151, 265
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PpuMI	RGGWCCY	1 cut(s)	206
PscI	ACATGT	1 cut(s)	454
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	2 cut(s)	7, 514
PspPI	GGNCC	1 cut(s)	206
PspPPI	RGGWCCY	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	219, 231
SatI	GCNGC	2 cut(s)	150, 264
Sau96I	GGNCC	1 cut(s)	206
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	3 cut(s)	29, 418, 599
SduI	GDGCHC	2 cut(s)	413, 479
SetI	ASST	8 cut(s)	25, 48, 111, 121, 137, 208, 474, 527
SfaNI	GCATC	2 cut(s)	161, 317
SinI	GGWCC	1 cut(s)	206
Sse9I	AATT	2 cut(s)	333, 591
SseBI	AGGCCT	1 cut(s)	282
SsiI	CCGC	3 cut(s)	36, 56, 263
SspMI	CTAG	3 cut(s)	116, 183, 305
StuI	AGGCCT	1 cut(s)	282
StyD4I	CCNGG	3 cut(s)	27, 416, 597
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	2 cut(s)	196, 497
TasI	AATT	2 cut(s)	333, 591
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	219, 231
Tru9I	TTAA	2 cut(s)	219, 231
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	238, 465
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	591
XceI	RCATGY	1 cut(s)	458
XspI	CTAG	3 cut(s)	116, 183, 305
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.