Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002549.1

Orthogroup ID

OG0016836

Physical Location & Seq

Genomic Coordinates Forward (+)

100848 .. 101378

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002549.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggaggacatactagcagccacagctcaaccgggctccctctattttctaggactgttcctacccttgttgaagctctggaccaaaaccaaaaattacctaaactattctgagcctcaagtactactaccaacccctgatcagcccctgcaatgcaacaaaggacaagacgaaacgttgctaggcaaagaagaagtgaagatggtgatgggaaggctcggactatgctacgaagatgagggagatgatgttattactaatgaagacatggttggggcagagttgctttcaagagtatttagtgaggcggagccaagcttggaggaggtaaaggaagcctttgatgtgtttgatgagaacagagatggacttataggcgcagctgatttgcagagagttttgtgcaatttgggtttgaaggggaagtttggattggaggaatgccagaggatgatcaaggcagtggacatgaaccaagatggactagttgattttgaagagttcgtcaaacacatggacaactgcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6

Protein Analysis

176

Amino Acids

19.81

Weight (kDa)

4.28

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31200
malus_domestica	MD13G1070500.v1.1
prunus_persica	Prupe.1G276100_v2.0.a1
pyrus_communis	pycom13g06330
rosa_chinensis	RchiOBHm_Chr4g0439581
rosa_laevigata	RLG00000006256
rosa_multiflora	Rmu_sc0002549.1_g000024
rosa_roxburghii	Rroxscaffold_5G00380520
rosa_rugosa	Rorug04G0320000
rosa_samantha	Rh4AG371000 Rh4BG382800 Rh4CG397400 Rh4DG377600
rosa_wichuraiana	Rw4G031630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	308
AclI	AACGTT	1 cut(s)	176
AfaI	GTAC	1 cut(s)	123
AgsI	TTSAA	4 cut(s)	73, 291, 418, 497
AhlI	ACTAGT	1 cut(s)	484
AjuI	GAANNNNNNNTTGG	4 cut(s)	255, 287, 416, 448
AluBI	AGCT	4 cut(s)	26, 76, 318, 383
AluI	AGCT	4 cut(s)	26, 76, 318, 383
AlwNI	CAGNNNCTG	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	17, 380
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	81
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	29, 392
BccI	CCATC	4 cut(s)	196, 202, 359, 473
BclI	TGATCA	2 cut(s)	139, 453
BcnI	CCSGG	1 cut(s)	33
BcuI	ACTAGT	1 cut(s)	484
BfaI	CTAG	4 cut(s)	14, 50, 182, 485
BisI	GCNGC	2 cut(s)	18, 381
BlsI	GCNGC	2 cut(s)	19, 382
BmcAI	AGTACT	1 cut(s)	123
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	2 cut(s)	37, 312
BmrFI	CCNGG	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	102
BpuMI	CCSGG	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bse3DI	GCAATG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	456
BseMI	GCAATG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	29, 392
BsiSI	CCGG	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	139, 453
BspACI	CCGC	1 cut(s)	308
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	37, 312
BsrDI	GCAATG	1 cut(s)	158
BssMI	GATC	2 cut(s)	139, 453
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	492
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	2 cut(s)	142, 456
BstMBI	GATC	2 cut(s)	139, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	29, 392
BstV2I	GAAGAC	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	456
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
CaiI	CAGNNNCTG	1 cut(s)	148
CfoI	GCGC	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	122
CviAII	CATG	3 cut(s)	268, 469, 514
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	2 cut(s)	141, 455
DpnII	GATC	2 cut(s)	139, 453
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
EciI	GGCGGA	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	3 cut(s)	271, 472, 517
FaiI	YATR	6 cut(s)	11, 226, 269, 374, 470, 515
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FatI	CATG	3 cut(s)	267, 468, 513
FbaI	TGATCA	2 cut(s)	139, 453
Fnu4HI	GCNGC	2 cut(s)	18, 381
FokI	GGATG	1 cut(s)	463
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	18, 381
FspBI	CTAG	4 cut(s)	14, 50, 182, 485
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	2 cut(s)	18, 381
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	3 cut(s)	271, 472, 517
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HindIII	AAGCTT	1 cut(s)	316
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	2 cut(s)	112, 221
Hpy188III	TCNNGA	2 cut(s)	79, 291
Hpy8I	GTNNAC	1 cut(s)	466
HpyAV	CCTTC	2 cut(s)	207, 412
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	4 cut(s)	151, 156, 391, 405
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	176
Hsp92II	CATG	3 cut(s)	271, 472, 517
HspAI	GCGC	1 cut(s)	378
Ksp22I	TGATCA	2 cut(s)	139, 453
Kzo9I	GATC	2 cut(s)	139, 453
LmnI	GCTCC	2 cut(s)	41, 310
LpnPI	CCDG	5 cut(s)	45, 64, 150, 161, 458
Lsp1109I	GCAGC	2 cut(s)	29, 392
MaeI	CTAG	4 cut(s)	14, 50, 182, 485
MaeII	ACGT	1 cut(s)	176
MalI	GATC	2 cut(s)	141, 455
MboI	GATC	2 cut(s)	139, 453
MboII	GAAGA	5 cut(s)	203, 211, 245, 275, 509
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	2 cut(s)	94, 406
MnlI	CCTC	8 cut(s)	50, 126, 232, 298, 316, 319, 430, 441
MseI	TTAA	1 cut(s)	529
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	446
MwoI	GCNNNNNNNGC	1 cut(s)	23
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	2 cut(s)	139, 453
NlaIII	CATG	3 cut(s)	271, 472, 517
NlaIV	GGNNCC	2 cut(s)	37, 312
PctI	GAATGC	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	19, 382
Psp1406I	AACGTT	1 cut(s)	176
PspN4I	GGNNCC	2 cut(s)	37, 312
PspPI	GGNCC	1 cut(s)	81
PstNI	CAGNNNCTG	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	529
SatI	GCNGC	2 cut(s)	18, 381
Sau3AI	GATC	2 cut(s)	139, 453
Sau96I	GGNCC	1 cut(s)	81
ScaI	AGTACT	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	7 cut(s)	28, 78, 102, 179, 320, 330, 385
SinI	GGWCC	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
SpeI	ACTAGT	1 cut(s)	484
Sse9I	AATT	2 cut(s)	94, 406
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	4 cut(s)	14, 50, 182, 485
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	57
TaiI	ACGT	1 cut(s)	179
TasI	AATT	2 cut(s)	94, 406
TatI	WGTACW	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	529
Tru9I	TTAA	1 cut(s)	529
TscAI	CASTG	1 cut(s)	468
TseI	GCWGC	2 cut(s)	17, 380
TspDTI	ATGAA	2 cut(s)	276, 485
TspRI	CASTG	1 cut(s)	468
VpaK11BI	GGWCC	1 cut(s)	81
XspI	CTAG	4 cut(s)	14, 50, 182, 485
ZrmI	AGTACT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.