Prupe.1G141700_v2.0.a1

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010939
Physical Location & Seq
Forward (+)
11138777 .. 11141496
2720 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G141700.1

Sequence Viewer

Length: 603 bp
ATGGGATCTACAGATAAGCCGGCTGACCTGGAAACCGCCAAGGAAGTCCCGCCACCACCAAAAGGGGCGGCCTACGGGTCTACGCCTCCTCCCCCTAAACACGATTACTTCTTTGTAGTTGATGTGGTTCTCAGGTTCCTAGTGTTTGCAGCATCACTTACAAGTGTGTTGGTCATTGTCATTAGCAAGCAAACAGTTCATCTAGGTCCTAGAATATCGGTGGCCAAGTTTAATCACTCTCCGGCCTTCATATACTTTGTGGCGGCACTATCAGTTGCAGGCCTCTACGCCATTCTTACTACGCTAGCATCCCTTTCAGTCATCTGGAAGCCAATCCTCTCAACAAAGTTCTTGCTTCATTTTGTATTTTTGGATGTGCTAGTATTGGGTCTGGTAGCCTCGGCCACTGGCACAGCCGGGGGTGTTGCATATATCGGATACAAGGGCAATGAACATACGCAGTGGCAGAAAGTGTGCTCTACTTTTGATAAGTTCTGTCAACACGTTGTAGGCGCTCTGGCTACCTCATTGTTTGCCTCAGTTTTGCTTGTCCTTCTGGTCTGGCTCTCCACTTTCACTCTCCACCGAAAAATTCCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

201

Amino Acids

21.58

Weight (kDa)

9.49

Isoelectric Point (pI)

18.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010939)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06390 AT4G15610 AT4G15610
fragaria_vesca FvH4_4g17250
malus_domestica MD13G1173500.v1.1 MD16G1174700.v1.1
prunus_persica Prupe.1G141700_v2.0.a1 Prupe.1G141700_v2.0.a1
pyrus_communis pycom13g14910 pycom16g14660
rosa_chinensis RchiOBHm_Chr4g0421171
rosa_laevigata RLG00000007710
rosa_multiflora Rmu_sc0009290.1_g000005
rosa_roxburghii Rroxscaffold_5G00363470
rosa_rugosa Rorug04G0170000
rosa_samantha Rh4AG229700 Rh4BG232400 Rh4CG244000 Rh4DG228100
rosa_wichuraiana Rw4G020410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 80
AciI CCGC 4 cut(s) 36, 50, 68, 263
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 2 cut(s) 222, 402
AcsI RAATTY 1 cut(s) 591
AfiI CCNNNNNNNGG 1 cut(s) 62
AflIII ACRYGT 1 cut(s) 502
AjnI CCWGG 1 cut(s) 27
Alw21I GWGCWC 1 cut(s) 479
AlwI GGATC 1 cut(s) 13
AoxI GGCC 5 cut(s) 69, 222, 243, 280, 402
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 591
AspLEI GCGC 1 cut(s) 515
AspS9I GGNCC 1 cut(s) 206
AsuC2I CCSGG 1 cut(s) 418
AsuNHI GCTAGC 1 cut(s) 304
AvaII GGWCC 1 cut(s) 206
BalI TGGCCA 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 479
BbvI GCAGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 29
BciVI GTATCC 1 cut(s) 431
BcnI CCSGG 1 cut(s) 418
BfaI CTAG 5 cut(s) 140, 203, 210, 305, 380
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 516
BfuI GTATCC 1 cut(s) 431
BisI GCNGC 3 cut(s) 69, 150, 264
BlsI GCNGC 3 cut(s) 70, 151, 265
Bme1390I CCNGG 2 cut(s) 29, 418
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 2 cut(s) 29, 418
BmsI GCATC 2 cut(s) 161, 317
BmtI GCTAGC 1 cut(s) 308
BpuMI CCSGG 1 cut(s) 418
BsaJI CCNNGG 3 cut(s) 39, 399, 417
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 412
Bse3DI GCAATG 1 cut(s) 454
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 3 cut(s) 39, 399, 417
BseGI GGATG 2 cut(s) 308, 379
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 454
BseMII CTCAG 2 cut(s) 145, 552
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 161
BshFI GGCC 5 cut(s) 71, 224, 245, 282, 404
BsiHKAI GWGCWC 1 cut(s) 479
BsiSI CCGG 3 cut(s) 20, 242, 417
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 32
BsnI GGCC 5 cut(s) 71, 224, 245, 282, 404
Bsp1286I GDGCHC 1 cut(s) 479
Bsp143I GATC 1 cut(s) 5
BspACI CCGC 4 cut(s) 36, 50, 68, 263
BspANI GGCC 5 cut(s) 71, 224, 245, 282, 404
BspCNI CTCAG 2 cut(s) 144, 551
BspLI GGNNCC 1 cut(s) 137
BspOI GCTAGC 1 cut(s) 308
BspPI GGATC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 454
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 1 cut(s) 412
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 3 cut(s) 39, 399, 417
BssMI GATC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 196
BstC8I GCNNGC 4 cut(s) 21, 188, 280, 306
BstDEI CTNAG 2 cut(s) 131, 538
BstF5I GGATG 2 cut(s) 308, 379
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 1 cut(s) 8
BstMBI GATC 1 cut(s) 5
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 2 cut(s) 27, 416
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BsuI GTATCC 1 cut(s) 431
BsuRI GGCC 5 cut(s) 71, 224, 245, 282, 404
BtsCI GGATG 2 cut(s) 308, 379
BtsI GCAGTG 1 cut(s) 467
BtsIMutI CAGTG 2 cut(s) 405, 467
Cac8I GCNNGC 4 cut(s) 21, 188, 280, 306
CfoI GCGC 1 cut(s) 515
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 206
DdeI CTNAG 2 cut(s) 131, 538
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
EaeI YGGCCR 2 cut(s) 222, 402
Eco130I CCWWGG 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 206
EcoO109I RGGNCCY 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaiI YATR 5 cut(s) 251, 253, 430, 432, 456
FaqI GGGAC 1 cut(s) 32
FauI CCCGC 1 cut(s) 57
FblI GTMKAC 1 cut(s) 80
Fnu4HI GCNGC 3 cut(s) 69, 150, 264
FokI GGATG 2 cut(s) 295, 386
Fsp4HI GCNGC 3 cut(s) 69, 150, 264
FspBI CTAG 5 cut(s) 140, 203, 210, 305, 380
GlaI GCGC 1 cut(s) 514
GluI GCNGC 3 cut(s) 69, 150, 264
HaeII RGCGCY 1 cut(s) 516
HaeIII GGCC 5 cut(s) 71, 224, 245, 282, 404
HapII CCGG 3 cut(s) 20, 242, 417
HhaI GCGC 1 cut(s) 515
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HincII GTYRAC 1 cut(s) 500
HindII GTYRAC 1 cut(s) 500
HpaII CCGG 3 cut(s) 20, 242, 417
Hpy166II GTNNAC 2 cut(s) 81, 500
Hpy188I TCNGA 1 cut(s) 437
Hpy188III TCNNGA 1 cut(s) 325
Hpy8I GTNNAC 2 cut(s) 81, 500
HpyAV CCTTC 2 cut(s) 256, 563
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 3 cut(s) 149, 278, 428
HpyF3I CTNAG 2 cut(s) 131, 538
HpySE526I ACGT 1 cut(s) 504
HspAI GCGC 1 cut(s) 513
KroI GCCGGC 1 cut(s) 19
KroNI GCCGGC 1 cut(s) 21
Kzo9I GATC 1 cut(s) 5
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 2 cut(s) 161, 317
MaeI CTAG 5 cut(s) 140, 203, 210, 305, 380
MaeII ACGT 1 cut(s) 504
MalI GATC 1 cut(s) 7
MboI GATC 1 cut(s) 5
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 479
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 1 cut(s) 591
MluNI TGGCCA 1 cut(s) 224
MnlI CCTC 7 cut(s) 96, 99, 293, 347, 409, 535, 547
Mox20I TGGCCA 1 cut(s) 224
MroNI GCCGGC 1 cut(s) 19
MscI TGGCCA 1 cut(s) 224
MseI TTAA 1 cut(s) 231
Msp20I TGGCCA 1 cut(s) 224
MspI CCGG 3 cut(s) 20, 242, 417
MspR9I CCNGG 2 cut(s) 29, 418
MvaI CCWGG 1 cut(s) 29
NaeI GCCGGC 1 cut(s) 21
NciI CCSGG 1 cut(s) 418
NdeII GATC 1 cut(s) 5
NgoMIV GCCGGC 1 cut(s) 19
NheI GCTAGC 1 cut(s) 304
NlaIV GGNNCC 1 cut(s) 137
NmeAIII GCCGAG 1 cut(s) 380
PceI AGGCCT 1 cut(s) 282
PdiI GCCGGC 1 cut(s) 21
PkrI GCNGC 3 cut(s) 70, 151, 265
PpuMI RGGWCCY 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 137
PspPI GGNCC 1 cut(s) 206
PspPPI RGGWCCY 1 cut(s) 206
PsuI RGATCY 1 cut(s) 5
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 3 cut(s) 69, 150, 264
Sau3AI GATC 1 cut(s) 5
Sau96I GGNCC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 29, 418
SduI GDGCHC 1 cut(s) 479
SetI ASST 5 cut(s) 30, 137, 208, 507, 527
SfaNI GCATC 2 cut(s) 161, 317
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 206
Sse9I AATT 1 cut(s) 591
SseBI AGGCCT 1 cut(s) 282
SsiI CCGC 4 cut(s) 36, 50, 68, 263
SspMI CTAG 5 cut(s) 140, 203, 210, 305, 380
StuI AGGCCT 1 cut(s) 282
StyD4I CCNGG 2 cut(s) 27, 416
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 507
TasI AATT 1 cut(s) 591
TauI GCSGC 2 cut(s) 71, 266
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 2 cut(s) 412, 467
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 4 cut(s) 188, 238, 347, 465
TspRI CASTG 2 cut(s) 412, 467
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 1 cut(s) 591
XmiI GTMKAC 1 cut(s) 80
XspI CTAG 5 cut(s) 140, 203, 210, 305, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.