Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8333233.1

Orthogroup ID

OG0011290

Physical Location & Seq

Genomic Coordinates Reverse (-)

169 .. 927

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8333233.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ctggtggaaggctgcctgactctaattcaagaataccaaaagcagaacaacttcacctacgactggatagtccgaacccgagtcgacgggtactggaacgccccactcgactcgaaattctttgtaccgggcaagtacctagtcccacccggttccaactatggcggactcaacgaccgactcggaatcggggacctcaacacctccacagtggccctctctcgcctctcgctcataccccagctcgacgctgctgggttgcaccagctcaactcggagacggcgttcaaggcccagctcaccacccaaggggttacttccgtcacaaaacgactcccgttttgcatagttacagaccgcaaatatgatttcccgccagcgcgttttggagttccggttgcagccctgtcgagcccaggccctttgagcggggcgaaatgcaggccttgcaagccggtgtgccaaggcccgtgcgtaggggacgtgatggagcgcctgttcaaagggtggagctggactgactgggccaacgggacgctccagctttgcgatgcgcatggggattgggagaagggttgggagaagatatttgatagagtagctgggaagaaaaagagtgccgagcgaaaacgagtttggagtttgacggtggacaagtgcattgctgattttaatcagatgagaaaccggactggaatctgggacacgccgcccgtggatgagatttgtaggataggagtcacttctggtcccaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

28.01

Weight (kDa)

8.94

Isoelectric Point (pI)

21.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76250
fragaria_vesca	FvH4_2g37560
malus_domestica	MD08G1003100.v1.1 MD15G1002800.v1.1
prunus_persica	Prupe.1G355100_v2.0.a1 Prupe.1G355100_v2.0.a1
pyrus_communis	pycom08g00260 pycom15g00170
rosa_chinensis	RchiOBHm_Chr6g0304171
rosa_laevigata	RLG00000011009
rosa_multiflora	Rmu_co8333233.1_g000001 Rmu_sc0017984.1_g000001 Rmu_ssc0000218.1_g000009
rosa_roxburghii	Rroxscaffold_7G00164000
rosa_rugosa	Rorug06G0328200
rosa_samantha	Rh6AG442300 Rh6BG460400 Rh6CG454500 Rh6DG441700
rosa_wichuraiana	Rw6G038340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
Acc16I	TGCGCA	1 cut(s)	555
AccBSI	CCGCTC	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	382
AciI	CCGC	5 cut(s)	165, 358, 374, 429, 710
AcsI	RAATTY	1 cut(s)	116
AfaI	GTAC	3 cut(s)	92, 126, 137
AfiI	CCNNNNNNNGG	4 cut(s)	63, 309, 428, 476
AgsI	TTSAA	3 cut(s)	29, 289, 502
AjiI	CACGTC	1 cut(s)	484
AjnI	CCWGG	1 cut(s)	415
AjuI	GAANNNNNNNTTGG	2 cut(s)	619, 651
AloI	GAACNNNNNNTCC	4 cut(s)	269, 301, 482, 514
AluBI	AGCT	6 cut(s)	244, 268, 298, 513, 544, 602
AluI	AGCT	6 cut(s)	244, 268, 298, 513, 544, 602
Alw26I	GTCTC	1 cut(s)	272
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	6 cut(s)	213, 291, 418, 443, 466, 525
ApeKI	GCWGC	3 cut(s)	12, 251, 401
ApoI	RAATTY	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	324, 356
Asp700I	GAANNNNTTC	1 cut(s)	50
AspLEI	GCGC	3 cut(s)	382, 495, 556
AspS9I	GGNCC	7 cut(s)	193, 214, 292, 419, 467, 525, 749
AsuC2I	CCSGG	2 cut(s)	129, 150
AsuHPI	GGTGA	2 cut(s)	46, 292
AvaI	CYCGRG	1 cut(s)	78
AvaII	GGWCC	2 cut(s)	193, 749
BanII	GRGCYC	1 cut(s)	416
BbvI	GCAGC	2 cut(s)	238, 413
BccI	CCATC	1 cut(s)	481
BceAI	ACGGC	1 cut(s)	297
BcgI	CGANNNNNNTGC	2 cut(s)	390, 424
BciT130I	CCWGG	1 cut(s)	417
BcnI	CCSGG	2 cut(s)	129, 150
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	140
BfoI	RGCGCY	1 cut(s)	496
BisI	GCNGC	4 cut(s)	13, 252, 402, 710
BlsI	GCNGC	4 cut(s)	14, 253, 403, 711
Bme1390I	CCNGG	3 cut(s)	129, 150, 417
Bme18I	GGWCC	2 cut(s)	193, 749
BmeT110I	CYCGRG	1 cut(s)	78
BmgBI	CACGTC	1 cut(s)	484
BmgT120I	GGNCC	7 cut(s)	193, 214, 292, 419, 467, 525, 749
BmiI	GGNNCC	3 cut(s)	154, 194, 751
BmrFI	CCNGG	3 cut(s)	129, 150, 417
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	1 cut(s)	541
BmuI	ACTGGG	1 cut(s)	532
BpmI	CTGGAG	1 cut(s)	524
BpuMI	CCSGG	2 cut(s)	129, 150
BsaBI	GATNNNNATC	1 cut(s)	672
BsaJI	CCNNGG	4 cut(s)	307, 415, 463, 714
BsaWI	WCCGGW	2 cut(s)	394, 687
BsaXI	ACNNNNNCTCC	6 cut(s)	269, 299, 381, 411, 482, 512
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 309, 428, 476
Bse118I	RCCGGY	1 cut(s)	454
Bse1I	ACTGG	4 cut(s)	68, 98, 527, 697
Bse3DI	GCAATG	1 cut(s)	660
Bse8I	GATNNNNATC	1 cut(s)	672
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	4 cut(s)	307, 415, 463, 714
BseGI	GGATG	1 cut(s)	724
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	4 cut(s)	63, 309, 428, 476
BseMI	GCAATG	1 cut(s)	660
BseNI	ACTGG	4 cut(s)	68, 98, 527, 697
BseXI	GCAGC	2 cut(s)	238, 413
BseYI	CCCAGC	4 cut(s)	240, 254, 294, 602
Bsh1236I	CGCG	1 cut(s)	382
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	6 cut(s)	215, 293, 420, 445, 468, 527
BsiEI	CGRYCG	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	5 cut(s)	128, 150, 395, 455, 688
BslFI	GGGAC	6 cut(s)	128, 206, 494, 547, 716, 735
BslI	CCNNNNNNNGG	4 cut(s)	63, 309, 428, 476
BsmAI	GTCTC	1 cut(s)	272
BsmBI	CGTCTC	1 cut(s)	272
BsmFI	GGGAC	6 cut(s)	128, 206, 494, 547, 716, 735
BsnI	GGCC	6 cut(s)	215, 293, 420, 445, 468, 527
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	416
BspACI	CCGC	5 cut(s)	165, 358, 374, 429, 710
BspANI	GGCC	6 cut(s)	215, 293, 420, 445, 468, 527
BspFNI	CGCG	1 cut(s)	382
BspLI	GGNNCC	3 cut(s)	154, 194, 751
BsrBI	CCGCTC	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	660
BsrFI	RCCGGY	1 cut(s)	454
BsrI	ACTGG	4 cut(s)	68, 98, 527, 697
BssAI	RCCGGY	1 cut(s)	454
BssECI	CCNNGG	4 cut(s)	307, 415, 463, 714
BssT1I	CCWWGG	2 cut(s)	307, 463
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	2 cut(s)	211, 649
BstAPI	GCANNNNNTGC	1 cut(s)	447
BstC8I	GCNNGC	3 cut(s)	378, 443, 452
BstDSI	CCRYGG	1 cut(s)	714
BstF5I	GGATG	1 cut(s)	724
BstFNI	CGCG	1 cut(s)	382
BstH2I	RGCGCY	1 cut(s)	496
BstHHI	GCGC	3 cut(s)	382, 495, 556
BstMAI	GTCTC	1 cut(s)	272
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	4 cut(s)	290, 426, 447, 451
BstNI	CCWGG	1 cut(s)	417
BstSCI	CCNGG	3 cut(s)	127, 148, 415
BstUI	CGCG	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	238, 413
BsuRI	GGCC	6 cut(s)	215, 293, 420, 445, 468, 527
BtgI	CCRYGG	1 cut(s)	714
BtgZI	GCGATG	1 cut(s)	564
BtrI	CACGTC	1 cut(s)	484
BtsCI	GGATG	1 cut(s)	724
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	3 cut(s)	378, 443, 452
CfoI	GCGC	3 cut(s)	382, 495, 556
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	7 cut(s)	193, 214, 292, 419, 467, 525, 749
CseI	GACGC	2 cut(s)	257, 544
Csp6I	GTAC	3 cut(s)	91, 125, 136
CviAII	CATG	1 cut(s)	557
CviQI	GTAC	3 cut(s)	91, 125, 136
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	307, 463
Eco147I	AGGCCT	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	416
Eco47I	GGWCC	2 cut(s)	193, 749
Eco88I	CYCGRG	1 cut(s)	78
EcoO109I	RGGNCCY	2 cut(s)	193, 419
EcoRII	CCWGG	1 cut(s)	415
EcoT14I	CCWWGG	2 cut(s)	307, 463
EcoT38I	GRGCYC	1 cut(s)	416
ErhI	CCWWGG	2 cut(s)	307, 463
Esp3I	CGTCTC	1 cut(s)	272
FaeI	CATG	1 cut(s)	560
FaiI	YATR	5 cut(s)	162, 236, 347, 366, 558
FaqI	GGGAC	6 cut(s)	128, 206, 494, 547, 716, 735
FatI	CATG	1 cut(s)	556
FauI	CCCGC	2 cut(s)	381, 422
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	13, 252, 402, 710
FokI	GGATG	1 cut(s)	731
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	4 cut(s)	13, 252, 402, 710
FspAI	RTGCGCAY	1 cut(s)	555
FspBI	CTAG	1 cut(s)	140
FspI	TGCGCA	1 cut(s)	555
GlaI	GCGC	3 cut(s)	381, 494, 555
GluI	GCNGC	4 cut(s)	13, 252, 402, 710
GsaI	CCCAGC	4 cut(s)	244, 258, 298, 606
GsuI	CTGGAG	1 cut(s)	524
HaeII	RGCGCY	1 cut(s)	496
HaeIII	GGCC	6 cut(s)	215, 293, 420, 445, 468, 527
HapII	CCGG	5 cut(s)	128, 150, 395, 455, 688
HgaI	GACGC	2 cut(s)	257, 544
HhaI	GCGC	3 cut(s)	382, 495, 556
Hin1II	CATG	1 cut(s)	560
Hin6I	GCGC	3 cut(s)	380, 493, 554
HinP1I	GCGC	3 cut(s)	380, 493, 554
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	9 cut(s)	19, 81, 110, 168, 180, 186, 333, 696, 738
HpaII	CCGG	5 cut(s)	128, 150, 395, 455, 688
HphI	GGTGA	2 cut(s)	46, 292
Hpy166II	GTNNAC	2 cut(s)	85, 652
Hpy188I	TCNGA	4 cut(s)	74, 185, 277, 678
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	2 cut(s)	85, 652
Hpy99I	CGWCG	2 cut(s)	89, 251
HpyAV	CCTTC	1 cut(s)	565
HpyCH4III	ACNGT	2 cut(s)	211, 649
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	6 cut(s)	262, 345, 401, 441, 450, 660
HpyF10VI	GCNNNNNNNGC	4 cut(s)	290, 426, 447, 451
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	1 cut(s)	560
HspAI	GCGC	3 cut(s)	380, 493, 554
LmnI	GCTCC	3 cut(s)	490, 510, 543
Lsp1109I	GCAGC	2 cut(s)	238, 413
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	4 cut(s)	313, 322, 349, 739
MbiI	CCGCTC	1 cut(s)	429
MboII	GAAGA	2 cut(s)	595, 619
MhlI	GDGCHC	1 cut(s)	416
MluCI	AATT	2 cut(s)	24, 116
MlyI	GAGTC	7 cut(s)	13, 90, 104, 162, 174, 327, 747
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	4 cut(s)	206, 214, 227, 236
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	1 cut(s)	672
MspI	CCGG	5 cut(s)	128, 150, 395, 455, 688
MspR9I	CCNGG	3 cut(s)	129, 150, 417
MvaI	CCWGG	1 cut(s)	417
MvnI	CGCG	1 cut(s)	382
MwoI	GCNNNNNNNGC	4 cut(s)	290, 426, 447, 451
NciI	CCSGG	2 cut(s)	129, 150
NlaIII	CATG	1 cut(s)	560
NlaIV	GGNNCC	3 cut(s)	154, 194, 751
NmeAIII	GCCGAG	1 cut(s)	646
NmuCI	GTSAC	2 cut(s)	322, 739
NsbI	TGCGCA	1 cut(s)	555
PceI	AGGCCT	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 281
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	186, 696
PkrI	GCNGC	4 cut(s)	14, 253, 403, 711
PleI	GAGTC	7 cut(s)	13, 89, 104, 162, 174, 327, 746
PpsI	GAGTC	7 cut(s)	13, 89, 104, 162, 174, 327, 746
PpuMI	RGGWCCY	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	415
PspFI	CCCAGC	4 cut(s)	240, 254, 294, 602
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	3 cut(s)	154, 194, 751
PspPI	GGNCC	7 cut(s)	193, 214, 292, 419, 467, 525, 749
PspPPI	RGGWCCY	1 cut(s)	193
RsaI	GTAC	3 cut(s)	92, 126, 137
RsaNI	GTAC	3 cut(s)	91, 125, 136
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	4 cut(s)	13, 252, 402, 710
Sau96I	GGNCC	7 cut(s)	193, 214, 292, 419, 467, 525, 749
SchI	GAGTC	7 cut(s)	13, 90, 104, 162, 174, 327, 747
ScrFI	CCNGG	3 cut(s)	129, 150, 417
SduI	GDGCHC	1 cut(s)	416
SfaNI	GCATC	1 cut(s)	541
SinI	GGWCC	2 cut(s)	193, 749
Sse9I	AATT	2 cut(s)	24, 116
SseBI	AGGCCT	1 cut(s)	445
SsiI	CCGC	5 cut(s)	165, 358, 374, 429, 710
SspMI	CTAG	1 cut(s)	140
StuI	AGGCCT	1 cut(s)	445
StyD4I	CCNGG	3 cut(s)	127, 148, 415
StyI	CCWWGG	2 cut(s)	307, 463
TaaI	ACNGT	2 cut(s)	211, 649
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	5 cut(s)	84, 108, 113, 246, 410
TaqII	GACCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	24, 116
TauI	GCSGC	1 cut(s)	712
TfiI	GAWTC	2 cut(s)	186, 696
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	2 cut(s)	322, 739
TseI	GCWGC	3 cut(s)	12, 251, 401
Tsp45I	GTSAC	2 cut(s)	322, 739
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	216
VpaK11BI	GGWCC	2 cut(s)	193, 749
XapI	RAATTY	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.