Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016836

Physical Location & Seq

Genomic Coordinates Forward (+)

28149251 .. 28150647

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G276100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGGACATACAGAACTTTCTCCAACCCCTTGTGAAATTTGTCTCCACCAGATGGAAGGTTTGGACCAAAACACACAGCCTTAGTTCTGAATTACCACCAACCCATGAGCCTCTCTTTGGCAACAACAAGGCACACGATGAAACAGAACTAAGCAGAGAAGAAGTAGATATGGTGATGGGCCGGCTAGGAATGTGTAATGAACATGAGGCAGAGGGAGACAATATTGGAGAGAGGGTTGGCGCAGAGGAGCTTTGGAGACTGTTTGATGAGGAGGAGCCCAGCTTGGAGGAGGTGAAGGAAGCCTTTGATGTGTTTGATGAGAACAGAGATGGGTTTATAGATGCAGCAGAGGTACAAAGAGTTTTAAGCAATTTCGGTTTCAAGGATGCATTCGGATTGGACGAATGCAAGAGGATGATTAAGGCAGCAGATATGAACCAAGATGGAGTGATTGATTTTGATGAGTTTGTGAAACATATGGAGAACAGCTTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6

Protein Analysis

167

Amino Acids

19.18

Weight (kDa)

4.41

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31200
malus_domestica	MD13G1070500.v1.1
prunus_persica	Prupe.1G276100_v2.0.a1
pyrus_communis	pycom13g06330
rosa_chinensis	RchiOBHm_Chr4g0439581
rosa_laevigata	RLG00000006256
rosa_multiflora	Rmu_sc0002549.1_g000024
rosa_roxburghii	Rroxscaffold_5G00380520
rosa_rugosa	Rorug04G0320000
rosa_samantha	Rh4AG371000 Rh4BG382800 Rh4CG397400 Rh4DG377600
rosa_wichuraiana	Rw4G031630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	38
AfaI	GTAC	1 cut(s)	357
AfiI	CCNNNNNNNGG	2 cut(s)	54, 119
AgsI	TTSAA	1 cut(s)	385
AluBI	AGCT	3 cut(s)	253, 285, 492
AluI	AGCT	3 cut(s)	253, 285, 492
Alw26I	GTCTC	3 cut(s)	49, 213, 253
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	2 cut(s)	347, 428
ApoI	RAATTY	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	2 cut(s)	66, 181
AsuHPI	GGTGA	2 cut(s)	187, 307
AvaII	GGWCC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	359, 440
BccI	CCATC	4 cut(s)	48, 172, 326, 440
BcoDI	GTCTC	3 cut(s)	49, 213, 253
BfaI	CTAG	1 cut(s)	188
BisI	GCNGC	2 cut(s)	348, 429
BlsI	GCNGC	2 cut(s)	349, 430
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	2 cut(s)	66, 181
BmiI	GGNNCC	1 cut(s)	279
BmsI	GCATC	2 cut(s)	334, 379
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 119
Bse118I	RCCGGY	1 cut(s)	183
BseGI	GGATG	2 cut(s)	394, 423
BseLI	CCNNNNNNNGG	2 cut(s)	54, 119
BseRI	GAGGAG	4 cut(s)	263, 287, 290, 305
BseXI	GCAGC	2 cut(s)	359, 440
BseYI	CCCAGC	1 cut(s)	281
BshFI	GGCC	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	184
BslI	CCNNNNNNNGG	2 cut(s)	54, 119
BsmAI	GTCTC	3 cut(s)	49, 213, 253
BsmI	GAATGC	2 cut(s)	392, 413
BsnI	GGCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	2 cut(s)	83, 152
BstF5I	GGATG	2 cut(s)	394, 423
BstHHI	GCGC	1 cut(s)	245
BstMAI	GTCTC	3 cut(s)	49, 213, 253
BstV1I	GCAGC	2 cut(s)	359, 440
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	394, 423
Cac8I	GCNNGC	1 cut(s)	185
CfoI	GCGC	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	183
Cfr13I	GGNCC	2 cut(s)	66, 181
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	2 cut(s)	107, 206
CviJI	RGCY	9 cut(s)	81, 112, 183, 187, 253, 280, 285, 305, 492
CviKI_1	RGCY	9 cut(s)	81, 112, 183, 187, 253, 280, 285, 305, 492
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	2 cut(s)	83, 152
Eco24I	GRGCYC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	66
EcoT22I	ATGCAT	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	282
FaeI	CATG	2 cut(s)	110, 209
FaiI	YATR	8 cut(s)	11, 108, 173, 207, 341, 437, 480, 482
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	2 cut(s)	106, 205
FauNDI	CATATG	1 cut(s)	480
Fnu4HI	GCNGC	2 cut(s)	348, 429
FokI	GGATG	2 cut(s)	401, 430
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	2 cut(s)	348, 429
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	2 cut(s)	348, 429
GsaI	CCCAGC	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	1 cut(s)	184
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	2 cut(s)	110, 209
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	2 cut(s)	187, 307
Hpy188I	TCNGA	2 cut(s)	91, 398
HpyAV	CCTTC	2 cut(s)	52, 292
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4V	TGCA	3 cut(s)	347, 392, 411
HpyF3I	CTNAG	2 cut(s)	83, 152
Hsp92II	CATG	2 cut(s)	110, 209
HspAI	GCGC	1 cut(s)	243
KroI	GCCGGC	1 cut(s)	183
KroNI	GCCGGC	1 cut(s)	185
LmnI	GCTCC	2 cut(s)	250, 277
LpnPI	CCDG	3 cut(s)	64, 197, 295
Lsp1109I	GCAGC	2 cut(s)	359, 440
LweI	GCATC	2 cut(s)	334, 379
MaeI	CTAG	1 cut(s)	188
MboII	GAAGA	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	3 cut(s)	38, 92, 373
MmeI	TCCRAC	1 cut(s)	49
Mph1103I	ATGCAT	1 cut(s)	394
MroNI	GCCGGC	1 cut(s)	183
MseI	TTAA	2 cut(s)	368, 423
MspI	CCGG	1 cut(s)	184
Mva1269I	GAATGC	2 cut(s)	392, 413
NaeI	GCCGGC	1 cut(s)	185
NdeI	CATATG	1 cut(s)	480
NgoMIV	GCCGGC	1 cut(s)	183
NlaIII	CATG	2 cut(s)	110, 209
NlaIV	GGNNCC	1 cut(s)	279
NsiI	ATGCAT	1 cut(s)	394
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PctI	GAATGC	2 cut(s)	392, 413
PdiI	GCCGGC	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	54
PkrI	GCNGC	2 cut(s)	349, 430
PspFI	CCCAGC	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	66, 181
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	368, 423
SatI	GCNGC	2 cut(s)	348, 429
Sau96I	GGNCC	2 cut(s)	66, 181
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	6 cut(s)	63, 255, 287, 297, 357, 494
SfaNI	GCATC	2 cut(s)	334, 379
SinI	GGWCC	1 cut(s)	66
Sse9I	AATT	3 cut(s)	38, 92, 373
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	264
TasI	AATT	3 cut(s)	38, 92, 373
Tru1I	TTAA	2 cut(s)	368, 423
Tru9I	TTAA	2 cut(s)	368, 423
TseI	GCWGC	2 cut(s)	347, 428
TspDTI	ATGAA	3 cut(s)	156, 216, 452
Van91I	CCANNNNNTGG	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	1 cut(s)	38
XspI	CTAG	1 cut(s)	188
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.