Rmu_sc0017984.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017984.1
OG0011290
Physical Location & Seq
Forward (+)
1 .. 1789
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017984.1_g000001.1.cds

Sequence Viewer

Length: 780 bp
ggtcttttgcaatatttcaatctggtggaaggctgcctgactctaattcaagaataccaaaagcagaacaacttcacctacgactggatagtccgaacccgagtcgacgggtactggaacgccccactcgactcgaaattctttgtaccgggcaagtacctagtcccacccggttccaactatggcggactcaacgaccgacttggaatcggggacctcaacacctccacagtggccctctctcgcctctcgctcataccccagctcgacgctgctgggttgcaccagctcaactcggagacggcgttcaaggcccagctcaccacccaaggggttacttccgtcacaaaacgactcccgttttgcatagttacagaccgcaaatatgatttcccgccagcgcgttttggagttccggttgcagccctgtcgagcccaggccctttgagcggggcgaaatgcaggccttgcaagccggtgtgccaaggcccgtgcgtaggggacgtgatggagcgcctgttcaaagggtggagctggactgactgggccaacgggacgctccagctttgcgatgcgcatggggattgggagaagggttgggagaagatatttgatagagtagctgggaagaaaaagagtgccgagcgaaaacgagtttggagtttgacggtggacaagtgcattgctgattttaatcagatgagaaaccggactggaatctgggacacgccgcccgtggatgagatttgtaggataggagtcacttctggtcccaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

28.85

Weight (kDa)

8.93

Isoelectric Point (pI)

21.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
Acc16I TGCGCA 1 cut(s) 576
AccBSI CCGCTC 1 cut(s) 450
AccI GTMKAC 1 cut(s) 105
AccII CGCG 1 cut(s) 403
AciI CCGC 5 cut(s) 186, 379, 395, 450, 731
AcsI RAATTY 1 cut(s) 137
AfaI GTAC 3 cut(s) 113, 147, 158
AfiI CCNNNNNNNGG 4 cut(s) 84, 330, 449, 497
AgsI TTSAA 4 cut(s) 19, 50, 310, 523
AjiI CACGTC 1 cut(s) 505
AjnI CCWGG 1 cut(s) 436
AjuI GAANNNNNNNTTGG 2 cut(s) 640, 672
AloI GAACNNNNNNTCC 4 cut(s) 290, 322, 503, 535
AluBI AGCT 6 cut(s) 265, 289, 319, 534, 565, 623
AluI AGCT 6 cut(s) 265, 289, 319, 534, 565, 623
Alw26I GTCTC 1 cut(s) 293
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 6 cut(s) 234, 312, 439, 464, 487, 546
ApeKI GCWGC 3 cut(s) 33, 272, 422
ApoI RAATTY 1 cut(s) 137
ArsI GACNNNNNNTTYG 2 cut(s) 345, 377
Asp700I GAANNNNTTC 1 cut(s) 71
AspLEI GCGC 3 cut(s) 403, 516, 577
AspS9I GGNCC 7 cut(s) 214, 235, 313, 440, 488, 546, 770
AsuC2I CCSGG 2 cut(s) 150, 171
AsuHPI GGTGA 2 cut(s) 67, 313
AvaI CYCGRG 1 cut(s) 99
AvaII GGWCC 2 cut(s) 214, 770
BanII GRGCYC 1 cut(s) 437
BbvI GCAGC 3 cut(s) 20, 259, 434
BccI CCATC 1 cut(s) 502
BceAI ACGGC 1 cut(s) 318
BcgI CGANNNNNNTGC 2 cut(s) 411, 445
BciT130I CCWGG 1 cut(s) 438
BcnI CCSGG 2 cut(s) 150, 171
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 1 cut(s) 161
BfoI RGCGCY 1 cut(s) 517
BisI GCNGC 4 cut(s) 34, 273, 423, 731
BlsI GCNGC 4 cut(s) 35, 274, 424, 732
Bme1390I CCNGG 3 cut(s) 150, 171, 438
Bme18I GGWCC 2 cut(s) 214, 770
BmeT110I CYCGRG 1 cut(s) 99
BmgBI CACGTC 1 cut(s) 505
BmgT120I GGNCC 7 cut(s) 214, 235, 313, 440, 488, 546, 770
BmiI GGNNCC 3 cut(s) 175, 215, 772
BmrFI CCNGG 3 cut(s) 150, 171, 438
BmrI ACTGGG 1 cut(s) 553
BmsI GCATC 1 cut(s) 562
BmuI ACTGGG 1 cut(s) 553
BpmI CTGGAG 1 cut(s) 545
BpuMI CCSGG 2 cut(s) 150, 171
BsaBI GATNNNNATC 1 cut(s) 693
BsaJI CCNNGG 4 cut(s) 328, 436, 484, 735
BsaWI WCCGGW 2 cut(s) 415, 708
BsaXI ACNNNNNCTCC 6 cut(s) 290, 320, 402, 432, 503, 533
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 330, 449, 497
Bse118I RCCGGY 1 cut(s) 475
Bse1I ACTGG 4 cut(s) 89, 119, 548, 718
Bse3DI GCAATG 1 cut(s) 681
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 4 cut(s) 328, 436, 484, 735
BseGI GGATG 1 cut(s) 745
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 4 cut(s) 84, 330, 449, 497
BseMI GCAATG 1 cut(s) 681
BseNI ACTGG 4 cut(s) 89, 119, 548, 718
BseXI GCAGC 3 cut(s) 20, 259, 434
BseYI CCCAGC 4 cut(s) 261, 275, 315, 623
Bsh1236I CGCG 1 cut(s) 403
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 6 cut(s) 236, 314, 441, 466, 489, 548
BsiEI CGRYCG 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 99
BsiSI CCGG 5 cut(s) 149, 171, 416, 476, 709
BslFI GGGAC 6 cut(s) 149, 227, 515, 568, 737, 756
BslI CCNNNNNNNGG 4 cut(s) 84, 330, 449, 497
BsmAI GTCTC 1 cut(s) 293
BsmBI CGTCTC 1 cut(s) 293
BsmFI GGGAC 6 cut(s) 149, 227, 515, 568, 737, 756
BsnI GGCC 6 cut(s) 236, 314, 441, 466, 489, 548
BsoBI CYCGRG 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 437
BspACI CCGC 5 cut(s) 186, 379, 395, 450, 731
BspANI GGCC 6 cut(s) 236, 314, 441, 466, 489, 548
BspFNI CGCG 1 cut(s) 403
BspLI GGNNCC 3 cut(s) 175, 215, 772
BsrBI CCGCTC 1 cut(s) 450
BsrDI GCAATG 1 cut(s) 681
BsrFI RCCGGY 1 cut(s) 475
BsrI ACTGG 4 cut(s) 89, 119, 548, 718
BssAI RCCGGY 1 cut(s) 475
BssECI CCNNGG 4 cut(s) 328, 436, 484, 735
BssT1I CCWWGG 2 cut(s) 328, 484
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 2 cut(s) 232, 670
BstAPI GCANNNNNTGC 1 cut(s) 468
BstC8I GCNNGC 3 cut(s) 399, 464, 473
BstDSI CCRYGG 1 cut(s) 735
BstF5I GGATG 1 cut(s) 745
BstFNI CGCG 1 cut(s) 403
BstH2I RGCGCY 1 cut(s) 517
BstHHI GCGC 3 cut(s) 403, 516, 577
BstMAI GTCTC 1 cut(s) 293
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 4 cut(s) 311, 447, 468, 472
BstNI CCWGG 1 cut(s) 438
BstSCI CCNGG 3 cut(s) 148, 169, 436
BstUI CGCG 1 cut(s) 403
BstV1I GCAGC 3 cut(s) 20, 259, 434
BsuRI GGCC 6 cut(s) 236, 314, 441, 466, 489, 548
BtgI CCRYGG 1 cut(s) 735
BtgZI GCGATG 1 cut(s) 585
BtrI CACGTC 1 cut(s) 505
BtsCI GGATG 1 cut(s) 745
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 3 cut(s) 399, 464, 473
CfoI GCGC 3 cut(s) 403, 516, 577
Cfr10I RCCGGY 1 cut(s) 475
Cfr13I GGNCC 7 cut(s) 214, 235, 313, 440, 488, 546, 770
CseI GACGC 2 cut(s) 278, 565
Csp6I GTAC 3 cut(s) 112, 146, 157
CviAII CATG 1 cut(s) 578
CviQI GTAC 3 cut(s) 112, 146, 157
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
EciI GGCGGA 1 cut(s) 201
Eco130I CCWWGG 2 cut(s) 328, 484
Eco147I AGGCCT 1 cut(s) 466
Eco24I GRGCYC 1 cut(s) 437
Eco47I GGWCC 2 cut(s) 214, 770
Eco88I CYCGRG 1 cut(s) 99
EcoO109I RGGNCCY 2 cut(s) 214, 440
EcoRII CCWGG 1 cut(s) 436
EcoT14I CCWWGG 2 cut(s) 328, 484
EcoT38I GRGCYC 1 cut(s) 437
ErhI CCWWGG 2 cut(s) 328, 484
Esp3I CGTCTC 1 cut(s) 293
FaeI CATG 1 cut(s) 581
FaiI YATR 5 cut(s) 183, 257, 368, 387, 579
FaqI GGGAC 6 cut(s) 149, 227, 515, 568, 737, 756
FatI CATG 1 cut(s) 577
FauI CCCGC 2 cut(s) 402, 443
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 4 cut(s) 34, 273, 423, 731
FokI GGATG 1 cut(s) 752
FriOI GRGCYC 1 cut(s) 437
Fsp4HI GCNGC 4 cut(s) 34, 273, 423, 731
FspAI RTGCGCAY 1 cut(s) 576
FspBI CTAG 1 cut(s) 161
FspI TGCGCA 1 cut(s) 576
GlaI GCGC 3 cut(s) 402, 515, 576
GluI GCNGC 4 cut(s) 34, 273, 423, 731
GsaI CCCAGC 4 cut(s) 265, 279, 319, 627
GsuI CTGGAG 1 cut(s) 545
HaeII RGCGCY 1 cut(s) 517
HaeIII GGCC 6 cut(s) 236, 314, 441, 466, 489, 548
HapII CCGG 5 cut(s) 149, 171, 416, 476, 709
HgaI GACGC 2 cut(s) 278, 565
HhaI GCGC 3 cut(s) 403, 516, 577
Hin1II CATG 1 cut(s) 581
Hin6I GCGC 3 cut(s) 401, 514, 575
HinP1I GCGC 3 cut(s) 401, 514, 575
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 8 cut(s) 40, 102, 131, 189, 207, 354, 717, 759
HpaII CCGG 5 cut(s) 149, 171, 416, 476, 709
HphI GGTGA 2 cut(s) 67, 313
Hpy166II GTNNAC 2 cut(s) 106, 673
Hpy188I TCNGA 3 cut(s) 95, 298, 699
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 2 cut(s) 106, 673
Hpy99I CGWCG 2 cut(s) 110, 272
HpyAV CCTTC 2 cut(s) 23, 586
HpyCH4III ACNGT 2 cut(s) 232, 670
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 7 cut(s) 10, 283, 366, 422, 462, 471, 681
HpyF10VI GCNNNNNNNGC 4 cut(s) 311, 447, 468, 472
HpySE526I ACGT 1 cut(s) 504
Hsp92II CATG 1 cut(s) 581
HspAI GCGC 3 cut(s) 401, 514, 575
LmnI GCTCC 3 cut(s) 511, 531, 564
Lsp1109I GCAGC 3 cut(s) 20, 259, 434
LweI GCATC 1 cut(s) 562
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 4 cut(s) 334, 343, 370, 760
MbiI CCGCTC 1 cut(s) 450
MboII GAAGA 2 cut(s) 616, 640
MhlI GDGCHC 1 cut(s) 437
MluCI AATT 2 cut(s) 45, 137
MlyI GAGTC 6 cut(s) 34, 111, 125, 183, 348, 768
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 4 cut(s) 227, 235, 248, 257
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 1 cut(s) 693
MspI CCGG 5 cut(s) 149, 171, 416, 476, 709
MspR9I CCNGG 3 cut(s) 150, 171, 438
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 1 cut(s) 403
MwoI GCNNNNNNNGC 4 cut(s) 311, 447, 468, 472
NciI CCSGG 2 cut(s) 150, 171
NlaIII CATG 1 cut(s) 581
NlaIV GGNNCC 3 cut(s) 175, 215, 772
NmeAIII GCCGAG 1 cut(s) 667
NmuCI GTSAC 2 cut(s) 343, 760
NsbI TGCGCA 1 cut(s) 576
PceI AGGCCT 1 cut(s) 466
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 302
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 207, 717
PkrI GCNGC 4 cut(s) 35, 274, 424, 732
PleI GAGTC 6 cut(s) 34, 110, 125, 183, 348, 767
PpsI GAGTC 6 cut(s) 34, 110, 125, 183, 348, 767
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 436
PspFI CCCAGC 4 cut(s) 261, 275, 315, 623
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 3 cut(s) 175, 215, 772
PspPI GGNCC 7 cut(s) 214, 235, 313, 440, 488, 546, 770
PspPPI RGGWCCY 1 cut(s) 214
RsaI GTAC 3 cut(s) 113, 147, 158
RsaNI GTAC 3 cut(s) 112, 146, 157
SalI GTCGAC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 693
SatI GCNGC 4 cut(s) 34, 273, 423, 731
Sau96I GGNCC 7 cut(s) 214, 235, 313, 440, 488, 546, 770
SchI GAGTC 6 cut(s) 34, 111, 125, 183, 348, 768
ScrFI CCNGG 3 cut(s) 150, 171, 438
SduI GDGCHC 1 cut(s) 437
SfaNI GCATC 1 cut(s) 562
SinI GGWCC 2 cut(s) 214, 770
Sse9I AATT 2 cut(s) 45, 137
SseBI AGGCCT 1 cut(s) 466
SsiI CCGC 5 cut(s) 186, 379, 395, 450, 731
SspI AATATT 1 cut(s) 14
SspMI CTAG 1 cut(s) 161
StuI AGGCCT 1 cut(s) 466
StyD4I CCNGG 3 cut(s) 148, 169, 436
StyI CCWWGG 2 cut(s) 328, 484
TaaI ACNGT 2 cut(s) 232, 670
TaiI ACGT 1 cut(s) 507
TaqI TCGA 5 cut(s) 105, 129, 134, 267, 431
TaqII GACCGA 1 cut(s) 213
TasI AATT 2 cut(s) 45, 137
TauI GCSGC 1 cut(s) 733
TfiI GAWTC 2 cut(s) 207, 717
Tru1I TTAA 1 cut(s) 693
Tru9I TTAA 1 cut(s) 693
TscAI CASTG 1 cut(s) 237
TseFI GTSAC 2 cut(s) 343, 760
TseI GCWGC 3 cut(s) 33, 272, 422
Tsp45I GTSAC 2 cut(s) 343, 760
TspGWI ACGGA 1 cut(s) 331
TspRI CASTG 1 cut(s) 237
VpaK11BI GGWCC 2 cut(s) 214, 770
XapI RAATTY 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 105
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.