Prupe.1G521700_v2.0.a1

PCO_ADO

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018048
Physical Location & Seq
Reverse (-)
42777625 .. 42779101
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G521700.1

Sequence Viewer

Length: 753 bp
ATGGAAACCAACTGTAGAATGCAGAAAAGCAAAATCCAAACGCTGTATGAAGCCTGCAATCTTTTATTTTCCCAGAAAATGCTCCCAACTTCCCAACAAGTTCAATGGCTGAAAAATTTCCTGGGCACGTTTAAAGCAATAGATGTTGGAATTGATGAATTTGGTTTATGTGGATCGCCATCTACTAGCCCAAGGAGAGATAAGGGACTGATCTGTGGGCAAAGCATCTCCCAAATCACTTACATTCACATTCATGAATGTCACCATTTCTCTATCGGAGTGTTTTGTTTCCCGGCTGGAGCAACACTTCCCCTTCATGATCACCCTGGAATGACAGTCTTTAGCAAACTCCTTTATGGTTCATGTTATGTTAAAGCTTATGATTGGATCAACGGAGGAGCTACTTCAGGCTTCAGAACATTTGGATTGGCAGGCAAGGTTTTAGATGCCGTTATGAGGGCACCATGTGAGACTAGTGTACTATTTCCGACAAGTGGAGGGAACATTCATTCTTTTAGTGCAGTAACTCCCTGTGCTATCTTGGATGTATTGGCTCCACCTTACTCTGAGGAGCTTGGCAGGCCTTCTACTTATTTCTTGGAATTTCCTGTTTCTTCTCTTCCTGGATATGCAATGCTTGAGGAAGGAGAGCTGCAAGATGATCTGGTGGTTGCTGGAGCACCATATCTTGGCCCTCCTATTGATGATGCTGGCATTGGCTGTTGTTGCCTTCTTGACTTTGCCAGTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008152 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00430 ko01100 map00430 map01100
Pfam Domains
Protein Families
PCO_ADO

Protein Analysis

251

Amino Acids

27.05

Weight (kDa)

5.27

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018048)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g36720
malus_domestica MD15G1373300.v1.1
prunus_persica Prupe.1G521700_v2.0.a1
pyrus_communis pycom15g33420
rosa_chinensis RchiOBHm_Chr7g0242701
rosa_laevigata RLG00000000886
rosa_roxburghii Rroxscaffold_3G00222570
rosa_rugosa Rorug07G0316400
rosa_samantha Rh7AG471500 Rh7DG457000
rosa_wichuraiana Rw7G039220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 460
AccB7I CCANNNNNTGG 1 cut(s) 689
AclWI GGATC 2 cut(s) 181, 395
AcsI RAATTY 3 cut(s) 115, 158, 602
AcuI CTGAAG 2 cut(s) 390, 397
AdeI CACNNNGTG 1 cut(s) 467
AfaI GTAC 1 cut(s) 480
AfiI CCNNNNNNNGG 3 cut(s) 456, 494, 689
AgsI TTSAA 1 cut(s) 104
AhlI ACTAGT 1 cut(s) 473
AjnI CCWGG 3 cut(s) 120, 325, 622
AluBI AGCT 4 cut(s) 377, 401, 574, 652
AluI AGCT 4 cut(s) 377, 401, 574, 652
Alw21I GWGCWC 1 cut(s) 682
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 2 cut(s) 181, 395
AoxI GGCC 2 cut(s) 581, 691
ApeKI GCWGC 1 cut(s) 652
ApoI RAATTY 3 cut(s) 115, 158, 602
Asp700I GAANNNNTTC 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 692
AsuC2I CCSGG 1 cut(s) 293
AsuHPI GGTGA 2 cut(s) 254, 314
BaeGI GKGCMC 2 cut(s) 128, 463
BanI GGYRCC 1 cut(s) 460
Bbv12I GWGCWC 1 cut(s) 682
BbvI GCAGC 1 cut(s) 639
BccI CCATC 1 cut(s) 187
BceAI ACGGC 1 cut(s) 434
BciT130I CCWGG 3 cut(s) 122, 327, 624
BclI TGATCA 1 cut(s) 319
BcnI CCSGG 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 464
BcuI ACTAGT 1 cut(s) 473
BfaI CTAG 2 cut(s) 186, 474
BfmI CTRYAG 1 cut(s) 13
BisI GCNGC 1 cut(s) 653
BlsI GCNGC 1 cut(s) 654
Bme1390I CCNGG 4 cut(s) 122, 293, 327, 624
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 2 cut(s) 462, 555
BmrFI CCNGG 4 cut(s) 122, 293, 327, 624
BmsI GCATC 3 cut(s) 234, 436, 697
BpmI CTGGAG 2 cut(s) 318, 696
BpuEI CTTGAG 1 cut(s) 659
BpuMI CCSGG 1 cut(s) 293
BsaBI GATNNNNATC 1 cut(s) 178
BsaJI CCNNGG 3 cut(s) 121, 191, 325
Bsc4I CCNNNNNNNGG 3 cut(s) 456, 494, 689
Bse1I ACTGG 1 cut(s) 744
Bse3DI GCAATG 1 cut(s) 639
Bse8I GATNNNNATC 1 cut(s) 178
BseBI CCWGG 3 cut(s) 122, 327, 624
BseDI CCNNGG 3 cut(s) 121, 191, 325
BseGI GGATG 1 cut(s) 550
BseJI GATNNNNATC 1 cut(s) 178
BseLI CCNNNNNNNGG 3 cut(s) 456, 494, 689
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 1 cut(s) 558
BseNI ACTGG 1 cut(s) 744
BseRI GAGGAG 2 cut(s) 411, 584
BseSI GKGCMC 2 cut(s) 128, 463
BseXI GCAGC 1 cut(s) 639
BsgI GTGCAG 1 cut(s) 540
BshFI GGCC 2 cut(s) 583, 693
BshNI GGYRCC 1 cut(s) 460
BsiHKAI GWGCWC 1 cut(s) 682
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 3 cut(s) 456, 494, 689
BsmAI GTCTC 1 cut(s) 464
BsmFI GGGAC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 2 cut(s) 583, 693
Bsp1286I GDGCHC 3 cut(s) 128, 463, 682
Bsp143I GATC 5 cut(s) 173, 210, 319, 387, 661
BspANI GGCC 2 cut(s) 583, 693
BspCNI CTCAG 1 cut(s) 559
BspHI TCATGA 2 cut(s) 253, 316
BspLI GGNNCC 2 cut(s) 462, 555
BspPI GGATC 2 cut(s) 181, 395
BspT107I GGYRCC 1 cut(s) 460
BsrDI GCAATG 1 cut(s) 639
BsrI ACTGG 1 cut(s) 744
BssECI CCNNGG 3 cut(s) 121, 191, 325
BssMI GATC 5 cut(s) 173, 210, 319, 387, 661
BssT1I CCWWGG 1 cut(s) 191
Bst2UI CCWGG 3 cut(s) 122, 327, 624
Bst4CI ACNGT 2 cut(s) 14, 337
Bst6I CTCTTC 1 cut(s) 624
BstC8I GCNNGC 4 cut(s) 55, 433, 581, 712
BstDEI CTNAG 1 cut(s) 567
BstF5I GGATG 1 cut(s) 550
BstKTI GATC 5 cut(s) 176, 213, 322, 390, 664
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 5 cut(s) 173, 210, 319, 387, 661
BstMWI GCNNNNNNNGC 2 cut(s) 580, 726
BstNI CCWGG 3 cut(s) 122, 327, 624
BstSCI CCNGG 4 cut(s) 120, 291, 325, 622
BstSFI CTRYAG 1 cut(s) 13
BstSLI GKGCMC 2 cut(s) 128, 463
BstV1I GCAGC 1 cut(s) 639
BsuRI GGCC 2 cut(s) 583, 693
BtsCI GGATG 1 cut(s) 550
BtsIMutI CAGTG 1 cut(s) 751
Cac8I GCNNGC 4 cut(s) 55, 433, 581, 712
CciI TCATGA 2 cut(s) 253, 316
Cfr13I GGNCC 1 cut(s) 692
Csp6I GTAC 1 cut(s) 479
CviAII CATG 4 cut(s) 254, 317, 363, 465
CviQI GTAC 1 cut(s) 479
DdeI CTNAG 1 cut(s) 567
DpnI GATC 5 cut(s) 175, 212, 321, 389, 663
DpnII GATC 5 cut(s) 173, 210, 319, 387, 661
DraI TTTAAA 1 cut(s) 133
DraIII CACNNNGTG 1 cut(s) 467
Eam1104I CTCTTC 1 cut(s) 624
EarI CTCTTC 1 cut(s) 624
Eco130I CCWWGG 1 cut(s) 191
Eco147I AGGCCT 1 cut(s) 583
Eco57I CTGAAG 2 cut(s) 390, 397
EcoRII CCWGG 3 cut(s) 120, 325, 622
EcoT14I CCWWGG 1 cut(s) 191
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 4 cut(s) 257, 320, 366, 468
FaqI GGGAC 1 cut(s) 219
FatI CATG 4 cut(s) 253, 316, 362, 464
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 1 cut(s) 653
FokI GGATG 1 cut(s) 557
Fsp4HI GCNGC 1 cut(s) 653
FspBI CTAG 2 cut(s) 186, 474
GluI GCNGC 1 cut(s) 653
GsuI CTGGAG 2 cut(s) 318, 696
HaeIII GGCC 2 cut(s) 583, 693
HapII CCGG 1 cut(s) 293
Hin1II CATG 4 cut(s) 257, 320, 366, 468
HindIII AAGCTT 1 cut(s) 375
HpaII CCGG 1 cut(s) 293
HphI GGTGA 2 cut(s) 254, 314
Hpy166II GTNNAC 1 cut(s) 479
Hpy188I TCNGA 4 cut(s) 278, 416, 489, 568
Hpy188III TCNNGA 3 cut(s) 254, 317, 734
Hpy8I GTNNAC 1 cut(s) 479
HpyAV CCTTC 4 cut(s) 323, 594, 638, 740
HpyCH4III ACNGT 2 cut(s) 14, 337
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 5 cut(s) 22, 57, 521, 632, 655
HpyF10VI GCNNNNNNNGC 2 cut(s) 580, 726
HpyF3I CTNAG 1 cut(s) 567
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 4 cut(s) 257, 320, 366, 468
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 5 cut(s) 173, 210, 319, 387, 661
LmnI GCTCC 6 cut(s) 87, 299, 398, 559, 571, 677
Lsp1109I GCAGC 1 cut(s) 639
LweI GCATC 3 cut(s) 234, 436, 697
MaeI CTAG 2 cut(s) 186, 474
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 2 cut(s) 260, 523
MalI GATC 5 cut(s) 175, 212, 321, 389, 663
MboI GATC 5 cut(s) 173, 210, 319, 387, 661
MboII GAAGA 2 cut(s) 606, 611
MhlI GDGCHC 3 cut(s) 128, 463, 682
MluCI AATT 4 cut(s) 115, 150, 158, 602
MmeI TCCRAC 2 cut(s) 127, 512
MnlI CCTC 6 cut(s) 389, 450, 491, 562, 634, 705
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 2 cut(s) 132, 372
MslI CAYNNNNRTG 1 cut(s) 252
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 4 cut(s) 122, 293, 327, 624
Mva1269I GAATGC 1 cut(s) 24
MvaI CCWGG 3 cut(s) 122, 327, 624
MwoI GCNNNNNNNGC 2 cut(s) 580, 726
NciI CCSGG 1 cut(s) 293
NdeII GATC 5 cut(s) 173, 210, 319, 387, 661
NlaIII CATG 4 cut(s) 257, 320, 366, 468
NlaIV GGNNCC 2 cut(s) 462, 555
NmuCI GTSAC 1 cut(s) 260
PagI TCATGA 2 cut(s) 253, 316
PceI AGGCCT 1 cut(s) 583
PctI GAATGC 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 689
PfoI TCCNGGA 1 cut(s) 622
PkrI GCNGC 1 cut(s) 654
Psp6I CCWGG 3 cut(s) 120, 325, 622
PspGI CCWGG 3 cut(s) 120, 325, 622
PspN4I GGNNCC 2 cut(s) 462, 555
PspPI GGNCC 1 cut(s) 692
RsaI GTAC 1 cut(s) 480
RsaNI GTAC 1 cut(s) 479
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 2 cut(s) 132, 372
SatI GCNGC 1 cut(s) 653
Sau3AI GATC 5 cut(s) 173, 210, 319, 387, 661
Sau96I GGNCC 1 cut(s) 692
ScrFI CCNGG 4 cut(s) 122, 293, 327, 624
SduI GDGCHC 3 cut(s) 128, 463, 682
SetI ASST 7 cut(s) 131, 379, 403, 441, 562, 576, 654
SfaNI GCATC 3 cut(s) 234, 436, 697
SfcI CTRYAG 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
SpeI ACTAGT 1 cut(s) 473
Sse9I AATT 4 cut(s) 115, 150, 158, 602
SseBI AGGCCT 1 cut(s) 583
SspMI CTAG 2 cut(s) 186, 474
StuI AGGCCT 1 cut(s) 583
StyD4I CCNGG 4 cut(s) 120, 291, 325, 622
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 2 cut(s) 14, 337
TaiI ACGT 1 cut(s) 131
TasI AATT 4 cut(s) 115, 150, 158, 602
TatI WGTACW 1 cut(s) 478
Tru1I TTAA 2 cut(s) 132, 372
Tru9I TTAA 2 cut(s) 132, 372
TscAI CASTG 1 cut(s) 751
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 1 cut(s) 652
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 7 cut(s) 63, 171, 242, 270, 305, 351, 497
TspGWI ACGGA 1 cut(s) 408
TspRI CASTG 1 cut(s) 751
Van91I CCANNNNNTGG 1 cut(s) 689
XapI RAATTY 3 cut(s) 115, 158, 602
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 2 cut(s) 186, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.