Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012398

Physical Location & Seq

Genomic Coordinates Reverse (-)

28867162 .. 28869342

Gene Structure 2181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G289700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCCGACGTTGACGAAGCTCTTTACAATGCAAGAAGTCTCCAAGCAAAACAGCAAAGACAACTGCTGGGTCGTCATTGATGGCAAGGTGTACGATTTGACACTATACTTGGACGATCACCCTGGTGGAGACGATGTAGTCCTTGCTGCAGCTGGAAGAGATGCCACAGAAGATTTTGAAGATGCTGGGCATAGCAATATTGCAAAGGATCTCATGGGAGCCTTTTGCATTGGAGAGCTTGATGTTGATACGACTTCCCCAGAGATAACCTCTAAGAATCAACCAGTTGATTATCCTCAGAAGATCAAGGACTTGACAAAGCAATACTGGGCTGTTCCTGTGGCCGTGGTTGGCATCTCTGTGGTTGTTGGCTTCTTGTACTTGCGGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0010319 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

132

Amino Acids

14.44

Weight (kDa)

4.64

Isoelectric Point (pI)

30.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26340
fragaria_vesca	FvH4_4g29701
malus_domestica	MD13G1059800.v1.1 MD13G1059900.v1.1 MD16G1059300.v1.1
prunus_persica	Prupe.1G289700_v2.0.a1
pyrus_communis	pycom13g05330
rosa_chinensis	RchiOBHm_Chr4g0437951
rosa_laevigata	RLG00000006399
rosa_multiflora	Rmu_sc0007538.1_g000013 Rmu_sc0025141.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379110
rosa_rugosa	Rorug04G0305800
rosa_samantha	Rh4AG357400 Rh4BG368300 Rh4CG382400 Rh4DG363200
rosa_wichuraiana	Rw0G011530 Rw0G016140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	342
AfaI	GTAC	2 cut(s)	92, 380
AgsI	TTSAA	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	121
AleI	CACNNNNGTG	1 cut(s)	123
AluBI	AGCT	3 cut(s)	19, 152, 238
AluI	AGCT	3 cut(s)	19, 152, 238
Alw26I	GTCTC	2 cut(s)	43, 123
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	2 cut(s)	146, 149
AsuHPI	GGTGA	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	133, 161
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	329
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	43, 123
BfmI	CTRYAG	1 cut(s)	147
BisI	GCNGC	2 cut(s)	147, 150
BlsI	GCNGC	2 cut(s)	148, 151
Bme1390I	CCNGG	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	123
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	3 cut(s)	151, 172, 363
BmuI	ACTGGG	1 cut(s)	337
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BsaJI	CCNNGG	2 cut(s)	121, 345
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bse1I	ACTGG	2 cut(s)	284, 332
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	121, 345
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	2 cut(s)	284, 332
BseXI	GCAGC	2 cut(s)	133, 161
BseYI	CCCAGC	2 cut(s)	66, 185
BshFI	GGCC	1 cut(s)	344
BsmAI	GTCTC	2 cut(s)	43, 123
BsmBI	CGTCTC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	115, 208, 303
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	220
BspMAI	CTGCAG	1 cut(s)	151
BspPI	GGATC	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	284, 332
BssECI	CCNNGG	2 cut(s)	121, 345
BssMI	GATC	3 cut(s)	115, 208, 303
Bst2UI	CCWGG	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	151
BstDEI	CTNAG	2 cut(s)	273, 297
BstDSI	CCRYGG	1 cut(s)	345
BstKTI	GATC	3 cut(s)	118, 211, 306
BstMAI	GTCTC	2 cut(s)	43, 123
BstMBI	GATC	3 cut(s)	115, 208, 303
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	133, 161
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	344
BtgI	CCRYGG	1 cut(s)	345
Csp6I	GTAC	2 cut(s)	91, 379
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	7 cut(s)	19, 152, 221, 238, 332, 344, 372
CviKI_1	RGCY	7 cut(s)	19, 152, 221, 238, 332, 344, 372
CviQI	GTAC	2 cut(s)	91, 379
DdeI	CTNAG	2 cut(s)	273, 297
DpnI	GATC	3 cut(s)	117, 210, 305
DpnII	GATC	3 cut(s)	115, 208, 303
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	121
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	106, 192, 215
FatI	CATG	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	147, 150
Fsp4HI	GCNGC	2 cut(s)	147, 150
GluI	GCNGC	2 cut(s)	147, 150
GsaI	CCCAGC	2 cut(s)	70, 189
HaeIII	GGCC	1 cut(s)	344
Hin1II	CATG	1 cut(s)	217
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	277
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	12, 91
Hpy188I	TCNGA	1 cut(s)	300
Hpy8I	GTNNAC	2 cut(s)	12, 91
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	4 cut(s)	31, 149, 203, 228
HpyF3I	CTNAG	2 cut(s)	273, 297
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	3 cut(s)	115, 208, 303
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	9 cut(s)	52, 108, 135, 138, 171, 273, 297, 313, 351
Lsp1109I	GCAGC	2 cut(s)	133, 161
LweI	GCATC	3 cut(s)	151, 172, 363
MaeII	ACGT	1 cut(s)	8
MalI	GATC	3 cut(s)	117, 210, 305
MboI	GATC	3 cut(s)	115, 208, 303
MboII	GAAGA	4 cut(s)	168, 182, 191, 313
MflI	RGATCY	1 cut(s)	208
MnlI	CCTC	2 cut(s)	280, 306
MslI	CAYNNNNRTG	2 cut(s)	123, 359
MspA1I	CMGCKG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
NdeII	GATC	3 cut(s)	115, 208, 303
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	220
OliI	CACNNNNGTG	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	148, 151
Psp6I	CCWGG	1 cut(s)	121
PspFI	CCCAGC	2 cut(s)	66, 185
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	220
PstI	CTGCAG	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	2 cut(s)	92, 380
RsaNI	GTAC	2 cut(s)	91, 379
RseI	CAYNNNNRTG	2 cut(s)	123, 359
SatI	GCNGC	2 cut(s)	147, 150
Sau3AI	GATC	3 cut(s)	115, 208, 303
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	6 cut(s)	11, 21, 90, 154, 240, 272
SfaNI	GCATC	3 cut(s)	151, 172, 363
SfcI	CTRYAG	1 cut(s)	147
SmiMI	CAYNNNNRTG	2 cut(s)	123, 359
SsiI	CCGC	1 cut(s)	385
SspI	AATATT	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	121
TaiI	ACGT	1 cut(s)	11
TatI	WGTACW	1 cut(s)	378
TfiI	GAWTC	1 cut(s)	277
TseI	GCWGC	2 cut(s)	146, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.