Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012398

Physical Location & Seq

Genomic Coordinates Forward (+)

59612850 .. 59614784

Gene Structure 1935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCCGACGCTGACGAAGCTCTACACAATGCAAGAAGCCTCGCAGCACAACACCAAAGACGACTGCTGGATCGTCGTCGACGGCAAGGTGTACGATGTGTCAACATATTTGGATGATCACCCTGGTGGAGATGATGTAATCCTTGCTACCACTGGCAAAGATGCCACTGACGATTTTGAAGATGCTGGGCACAGCAAAAGTGCAAAGGAGCTCATGGAAACCATGTGCATTGGAGAGCTTGACACAGACACCTCTGCCTCAGCTGAACTTGAGAATCAACCAACTGGTTATCCGCAGAAGCTCATGACCCTGACAAAGCAATACTGGGCTGTTCCTGCGGCTGTTGCGGGCATCTCTGTGGTGGTTGGCTTCTTGTACTTGCGCAAGAAGAATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0010319 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

132

Amino Acids

14.47

Weight (kDa)

4.5

Isoelectric Point (pI)

17.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyt-b5	PF00173	9 - 81	1.1e-29	Cytochrome b5-like Heme/Steroid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26340
fragaria_vesca	FvH4_4g29701
malus_domestica	MD13G1059800.v1.1 MD13G1059900.v1.1 MD16G1059300.v1.1
prunus_persica	Prupe.1G289700_v2.0.a1
pyrus_communis	pycom13g05330
rosa_chinensis	RchiOBHm_Chr4g0437951
rosa_laevigata	RLG00000006399
rosa_multiflora	Rmu_sc0007538.1_g000013 Rmu_sc0025141.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379110
rosa_rugosa	Rorug04G0305800
rosa_samantha	Rh4AG357400 Rh4BG368300 Rh4CG382400 Rh4DG363200
rosa_wichuraiana	Rw0G011530 Rw0G016140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	78
AciI	CCGC	3 cut(s)	293, 338, 347
AclWI	GGATC	1 cut(s)	77
AfaI	GTAC	2 cut(s)	92, 377
AgsI	TTSAA	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	121
AleI	CACNNNNGTG	1 cut(s)	123
AluBI	AGCT	5 cut(s)	19, 211, 238, 263, 301
AluI	AGCT	5 cut(s)	19, 211, 238, 263, 301
Alw21I	GWGCWC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	384
AsuHPI	GGTGA	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	259
BbvI	GCAGC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	123
BclI	TGATCA	1 cut(s)	115
BisI	GCNGC	2 cut(s)	44, 339
BlsI	GCNGC	2 cut(s)	45, 340
Bme1390I	CCNGG	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	123
BmrI	ACTGGG	1 cut(s)	334
BmsI	GCATC	3 cut(s)	151, 172, 360
BmuI	ACTGGG	1 cut(s)	334
Bpu10I	CCTNAGC	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bse1I	ACTGG	3 cut(s)	157, 289, 329
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	3 cut(s)	157, 289, 329
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	55
BseYI	CCCAGC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	192, 213
Bsp143I	GATC	2 cut(s)	69, 115
BspACI	CCGC	3 cut(s)	293, 338, 347
BspCNI	CTCAG	1 cut(s)	272
BspHI	TCATGA	1 cut(s)	303
BspPI	GGATC	1 cut(s)	77
BsrI	ACTGG	3 cut(s)	157, 289, 329
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	69, 115
Bst2UI	CCWGG	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	1 cut(s)	259
BstF5I	GGATG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	2 cut(s)	72, 118
BstMBI	GATC	2 cut(s)	69, 115
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 335, 344
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	2 cut(s)	150, 165
Cac8I	GCNNGC	1 cut(s)	349
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	1 cut(s)	384
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	91, 376
CviAII	CATG	4 cut(s)	214, 223, 304, 396
CviJI	RGCY	9 cut(s)	19, 38, 211, 238, 263, 301, 329, 341, 369
CviKI_1	RGCY	9 cut(s)	19, 38, 211, 238, 263, 301, 329, 341, 369
CviQI	GTAC	2 cut(s)	91, 376
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	2 cut(s)	71, 117
DpnII	GATC	2 cut(s)	69, 115
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	213
Eco53kI	GAGCTC	1 cut(s)	211
EcoICRI	GAGCTC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	213
FaeI	CATG	4 cut(s)	217, 226, 307, 399
FaiI	YATR	5 cut(s)	106, 215, 224, 305, 397
FatI	CATG	4 cut(s)	213, 222, 303, 395
FauI	CCCGC	1 cut(s)	340
FbaI	TGATCA	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	44, 339
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	44, 339
FspI	TGCGCA	1 cut(s)	383
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	2 cut(s)	44, 339
GsaI	CCCAGC	1 cut(s)	189
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	384
Hin1II	CATG	4 cut(s)	217, 226, 307, 399
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HincII	GTYRAC	2 cut(s)	79, 102
HindII	GTYRAC	2 cut(s)	79, 102
HinfI	GANTC	1 cut(s)	274
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	3 cut(s)	79, 91, 102
Hpy188III	TCNNGA	1 cut(s)	304
Hpy8I	GTNNAC	3 cut(s)	79, 91, 102
Hpy99I	CGWCG	4 cut(s)	10, 77, 80, 83
HpyCH4V	TGCA	3 cut(s)	31, 203, 228
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 335, 344
HpyF3I	CTNAG	1 cut(s)	259
Hsp92II	CATG	4 cut(s)	217, 226, 307, 399
HspAI	GCGC	1 cut(s)	382
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	69, 115
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	9 cut(s)	52, 108, 135, 138, 171, 270, 310, 323, 348
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	3 cut(s)	151, 172, 360
MalI	GATC	2 cut(s)	71, 117
MboI	GATC	2 cut(s)	69, 115
MboII	GAAGA	1 cut(s)	191
MhlI	GDGCHC	2 cut(s)	192, 213
MnlI	CCTC	3 cut(s)	49, 262, 268
MslI	CAYNNNNRTG	2 cut(s)	123, 356
MspA1I	CMGCKG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	3 cut(s)	16, 335, 344
NdeII	GATC	2 cut(s)	69, 115
NlaIII	CATG	4 cut(s)	217, 226, 307, 399
NsbI	TGCGCA	1 cut(s)	383
OliI	CACNNNNGTG	1 cut(s)	123
PagI	TCATGA	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	45, 340
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	2 cut(s)	92, 377
RsaNI	GTAC	2 cut(s)	91, 376
RseI	CAYNNNNRTG	2 cut(s)	123, 356
SacI	GAGCTC	1 cut(s)	213
SalI	GTCGAC	1 cut(s)	77
SatI	GCNGC	2 cut(s)	44, 339
Sau3AI	GATC	2 cut(s)	69, 115
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	2 cut(s)	192, 213
SetI	ASST	7 cut(s)	21, 90, 213, 240, 254, 265, 303
SfaNI	GCATC	3 cut(s)	151, 172, 360
SgrDI	CGTCGACG	1 cut(s)	77
SmiMI	CAYNNNNRTG	2 cut(s)	123, 356
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SsiI	CCGC	3 cut(s)	293, 338, 347
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	121
TaqI	TCGA	1 cut(s)	78
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	274
TscAI	CASTG	2 cut(s)	157, 172
TseI	GCWGC	1 cut(s)	43
TspRI	CASTG	2 cut(s)	157, 172
XmiI	GTMKAC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.