Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0016836

Physical Location & Seq

Genomic Coordinates Reverse (-)

64693630 .. 64694163

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG397400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAGGACATACTGCTAGCAGCCACAGCTCAACCGGGCTCCCTCTATTTTCTAGGACTGTTCCAACCCTTGTTGAAGCTCTGGACCAAAACCAAAAATTACCTAAACTATTCTGAACCTCAAGTACTACTACCAACCCCTGATCAGCCCCTGCAATGCAACAAAGGACAAGACGAAACGTTGCTAGGCAAAGAACAAGTGAAGATGGTGATGGGAAGGCTCGGACTATGCTACGAAGATGAGGGAGATGATGTTATTACTAATGAAGACATGGTTGGGGCAGAGTTGGTTTCAAGAGTATTTAATGAGGCGGAGCCAAGCTTGGAGGAGGTAAAGGAAGCCTTTGATGTGTTTGATGAGAACAGAGATGGACTTATAGGCGCAGCTGATTTGCAGAGAGTTTTGTGCAATTTGGGTTTGAAGGGGAAGTTTGGATTGGAGGAATGCCAGAGGATGATCAAGGCAGTGGACATGAACCAAGATGGACTAGTTGATTTTGAAGAGTTCGTCAAACACATGGACAACTGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6

Protein Analysis

177

Amino Acids

19.95

Weight (kDa)

4.3

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	109 - 173	1e-12	EF-hand domain pair
EF-hand_8	PF13833	123 - 171	2.4e-09	EF-hand domain pair
EF-hand_1	PF00036	148 - 173	6.2e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31200
malus_domestica	MD13G1070500.v1.1
prunus_persica	Prupe.1G276100_v2.0.a1
pyrus_communis	pycom13g06330
rosa_chinensis	RchiOBHm_Chr4g0439581
rosa_laevigata	RLG00000006256
rosa_multiflora	Rmu_sc0002549.1_g000024
rosa_roxburghii	Rroxscaffold_5G00380520
rosa_rugosa	Rorug04G0320000
rosa_samantha	Rh4AG371000 Rh4BG382800 Rh4CG397400 Rh4DG377600
rosa_wichuraiana	Rw4G031630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	311
AclI	AACGTT	1 cut(s)	179
AfaI	GTAC	1 cut(s)	126
AgsI	TTSAA	4 cut(s)	76, 294, 421, 500
AhlI	ACTAGT	1 cut(s)	487
AjuI	GAANNNNNNNTTGG	4 cut(s)	258, 290, 419, 451
AluBI	AGCT	4 cut(s)	29, 79, 321, 386
AluI	AGCT	4 cut(s)	29, 79, 321, 386
AlwNI	CAGNNNCTG	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	20, 383
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	1 cut(s)	84
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	220
AsuNHI	GCTAGC	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	32, 395
BccI	CCATC	4 cut(s)	199, 205, 362, 476
BclI	TGATCA	2 cut(s)	142, 456
BcnI	CCSGG	1 cut(s)	36
BcuI	ACTAGT	1 cut(s)	487
BfaI	CTAG	4 cut(s)	17, 53, 185, 488
BisI	GCNGC	2 cut(s)	21, 384
BlsI	GCNGC	2 cut(s)	22, 385
BmcAI	AGTACT	1 cut(s)	126
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	84
BmiI	GGNNCC	2 cut(s)	40, 315
BmrFI	CCNGG	1 cut(s)	36
BmtI	GCTAGC	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bse3DI	GCAATG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	459
BseMI	GCAATG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	32, 395
BsiSI	CCGG	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	142, 456
BspACI	CCGC	1 cut(s)	311
BspLI	GGNNCC	2 cut(s)	40, 315
BspOI	GCTAGC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	161
BssMI	GATC	2 cut(s)	142, 456
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	495
BstC8I	GCNNGC	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	459
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	2 cut(s)	145, 459
BstMBI	GATC	2 cut(s)	142, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	34
BstV1I	GCAGC	2 cut(s)	32, 395
BstV2I	GAAGAC	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	459
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	1 cut(s)	18
CaiI	CAGNNNCTG	1 cut(s)	151
CfoI	GCGC	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	3 cut(s)	271, 472, 517
CviQI	GTAC	1 cut(s)	125
DpnI	GATC	2 cut(s)	144, 458
DpnII	GATC	2 cut(s)	142, 456
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
EciI	GGCGGA	1 cut(s)	326
Eco24I	GRGCYC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	41
FaeI	CATG	3 cut(s)	274, 475, 520
FaiI	YATR	6 cut(s)	11, 229, 272, 377, 473, 518
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FatI	CATG	3 cut(s)	270, 471, 516
FbaI	TGATCA	2 cut(s)	142, 456
Fnu4HI	GCNGC	2 cut(s)	21, 384
FokI	GGATG	1 cut(s)	466
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	2 cut(s)	21, 384
FspBI	CTAG	4 cut(s)	17, 53, 185, 488
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	2 cut(s)	21, 384
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	383
Hin1II	CATG	3 cut(s)	274, 475, 520
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HindIII	AAGCTT	1 cut(s)	319
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	2 cut(s)	115, 224
Hpy188III	TCNNGA	2 cut(s)	82, 294
Hpy8I	GTNNAC	1 cut(s)	469
HpyAV	CCTTC	2 cut(s)	210, 415
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	4 cut(s)	154, 159, 394, 408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	179
Hsp92II	CATG	3 cut(s)	274, 475, 520
HspAI	GCGC	1 cut(s)	381
Ksp22I	TGATCA	2 cut(s)	142, 456
Kzo9I	GATC	2 cut(s)	142, 456
LmnI	GCTCC	2 cut(s)	44, 313
LpnPI	CCDG	5 cut(s)	48, 67, 153, 164, 461
Lsp1109I	GCAGC	2 cut(s)	32, 395
MaeI	CTAG	4 cut(s)	17, 53, 185, 488
MaeII	ACGT	1 cut(s)	179
MalI	GATC	2 cut(s)	144, 458
MboI	GATC	2 cut(s)	142, 456
MboII	GAAGA	4 cut(s)	214, 248, 278, 512
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	2 cut(s)	97, 409
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	8 cut(s)	53, 129, 235, 301, 319, 322, 433, 444
MseI	TTAA	2 cut(s)	303, 532
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	36
Mva1269I	GAATGC	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	26
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	2 cut(s)	142, 456
NheI	GCTAGC	1 cut(s)	16
NlaIII	CATG	3 cut(s)	274, 475, 520
NlaIV	GGNNCC	2 cut(s)	40, 315
PctI	GAATGC	1 cut(s)	449
PkrI	GCNGC	2 cut(s)	22, 385
Psp1406I	AACGTT	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	40, 315
PspPI	GGNCC	1 cut(s)	84
PsrI	GAACNNNNNNTAC	2 cut(s)	108, 140
PstNI	CAGNNNCTG	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	303, 532
SatI	GCNGC	2 cut(s)	21, 384
Sau3AI	GATC	2 cut(s)	142, 456
Sau96I	GGNCC	1 cut(s)	84
ScaI	AGTACT	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	8 cut(s)	31, 81, 105, 121, 182, 323, 333, 388
SinI	GGWCC	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
SpeI	ACTAGT	1 cut(s)	487
Sse9I	AATT	2 cut(s)	97, 409
SsiI	CCGC	1 cut(s)	311
SspMI	CTAG	4 cut(s)	17, 53, 185, 488
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	182
TasI	AATT	2 cut(s)	97, 409
TatI	WGTACW	1 cut(s)	124
Tru1I	TTAA	2 cut(s)	303, 532
Tru9I	TTAA	2 cut(s)	303, 532
TscAI	CASTG	1 cut(s)	471
TseI	GCWGC	2 cut(s)	20, 383
TspDTI	ATGAA	2 cut(s)	279, 488
TspRI	CASTG	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	84
XspI	CTAG	4 cut(s)	17, 53, 185, 488
ZrmI	AGTACT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.