Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009290.1

Orthogroup ID

OG0010939

Physical Location & Seq

Genomic Coordinates Reverse (-)

33389 .. 35132

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009290.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atggcatcgacggataagccagctaacccggaaaccggtaaggaagttccaccaccaaaggcctcgtacggagacacacctcctcctcctcctcctccaaaaacagttgacttgtttgcagtcgatgtggcacttaggttattggtgtttgcagcatcactaacaagtgtattggtcatggtaactagcaagcagacggtattccgaggccctatcccgttaaaagccaagtttgatcactctcctgccctcatatactttgtagtggcactatcagttgcaggcctctatggtattcttactacactagcatccctttcagtcatctggaagccaatattctcaaccaagttcttgctccactttgcattttgggatgtgctgatactgggtctagtggcctctgccacgggtaccgccgggggtgttgcgtatattggatacaagggcaatgaacatttgcagtggaacaaggtttgctctatttttgacaagtactgcaaacatctagcaggctccctcgctacgtcgttgtttgcttcggttttgctggtccttctggtgtggctgtcaactttctcactccacaagaaaattcccaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

201

Amino Acids

21.64

Weight (kDa)

9.52

Isoelectric Point (pI)

24.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06390 AT4G15610 AT4G15610
fragaria_vesca	FvH4_4g17250
malus_domestica	MD13G1173500.v1.1 MD16G1174700.v1.1
prunus_persica	Prupe.1G141700_v2.0.a1 Prupe.1G141700_v2.0.a1
pyrus_communis	pycom13g14910 pycom16g14660
rosa_chinensis	RchiOBHm_Chr4g0421171
rosa_laevigata	RLG00000007710
rosa_multiflora	Rmu_sc0009290.1_g000005
rosa_roxburghii	Rroxscaffold_5G00363470
rosa_rugosa	Rorug04G0170000
rosa_samantha	Rh4AG229700 Rh4BG232400 Rh4CG244000 Rh4DG228100
rosa_wichuraiana	Rw4G020410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	413
AciI	CCGC	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	594
AfaI	GTAC	3 cut(s)	68, 415, 497
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgeI	ACCGGT	1 cut(s)	35
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	66
AoxI	GGCC	4 cut(s)	60, 208, 283, 399
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	594
AsiGI	ACCGGT	1 cut(s)	35
Asp718I	GGTACC	1 cut(s)	413
AspS9I	GGNCC	2 cut(s)	209, 553
AsuC2I	CCSGG	2 cut(s)	29, 421
AvaII	GGWCC	1 cut(s)	553
BanI	GGYRCC	1 cut(s)	413
BbvI	GCAGC	1 cut(s)	164
BciVI	GTATCC	1 cut(s)	434
BclI	TGATCA	1 cut(s)	235
BcnI	CCSGG	2 cut(s)	29, 421
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	4 cut(s)	186, 308, 395, 509
BfuI	GTATCC	1 cut(s)	434
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
BmcAI	AGTACT	1 cut(s)	497
Bme1390I	CCNGG	2 cut(s)	29, 421
Bme18I	GGWCC	1 cut(s)	553
BmgT120I	GGNCC	2 cut(s)	209, 553
BmiI	GGNNCC	2 cut(s)	415, 517
BmrFI	CCNGG	2 cut(s)	29, 421
BmrI	ACTGGG	1 cut(s)	398
BmsI	GCATC	3 cut(s)	14, 164, 320
BmuI	ACTGGG	1 cut(s)	398
BpuMI	CCSGG	2 cut(s)	29, 421
BsaJI	CCNNGG	3 cut(s)	205, 408, 420
BsaWI	WCCGGW	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	393
Bse3DI	GCAATG	1 cut(s)	457
BseDI	CCNNGG	3 cut(s)	205, 408, 420
BseGI	GGATG	2 cut(s)	311, 382
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMI	GCAATG	1 cut(s)	457
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	5 cut(s)	72, 75, 78, 81, 84
BseXI	GCAGC	1 cut(s)	164
BshFI	GGCC	4 cut(s)	62, 210, 285, 401
BshNI	GGYRCC	1 cut(s)	413
BshTI	ACCGGT	1 cut(s)	35
BsiSI	CCGG	3 cut(s)	29, 36, 420
BsiWI	CGTACG	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	4 cut(s)	62, 210, 285, 401
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	4 cut(s)	62, 210, 285, 401
BspLI	GGNNCC	2 cut(s)	415, 517
BspT107I	GGYRCC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	457
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	393
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	205, 408, 420
BssMI	GATC	1 cut(s)	235
Bst4CI	ACNGT	2 cut(s)	106, 199
BstC8I	GCNNGC	4 cut(s)	21, 191, 283, 514
BstDEI	CTNAG	1 cut(s)	134
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	2 cut(s)	311, 382
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	27, 419
BstV1I	GCAGC	1 cut(s)	164
BsuI	GTATCC	1 cut(s)	434
BsuRI	GGCC	4 cut(s)	62, 210, 285, 401
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	2 cut(s)	311, 382
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	1 cut(s)	470
Cac8I	GCNNGC	4 cut(s)	21, 191, 283, 514
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	209, 553
Csp6I	GTAC	3 cut(s)	67, 414, 496
CspAI	ACCGGT	1 cut(s)	35
CviAII	CATG	1 cut(s)	178
CviQI	GTAC	3 cut(s)	67, 414, 496
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eco147I	AGGCCT	2 cut(s)	62, 285
Eco47I	GGWCC	1 cut(s)	553
EcoO109I	RGGNCCY	1 cut(s)	209
FaeI	CATG	1 cut(s)	181
FaiI	YATR	5 cut(s)	179, 254, 256, 291, 435
FatI	CATG	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	2 cut(s)	298, 389
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	4 cut(s)	186, 308, 395, 509
GluI	GCNGC	1 cut(s)	153
HaeIII	GGCC	4 cut(s)	62, 210, 285, 401
HapII	CCGG	3 cut(s)	29, 36, 420
Hin1II	CATG	1 cut(s)	181
HincII	GTYRAC	2 cut(s)	109, 573
HindII	GTYRAC	2 cut(s)	109, 573
HpaII	CCGG	3 cut(s)	29, 36, 420
Hpy166II	GTNNAC	2 cut(s)	109, 573
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	2 cut(s)	109, 573
Hpy99I	CGWCG	2 cut(s)	13, 532
HpyAV	CCTTC	1 cut(s)	566
HpyCH4III	ACNGT	2 cut(s)	106, 199
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	6 cut(s)	119, 152, 281, 368, 463, 501
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	1 cut(s)	181
KpnI	GGTACC	1 cut(s)	417
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	2 cut(s)	363, 521
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	3 cut(s)	14, 164, 320
MaeI	CTAG	4 cut(s)	186, 308, 395, 509
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MluCI	AATT	1 cut(s)	594
MseI	TTAA	1 cut(s)	221
MspI	CCGG	3 cut(s)	29, 36, 420
MspR9I	CCNGG	2 cut(s)	29, 421
NciI	CCSGG	2 cut(s)	29, 421
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	2 cut(s)	415, 517
PceI	AGGCCT	2 cut(s)	62, 285
Pfl23II	CGTACG	1 cut(s)	66
PinAI	ACCGGT	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	154
PspLI	CGTACG	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	415, 517
PspPI	GGNCC	2 cut(s)	209, 553
RsaI	GTAC	3 cut(s)	68, 415, 497
RsaNI	GTAC	3 cut(s)	67, 414, 496
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	2 cut(s)	209, 553
ScaI	AGTACT	1 cut(s)	497
ScrFI	CCNGG	2 cut(s)	29, 421
SetI	ASST	5 cut(s)	25, 82, 140, 477, 530
SfaNI	GCATC	3 cut(s)	14, 164, 320
SinI	GGWCC	1 cut(s)	553
Sse9I	AATT	1 cut(s)	594
SseBI	AGGCCT	2 cut(s)	62, 285
SsiI	CCGC	1 cut(s)	417
SspI	AATATT	1 cut(s)	339
SspMI	CTAG	4 cut(s)	186, 308, 395, 509
StuI	AGGCCT	2 cut(s)	62, 285
StyD4I	CCNGG	2 cut(s)	27, 419
TaaI	ACNGT	2 cut(s)	106, 199
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	2 cut(s)	8, 123
TasI	AATT	1 cut(s)	594
TatI	WGTACW	1 cut(s)	495
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	1 cut(s)	470
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	1 cut(s)	468
TspGWI	ACGGA	2 cut(s)	26, 84
TspRI	CASTG	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	553
XapI	RAATTY	1 cut(s)	594
XspI	CTAG	4 cut(s)	186, 308, 395, 509
ZrmI	AGTACT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.