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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G76250 |
| fragaria_vesca | FvH4_2g37560 |
| malus_domestica | MD08G1003100.v1.1 MD15G1002800.v1.1 |
| prunus_persica | Prupe.1G355100_v2.0.a1 Prupe.1G355100_v2.0.a1 |
| pyrus_communis | pycom08g00260 pycom15g00170 |
| rosa_chinensis | RchiOBHm_Chr6g0304171 |
| rosa_laevigata | RLG00000011009 |
| rosa_multiflora | Rmu_co8333233.1_g000001 Rmu_sc0017984.1_g000001 Rmu_ssc0000218.1_g000009 |
| rosa_roxburghii | Rroxscaffold_7G00164000 |
| rosa_rugosa | Rorug06G0328200 |
| rosa_samantha | Rh6AG442300 Rh6BG460400 Rh6CG454500 Rh6DG441700 |
| rosa_wichuraiana | Rw6G038340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 262, 650 |
| AccB1I | GGYRCC | 2 cut(s) | 895, 1288 |
| AccBSI | CCGCTC | 3 cut(s) | 536, 688, 1011 |
| AccI | GTMKAC | 1 cut(s) | 366 |
| AccII | CGCG | 3 cut(s) | 458, 805, 833 |
| AclWI | GGATC | 2 cut(s) | 473, 601 |
| AcoI | YGGCCR | 3 cut(s) | 6, 166, 1186 |
| AcsI | RAATTY | 2 cut(s) | 391, 1193 |
| AcuI | CTGAAG | 1 cut(s) | 619 |
| AcyI | GRCGYC | 1 cut(s) | 983 |
| AdeI | CACNNNGTG | 1 cut(s) | 706 |
| AfaI | GTAC | 1 cut(s) | 719 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 462, 891, 1010, 1023 |
| AgsI | TTSAA | 5 cut(s) | 271, 436, 590, 871, 1255 |
| AhlI | ACTAGT | 1 cut(s) | 233 |
| AjnI | CCWGG | 3 cut(s) | 582, 720, 1103 |
| AluBI | AGCT | 8 cut(s) | 346, 520, 639, 741, 786, 850, 1095, 1126 |
| AluI | AGCT | 8 cut(s) | 346, 520, 639, 741, 786, 850, 1095, 1126 |
| Alw21I | GWGCWC | 1 cut(s) | 348 |
| Alw26I | GTCTC | 2 cut(s) | 500, 1157 |
| AlwI | GGATC | 2 cut(s) | 473, 601 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 721, 1029 |
| Ama87I | CYCGRG | 4 cut(s) | 503, 660, 888, 997 |
| ApaI | GGGCCC | 2 cut(s) | 334, 1004 |
| ApeKI | GCWGC | 3 cut(s) | 187, 594, 1199 |
| ApoI | RAATTY | 2 cut(s) | 391, 1193 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 906, 938 |
| AspA2I | CCTAGG | 1 cut(s) | 461 |
| AspLEI | GCGC | 4 cut(s) | 279, 460, 807, 1330 |
| AsuC2I | CCSGG | 4 cut(s) | 334, 732, 998, 999 |
| AsuHPI | GGTGA | 2 cut(s) | 874, 1243 |
| AvaI | CYCGRG | 4 cut(s) | 503, 660, 888, 997 |
| AvaII | GGWCC | 6 cut(s) | 255, 300, 421, 724, 937, 1098 |
| AvrII | CCTAGG | 1 cut(s) | 461 |
| BaeGI | GKGCMC | 2 cut(s) | 334, 1004 |
| BalI | TGGCCA | 2 cut(s) | 8, 1188 |
| BanI | GGYRCC | 2 cut(s) | 895, 1288 |
| BanII | GRGCYC | 4 cut(s) | 334, 348, 737, 1004 |
| BbsI | GAAGAC | 1 cut(s) | 79 |
| Bbv12I | GWGCWC | 1 cut(s) | 348 |
| BbvI | GCAGC | 3 cut(s) | 199, 581, 1186 |
| BccI | CCATC | 1 cut(s) | 830 |
| BceAI | ACGGC | 6 cut(s) | 153, 296, 340, 685, 948, 964 |
| BciT130I | CCWGG | 3 cut(s) | 584, 722, 1105 |
| BcnI | CCSGG | 4 cut(s) | 334, 732, 998, 999 |
| BcoDI | GTCTC | 2 cut(s) | 500, 1157 |
| BcuI | ACTAGT | 1 cut(s) | 233 |
| BfaI | CTAG | 2 cut(s) | 234, 462 |
| BfmI | CTRYAG | 1 cut(s) | 1030 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 872, 948, 1033 |
| BisI | GCNGC | 6 cut(s) | 47, 188, 191, 456, 595, 1200 |
| BlnI | CCTAGG | 1 cut(s) | 461 |
| BlpI | GCTNAGC | 1 cut(s) | 1073 |
| BlsI | GCNGC | 6 cut(s) | 48, 189, 192, 457, 596, 1201 |
| Bme1390I | CCNGG | 7 cut(s) | 334, 584, 722, 732, 998, 999, 1105 |
| Bme18I | GGWCC | 6 cut(s) | 255, 300, 421, 724, 937, 1098 |
| BmeT110I | CYCGRG | 4 cut(s) | 503, 660, 888, 997 |
| BmrFI | CCNGG | 7 cut(s) | 334, 584, 722, 732, 998, 999, 1105 |
| BmrI | ACTGGG | 1 cut(s) | 1291 |
| BmsI | GCATC | 3 cut(s) | 304, 1059, 1123 |
| BmuI | ACTGGG | 1 cut(s) | 1291 |
| BpiI | GAAGAC | 1 cut(s) | 79 |
| BpmI | CTGGAG | 2 cut(s) | 721, 1106 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1073 |
| BpuEI | CTTGAG | 1 cut(s) | 434 |
| BpuMI | CCSGG | 4 cut(s) | 334, 732, 998, 999 |
| BsaBI | GATNNNNATC | 1 cut(s) | 294 |
| BsaHI | GRCGYC | 1 cut(s) | 983 |
| BsaI | GGTCTC | 1 cut(s) | 1157 |
| BsaJI | CCNNGG | 6 cut(s) | 461, 889, 997, 1045, 1103, 1104 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 963, 993 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 462, 891, 1010, 1023 |
| Bse1I | ACTGG | 6 cut(s) | 178, 650, 680, 977, 1286, 1295 |
| Bse8I | GATNNNNATC | 1 cut(s) | 294 |
| BseBI | CCWGG | 3 cut(s) | 584, 722, 1105 |
| BseDI | CCNNGG | 6 cut(s) | 461, 889, 997, 1045, 1103, 1104 |
| BseGI | GGATG | 3 cut(s) | 289, 841, 1069 |
| BseJI | GATNNNNATC | 1 cut(s) | 294 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 462, 891, 1010, 1023 |
| BseMII | CTCAG | 1 cut(s) | 501 |
| BseNI | ACTGG | 6 cut(s) | 178, 650, 680, 977, 1286, 1295 |
| BseRI | GAGGAG | 2 cut(s) | 62, 437 |
| BseSI | GKGCMC | 2 cut(s) | 334, 1004 |
| BseXI | GCAGC | 3 cut(s) | 199, 581, 1186 |
| BsgI | GTGCAG | 2 cut(s) | 392, 1042 |
| Bsh1236I | CGCG | 3 cut(s) | 458, 805, 833 |
| Bsh1285I | CGRYCG | 1 cut(s) | 760 |
| BshNI | GGYRCC | 2 cut(s) | 895, 1288 |
| BsiEI | CGRYCG | 1 cut(s) | 760 |
| BsiHKAI | GWGCWC | 1 cut(s) | 348 |
| BsiHKCI | CYCGRG | 4 cut(s) | 503, 660, 888, 997 |
| BsiSI | CCGG | 3 cut(s) | 334, 731, 998 |
| BslFI | GGGAC | 3 cut(s) | 268, 710, 726 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 462, 891, 1010, 1023 |
| BsmAI | GTCTC | 2 cut(s) | 500, 1157 |
| BsmFI | GGGAC | 3 cut(s) | 268, 710, 726 |
| BsmI | GAATGC | 2 cut(s) | 555, 685 |
| Bso31I | GGTCTC | 1 cut(s) | 1157 |
| BsoBI | CYCGRG | 4 cut(s) | 503, 660, 888, 997 |
| Bsp120I | GGGCCC | 2 cut(s) | 330, 1000 |
| Bsp1286I | GDGCHC | 4 cut(s) | 334, 348, 737, 1004 |
| Bsp143I | GATC | 5 cut(s) | 34, 152, 397, 465, 606 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1073 |
| BspCNI | CTCAG | 1 cut(s) | 502 |
| BspFNI | CGCG | 3 cut(s) | 458, 805, 833 |
| BspMAI | CTGCAG | 1 cut(s) | 1034 |
| BspPI | GGATC | 2 cut(s) | 473, 601 |
| BspT107I | GGYRCC | 2 cut(s) | 895, 1288 |
| BspTNI | GGTCTC | 1 cut(s) | 1157 |
| BsrBI | CCGCTC | 3 cut(s) | 536, 688, 1011 |
| BsrI | ACTGG | 6 cut(s) | 178, 650, 680, 977, 1286, 1295 |
| BssECI | CCNNGG | 6 cut(s) | 461, 889, 997, 1045, 1103, 1104 |
| BssMI | GATC | 5 cut(s) | 34, 152, 397, 465, 606 |
| BssNI | GRCGYC | 1 cut(s) | 983 |
| BssT1I | CCWWGG | 2 cut(s) | 461, 1045 |
| Bst2UI | CCWGG | 3 cut(s) | 584, 722, 1105 |
| Bst4CI | ACNGT | 2 cut(s) | 717, 1231 |
| BstACI | GRCGYC | 1 cut(s) | 983 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1029 |
| BstC8I | GCNNGC | 7 cut(s) | 848, 1025, 1034, 1079, 1118, 1186, 1326 |
| BstDEI | CTNAG | 2 cut(s) | 510, 1073 |
| BstF5I | GGATG | 3 cut(s) | 289, 841, 1069 |
| BstFNI | CGCG | 3 cut(s) | 458, 805, 833 |
| BstHHI | GCGC | 4 cut(s) | 279, 460, 807, 1330 |
| BstKTI | GATC | 5 cut(s) | 37, 155, 400, 468, 609 |
| BstMAI | GTCTC | 2 cut(s) | 500, 1157 |
| BstMBI | GATC | 5 cut(s) | 34, 152, 397, 465, 606 |
| BstMCI | CGRYCG | 1 cut(s) | 760 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 352, 561, 872, 948, 1008, 1029, 1033, 1078, 1142 |
| BstNI | CCWGG | 3 cut(s) | 584, 722, 1105 |
| BstSCI | CCNGG | 7 cut(s) | 332, 582, 720, 730, 996, 997, 1103 |
| BstSFI | CTRYAG | 1 cut(s) | 1030 |
| BstSLI | GKGCMC | 2 cut(s) | 334, 1004 |
| BstUI | CGCG | 3 cut(s) | 458, 805, 833 |
| BstV1I | GCAGC | 3 cut(s) | 199, 581, 1186 |
| BstV2I | GAAGAC | 1 cut(s) | 79 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 836 |
| BtsCI | GGATG | 3 cut(s) | 289, 841, 1069 |
| BtsI | GCAGTG | 1 cut(s) | 1244 |
| BtsIMutI | CAGTG | 4 cut(s) | 984, 1244, 1302, 1336 |
| Cac8I | GCNNGC | 7 cut(s) | 848, 1025, 1034, 1079, 1118, 1186, 1326 |
| CaiI | CAGNNNCTG | 2 cut(s) | 721, 1029 |
| CfoI | GCGC | 4 cut(s) | 279, 460, 807, 1330 |
| Cfr9I | CCCGGG | 1 cut(s) | 997 |
| CpoI | CGGWCCG | 1 cut(s) | 937 |
| CseI | GACGC | 2 cut(s) | 972, 1151 |
| CsiI | ACCWGGT | 2 cut(s) | 582, 720 |
| Csp6I | GTAC | 1 cut(s) | 718 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1070, 1105 |
| CspI | CGGWCCG | 1 cut(s) | 937 |
| CviAII | CATG | 3 cut(s) | 499, 1139, 1146 |
| CviQI | GTAC | 1 cut(s) | 718 |
| DdeI | CTNAG | 2 cut(s) | 510, 1073 |
| DpnI | GATC | 5 cut(s) | 36, 154, 399, 467, 608 |
| DpnII | GATC | 5 cut(s) | 34, 152, 397, 465, 606 |
| DraIII | CACNNNGTG | 1 cut(s) | 706 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 262, 650 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 262, 650 |
| EaeI | YGGCCR | 3 cut(s) | 6, 166, 1186 |
| EciI | GGCGGA | 2 cut(s) | 762, 833 |
| Ecl136II | GAGCTC | 1 cut(s) | 346 |
| Eco130I | CCWWGG | 2 cut(s) | 461, 1045 |
| Eco147I | AGGCCT | 1 cut(s) | 1036 |
| Eco24I | GRGCYC | 4 cut(s) | 334, 348, 737, 1004 |
| Eco31I | GGTCTC | 1 cut(s) | 1157 |
| Eco47I | GGWCC | 6 cut(s) | 255, 300, 421, 724, 937, 1098 |
| Eco53kI | GAGCTC | 1 cut(s) | 346 |
| Eco57I | CTGAAG | 1 cut(s) | 619 |
| Eco88I | CYCGRG | 4 cut(s) | 503, 660, 888, 997 |
| EcoICRI | GAGCTC | 1 cut(s) | 346 |
| EcoO109I | RGGNCCY | 4 cut(s) | 330, 562, 1026, 1049 |
| EcoRI | GAATTC | 1 cut(s) | 391 |
| EcoRII | CCWGG | 3 cut(s) | 582, 720, 1103 |
| EcoT14I | CCWWGG | 2 cut(s) | 461, 1045 |
| EcoT38I | GRGCYC | 4 cut(s) | 334, 348, 737, 1004 |
| ErhI | CCWWGG | 2 cut(s) | 461, 1045 |
| FaeI | CATG | 3 cut(s) | 502, 1142, 1149 |
| FaiI | YATR | 9 cut(s) | 203, 419, 500, 605, 616, 791, 901, 1140, 1147 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 582, 614 |
| FaqI | GGGAC | 3 cut(s) | 268, 710, 726 |
| FatI | CATG | 3 cut(s) | 498, 1138, 1145 |
| FauI | CCCGC | 3 cut(s) | 693, 702, 1004 |
| FblI | GTMKAC | 1 cut(s) | 366 |
| Fnu4HI | GCNGC | 6 cut(s) | 47, 188, 191, 456, 595, 1200 |
| FokI | GGATG | 3 cut(s) | 296, 848, 1076 |
| FriOI | GRGCYC | 4 cut(s) | 334, 348, 737, 1004 |
| Fsp4HI | GCNGC | 6 cut(s) | 47, 188, 191, 456, 595, 1200 |
| FspBI | CTAG | 2 cut(s) | 234, 462 |
| GlaI | GCGC | 4 cut(s) | 278, 459, 806, 1329 |
| GluI | GCNGC | 6 cut(s) | 47, 188, 191, 456, 595, 1200 |
| GsuI | CTGGAG | 2 cut(s) | 721, 1106 |
| HapII | CCGG | 3 cut(s) | 334, 731, 998 |
| HgaI | GACGC | 2 cut(s) | 972, 1151 |
| HhaI | GCGC | 4 cut(s) | 279, 460, 807, 1330 |
| Hin1I | GRCGYC | 1 cut(s) | 983 |
| Hin1II | CATG | 3 cut(s) | 502, 1142, 1149 |
| Hin6I | GCGC | 4 cut(s) | 277, 458, 805, 1328 |
| HinP1I | GCGC | 4 cut(s) | 277, 458, 805, 1328 |
| HincII | GTYRAC | 2 cut(s) | 367, 1227 |
| HindII | GTYRAC | 2 cut(s) | 367, 1227 |
| HinfI | GANTC | 6 cut(s) | 239, 263, 373, 480, 525, 750 |
| HpaII | CCGG | 3 cut(s) | 334, 731, 998 |
| HphI | GGTGA | 2 cut(s) | 874, 1243 |
| Hpy166II | GTNNAC | 4 cut(s) | 367, 667, 1227, 1300 |
| Hpy188III | TCNNGA | 3 cut(s) | 38, 303, 505 |
| Hpy8I | GTNNAC | 4 cut(s) | 367, 667, 1227, 1300 |
| Hpy99I | CGWCG | 2 cut(s) | 263, 988 |
| HpyAV | CCTTC | 5 cut(s) | 170, 184, 442, 584, 877 |
| HpyCH4III | ACNGT | 2 cut(s) | 717, 1231 |
| HpyCH4IV | ACGT | 1 cut(s) | 903 |
| HpyCH4V | TGCA | 7 cut(s) | 295, 409, 571, 1023, 1032, 1081, 1242 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 352, 561, 872, 948, 1008, 1029, 1033, 1078, 1142 |
| HpyF3I | CTNAG | 2 cut(s) | 510, 1073 |
| HpySE526I | ACGT | 1 cut(s) | 903 |
| Hsp92I | GRCGYC | 1 cut(s) | 983 |
| Hsp92II | CATG | 3 cut(s) | 502, 1142, 1149 |
| HspAI | GCGC | 4 cut(s) | 277, 458, 805, 1328 |
| Kzo9I | GATC | 5 cut(s) | 34, 152, 397, 465, 606 |
| LmnI | GCTCC | 8 cut(s) | 148, 450, 525, 693, 740, 791, 1092, 1125 |
| Lsp1109I | GCAGC | 3 cut(s) | 199, 581, 1186 |
| LweI | GCATC | 3 cut(s) | 304, 1059, 1123 |
| MabI | ACCWGGT | 2 cut(s) | 582, 720 |
| MaeI | CTAG | 2 cut(s) | 234, 462 |
| MaeII | ACGT | 1 cut(s) | 903 |
| MaeIII | GTNAC | 2 cut(s) | 904, 931 |
| MalI | GATC | 5 cut(s) | 36, 154, 399, 467, 608 |
| MbiI | CCGCTC | 3 cut(s) | 536, 688, 1011 |
| MboI | GATC | 5 cut(s) | 34, 152, 397, 465, 606 |
| MboII | GAAGA | 5 cut(s) | 79, 82, 96, 283, 475 |
| MhlI | GDGCHC | 4 cut(s) | 334, 348, 737, 1004 |
| MlsI | TGGCCA | 2 cut(s) | 8, 1188 |
| MluCI | AATT | 4 cut(s) | 121, 223, 391, 1193 |
| MluNI | TGGCCA | 2 cut(s) | 8, 1188 |
| MlyI | GAGTC | 4 cut(s) | 248, 272, 534, 744 |
| Mox20I | TGGCCA | 2 cut(s) | 8, 1188 |
| MscI | TGGCCA | 2 cut(s) | 8, 1188 |
| MslI | CAYNNNNRTG | 2 cut(s) | 834, 1319 |
| Msp20I | TGGCCA | 2 cut(s) | 8, 1188 |
| MspI | CCGG | 3 cut(s) | 334, 731, 998 |
| MspR9I | CCNGG | 7 cut(s) | 334, 584, 722, 732, 998, 999, 1105 |
| Mva1269I | GAATGC | 2 cut(s) | 555, 685 |
| MvaI | CCWGG | 3 cut(s) | 584, 722, 1105 |
| MvnI | CGCG | 3 cut(s) | 458, 805, 833 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 352, 561, 872, 948, 1008, 1029, 1033, 1078, 1142 |
| NciI | CCSGG | 4 cut(s) | 334, 732, 998, 999 |
| NdeII | GATC | 5 cut(s) | 34, 152, 397, 465, 606 |
| NlaIII | CATG | 3 cut(s) | 502, 1142, 1149 |
| NmeAIII | GCCGAG | 1 cut(s) | 1228 |
| NmuCI | GTSAC | 1 cut(s) | 904 |
| PaeR7I | CTCGAG | 1 cut(s) | 503 |
| PasI | CCCWGGG | 1 cut(s) | 1104 |
| PceI | AGGCCT | 1 cut(s) | 1036 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 771 |
| PctI | GAATGC | 2 cut(s) | 555, 685 |
| PfeI | GAWTC | 2 cut(s) | 373, 480 |
| PkrI | GCNGC | 6 cut(s) | 48, 189, 192, 457, 596, 1201 |
| PleI | GAGTC | 4 cut(s) | 247, 271, 533, 744 |
| PpsI | GAGTC | 4 cut(s) | 247, 271, 533, 744 |
| Psp124BI | GAGCTC | 1 cut(s) | 348 |
| Psp6I | CCWGG | 3 cut(s) | 582, 720, 1103 |
| PspGI | CCWGG | 3 cut(s) | 582, 720, 1103 |
| PspOMI | GGGCCC | 2 cut(s) | 330, 1000 |
| PstI | CTGCAG | 1 cut(s) | 1034 |
| PstNI | CAGNNNCTG | 2 cut(s) | 721, 1029 |
| RsaI | GTAC | 1 cut(s) | 719 |
| RsaNI | GTAC | 1 cut(s) | 718 |
| RseI | CAYNNNNRTG | 2 cut(s) | 834, 1319 |
| Rsr2I | CGGWCCG | 1 cut(s) | 937 |
| RsrII | CGGWCCG | 1 cut(s) | 937 |
| SacI | GAGCTC | 1 cut(s) | 348 |
| SalI | GTCGAC | 1 cut(s) | 365 |
| SatI | GCNGC | 6 cut(s) | 47, 188, 191, 456, 595, 1200 |
| Sau3AI | GATC | 5 cut(s) | 34, 152, 397, 465, 606 |
| SbfI | CCTGCAGG | 1 cut(s) | 1034 |
| SchI | GAGTC | 4 cut(s) | 248, 272, 534, 744 |
| ScrFI | CCNGG | 7 cut(s) | 334, 584, 722, 732, 998, 999, 1105 |
| SdaI | CCTGCAGG | 1 cut(s) | 1034 |
| SduI | GDGCHC | 4 cut(s) | 334, 348, 737, 1004 |
| SexAI | ACCWGGT | 2 cut(s) | 582, 720 |
| SfaNI | GCATC | 3 cut(s) | 304, 1059, 1123 |
| SfcI | CTRYAG | 1 cut(s) | 1030 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1033 |
| Sfr274I | CTCGAG | 1 cut(s) | 503 |
| SinI | GGWCC | 6 cut(s) | 255, 300, 421, 724, 937, 1098 |
| SlaI | CTCGAG | 1 cut(s) | 503 |
| SmaI | CCCGGG | 1 cut(s) | 999 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 834, 1319 |
| SmlI | CTYRAG | 2 cut(s) | 449, 503 |
| SmoI | CTYRAG | 2 cut(s) | 449, 503 |
| SpeI | ACTAGT | 1 cut(s) | 233 |
| SrfI | GCCCGGGC | 1 cut(s) | 999 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1034 |
| Sse9I | AATT | 4 cut(s) | 121, 223, 391, 1193 |
| SseBI | AGGCCT | 1 cut(s) | 1036 |
| SspMI | CTAG | 2 cut(s) | 234, 462 |
| SstI | GAGCTC | 1 cut(s) | 348 |
| StuI | AGGCCT | 1 cut(s) | 1036 |
| StyD4I | CCNGG | 7 cut(s) | 332, 582, 720, 730, 996, 997, 1103 |
| StyI | CCWWGG | 2 cut(s) | 461, 1045 |
| TaaI | ACNGT | 2 cut(s) | 717, 1231 |
| TaiI | ACGT | 1 cut(s) | 906 |
| TaqI | TCGA | 4 cut(s) | 151, 342, 366, 504 |
| TaqII | GACCGA | 3 cut(s) | 272, 288, 1191 |
| TasI | AATT | 4 cut(s) | 121, 223, 391, 1193 |
| TauI | GCSGC | 3 cut(s) | 49, 193, 458 |
| TfiI | GAWTC | 2 cut(s) | 373, 480 |
| TscAI | CASTG | 3 cut(s) | 984, 1244, 1302 |
| TseFI | GTSAC | 1 cut(s) | 904 |
| TseI | GCWGC | 3 cut(s) | 187, 594, 1199 |
| Tsp45I | GTSAC | 1 cut(s) | 904 |
| TspDTI | ATGAA | 1 cut(s) | 1277 |
| TspGWI | ACGGA | 3 cut(s) | 126, 463, 950 |
| TspMI | CCCGGG | 1 cut(s) | 997 |
| TspRI | CASTG | 3 cut(s) | 984, 1244, 1302 |
| VpaK11BI | GGWCC | 6 cut(s) | 255, 300, 421, 724, 937, 1098 |
| XapI | RAATTY | 2 cut(s) | 391, 1193 |
| XhoI | CTCGAG | 1 cut(s) | 503 |
| XmaI | CCCGGG | 1 cut(s) | 997 |
| XmaJI | CCTAGG | 1 cut(s) | 461 |
| XmiI | GTMKAC | 1 cut(s) | 366 |
| XspI | CTAG | 2 cut(s) | 234, 462 |