Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0016836

Physical Location & Seq

Genomic Coordinates Reverse (-)

67872032 .. 67873080

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG371000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAGGACATACTAGCAGCCACAGCTCAACCGGGCTCCCTCTATTTTCTAGGACTGTTCCAACCCTTGTTGAAGCTCTGGACCAAAACCAAAAATCACCTAAACTATTCTGAGGCTCAAGTACTACTACTACCAACCCCTGATCAGCCCCTGCAATGCAACAAAGGTCGACAAGACGAAAAGTTGCTAGGCAAAGAAGAAGTGAAGATGGTGATGGGAAGGCTCGGACTATGCTACGAAGATGAGGGAGATGATGTTATTACTAATGAAGACATGGTTGGGGCAGAGTTGGTTTCAAGAGTATTTAGTGAGGCGGAGCCAAGCTTGGAGGAGGTAAAGGAAGCCTTTGATGTGTTTGATGAGAACAGAGATGGACTTATAGGCGCAGCTGATTTGCAGAGAGTTTTGTGCAATTTGGGTTTGAAGGGGAAGTTTGGATTGGAGGAATGCCAGAGGATGATCAAGGCAGTGGACACGAACCAAGATGGACTAGTTGATTTTGAAGAGTTCGTCAAACACATGGACAACTGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6

Protein Analysis

178

Amino Acids

20.02

Weight (kDa)

4.44

Isoelectric Point (pI)

31.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	110 - 174	5.9e-14	EF-hand domain pair
EF-hand_8	PF13833	124 - 172	2.8e-09	EF-hand domain pair
EF-hand_1	PF00036	149 - 174	1.4e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31200
malus_domestica	MD13G1070500.v1.1
prunus_persica	Prupe.1G276100_v2.0.a1
pyrus_communis	pycom13g06330
rosa_chinensis	RchiOBHm_Chr4g0439581
rosa_laevigata	RLG00000006256
rosa_multiflora	Rmu_sc0002549.1_g000024
rosa_roxburghii	Rroxscaffold_5G00380520
rosa_rugosa	Rorug04G0320000
rosa_samantha	Rh4AG371000 Rh4BG382800 Rh4CG397400 Rh4DG377600
rosa_wichuraiana	Rw4G031630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	169
AciI	CCGC	1 cut(s)	314
AfaI	GTAC	1 cut(s)	123
AgsI	TTSAA	4 cut(s)	73, 297, 424, 503
AhlI	ACTAGT	1 cut(s)	490
AjuI	GAANNNNNNNTTGG	4 cut(s)	261, 293, 422, 454
AluBI	AGCT	4 cut(s)	26, 76, 324, 389
AluI	AGCT	4 cut(s)	26, 76, 324, 389
AlwNI	CAGNNNCTG	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	17, 386
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	81
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	2 cut(s)	89, 223
AvaII	GGWCC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	29, 398
BccI	CCATC	4 cut(s)	202, 208, 365, 479
BclI	TGATCA	2 cut(s)	142, 459
BcnI	CCSGG	1 cut(s)	33
BcuI	ACTAGT	1 cut(s)	490
BfaI	CTAG	4 cut(s)	14, 50, 188, 491
BisI	GCNGC	2 cut(s)	18, 387
BlsI	GCNGC	2 cut(s)	19, 388
BmcAI	AGTACT	1 cut(s)	123
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	2 cut(s)	37, 318
BmrFI	CCNGG	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	102
BpuMI	CCSGG	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bse3DI	GCAATG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	462
BseMI	GCAATG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	2 cut(s)	29, 398
BsiSI	CCGG	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	452
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	142, 459
BspACI	CCGC	1 cut(s)	314
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	37, 318
BsrDI	GCAATG	1 cut(s)	161
BssMI	GATC	2 cut(s)	142, 459
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	498
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	462
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	2 cut(s)	145, 462
BstMBI	GATC	2 cut(s)	142, 459
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	29, 398
BstV2I	GAAGAC	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	462
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	474
CaiI	CAGNNNCTG	1 cut(s)	151
CfoI	GCGC	1 cut(s)	386
Cfr13I	GGNCC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	122
CviAII	CATG	2 cut(s)	274, 520
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	2 cut(s)	144, 461
DpnII	GATC	2 cut(s)	142, 459
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
EciI	GGCGGA	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	2 cut(s)	277, 523
FaiI	YATR	5 cut(s)	11, 232, 275, 380, 521
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FatI	CATG	2 cut(s)	273, 519
FbaI	TGATCA	2 cut(s)	142, 459
FblI	GTMKAC	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	18, 387
FokI	GGATG	1 cut(s)	469
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	18, 387
FspBI	CTAG	4 cut(s)	14, 50, 188, 491
GlaI	GCGC	1 cut(s)	385
GluI	GCNGC	2 cut(s)	18, 387
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	386
Hin1II	CATG	2 cut(s)	277, 523
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HindIII	AAGCTT	1 cut(s)	322
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	89, 223
Hpy166II	GTNNAC	2 cut(s)	170, 472
Hpy188I	TCNGA	2 cut(s)	112, 227
Hpy188III	TCNNGA	2 cut(s)	79, 297
Hpy8I	GTNNAC	2 cut(s)	170, 472
HpyAV	CCTTC	2 cut(s)	213, 418
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	4 cut(s)	154, 159, 397, 411
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	277, 523
HspAI	GCGC	1 cut(s)	384
Ksp22I	TGATCA	2 cut(s)	142, 459
Kzo9I	GATC	2 cut(s)	142, 459
LmnI	GCTCC	2 cut(s)	41, 316
LpnPI	CCDG	5 cut(s)	45, 64, 153, 164, 464
Lsp1109I	GCAGC	2 cut(s)	29, 398
MaeI	CTAG	4 cut(s)	14, 50, 188, 491
MalI	GATC	2 cut(s)	144, 461
MboI	GATC	2 cut(s)	142, 459
MboII	GAAGA	5 cut(s)	209, 217, 251, 281, 515
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	8 cut(s)	50, 106, 238, 304, 322, 325, 436, 447
MseI	TTAA	1 cut(s)	535
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	452
MwoI	GCNNNNNNNGC	1 cut(s)	23
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	2 cut(s)	142, 459
NlaIII	CATG	2 cut(s)	277, 523
NlaIV	GGNNCC	2 cut(s)	37, 318
PctI	GAATGC	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	19, 388
PspN4I	GGNNCC	2 cut(s)	37, 318
PspPI	GGNCC	1 cut(s)	81
PstNI	CAGNNNCTG	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
SalI	GTCGAC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	535
SatI	GCNGC	2 cut(s)	18, 387
Sau3AI	GATC	2 cut(s)	142, 459
Sau96I	GGNCC	1 cut(s)	81
ScaI	AGTACT	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	7 cut(s)	28, 78, 102, 169, 326, 336, 391
SinI	GGWCC	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
SpeI	ACTAGT	1 cut(s)	490
Sse9I	AATT	1 cut(s)	412
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	4 cut(s)	14, 50, 188, 491
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	169
TasI	AATT	1 cut(s)	412
TatI	WGTACW	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	535
Tru9I	TTAA	1 cut(s)	535
TscAI	CASTG	1 cut(s)	474
TseI	GCWGC	2 cut(s)	17, 386
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	474
VpaK11BI	GGWCC	1 cut(s)	81
XmiI	GTMKAC	1 cut(s)	169
XspI	CTAG	4 cut(s)	14, 50, 188, 491
ZrmI	AGTACT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.