Rh7AG471500

PCO_ADO

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0018048
Physical Location & Seq
Forward (+)
65372439 .. 65373702
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG471500.1

Sequence Viewer

Length: 696 bp
ATGCTATACGAAGCCTGTAGGGTTATATTTTCTCAGAAAGAGCTTCCAACTTTCAAAGAAATTCACTGGCTCAAAGATTTCCTGGGCACATTTGAAGCAATAGATTTTGGAATCGATGAACATGGCTTGTGTGGATCTCCATCTTCTACTCCAAAGAGTGATAAGGGATTGATTTGTGGACAAGGCATCTCCCAGATCACTTACATTCATGTTTATGAATGTGAACAATTCTCTATCGGCGTGTTTTGTTTTCCGGCGGGAGGGATGCTTCCGCTTCATGATCACCCTGGAATGACCGTGTTTAGCAAACTCCTTTATGGTTCTTGTTATGTTAAAGCTTACGATTGGGTGAAGGTCGAGAGTTCTACTGGCTTCCCAACATTTGGATTAGGAGGCAAGGTTTTGGATGGCTTAATGAGTGTTCCATGTGAAACTTCTGTTCTATTTCCAAAAAGTGGTGGAAATATTCACGCTTTTACTGCGTTAACTCCTTGTGCGATCTTGGATGTATTGACTCCACCATATTCTGAGGAGCTTGGGAGGCCTTCTACTTACTTCATGGAATTTCCTATTCCTTCCTTGCCAGGCTATACGATCCTTGAGGAACGAGACCTACCGGATGACCTAGTAGTTGAAGGAGCACCATATCTTGGCCCTCCTATTGAAGCTGATGATGATGACAACGACCATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008152 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00430 ko01100 map00430 map01100
Pfam Domains
Protein Families
PCO_ADO

Protein Analysis

231

Amino Acids

25.34

Weight (kDa)

4.48

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCO_ADO PF07847 61 - 221 1.3e-55 PCO_ADO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018048)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g36720
malus_domestica MD15G1373300.v1.1
prunus_persica Prupe.1G521700_v2.0.a1
pyrus_communis pycom15g33420
rosa_chinensis RchiOBHm_Chr7g0242701
rosa_laevigata RLG00000000886
rosa_roxburghii Rroxscaffold_3G00222570
rosa_rugosa Rorug07G0316400
rosa_samantha Rh7AG471500 Rh7DG457000
rosa_wichuraiana Rw7G039220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 383, 455, 650
AciI CCGC 2 cut(s) 257, 272
AclWI GGATC 2 cut(s) 142, 589
AcsI RAATTY 2 cut(s) 60, 563
AfiI CCNNNNNNNGG 4 cut(s) 260, 383, 455, 650
AgsI TTSAA 4 cut(s) 55, 95, 635, 665
AjnI CCWGG 3 cut(s) 81, 286, 583
AluBI AGCT 4 cut(s) 43, 338, 535, 668
AluI AGCT 4 cut(s) 43, 338, 535, 668
Alw21I GWGCWC 1 cut(s) 643
Alw26I GTCTC 1 cut(s) 603
AlwI GGATC 2 cut(s) 142, 589
AoxI GGCC 2 cut(s) 542, 652
ApoI RAATTY 2 cut(s) 60, 563
AspS9I GGNCC 1 cut(s) 653
AsuHPI GGTGA 2 cut(s) 275, 361
BaeGI GKGCMC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 643
BccI CCATC 2 cut(s) 148, 401
BciT130I CCWGG 3 cut(s) 83, 288, 585
BclI TGATCA 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 603
BfaI CTAG 1 cut(s) 626
BfmI CTRYAG 1 cut(s) 16
Bme1390I CCNGG 3 cut(s) 83, 288, 585
BmgT120I GGNCC 1 cut(s) 653
BmrFI CCNGG 3 cut(s) 83, 288, 585
BmsI GCATC 2 cut(s) 195, 255
BpuEI CTTGAG 1 cut(s) 620
Bsa29I ATCGAT 1 cut(s) 114
BsaBI GATNNNNATC 1 cut(s) 139
BsaI GGTCTC 1 cut(s) 603
BsaJI CCNNGG 2 cut(s) 82, 286
BsaWI WCCGGW 1 cut(s) 616
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 4 cut(s) 260, 383, 455, 650
Bse1I ACTGG 2 cut(s) 71, 373
Bse8I GATNNNNATC 1 cut(s) 139
BseBI CCWGG 3 cut(s) 83, 288, 585
BseCI ATCGAT 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 82, 286
BseGI GGATG 4 cut(s) 270, 412, 511, 625
BseJI GATNNNNATC 1 cut(s) 139
BseLI CCNNNNNNNGG 4 cut(s) 260, 383, 455, 650
BseMII CTCAG 2 cut(s) 47, 519
BseNI ACTGG 2 cut(s) 71, 373
BseRI GAGGAG 1 cut(s) 545
BseSI GKGCMC 1 cut(s) 89
BshFI GGCC 2 cut(s) 544, 654
BshVI ATCGAT 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 643
BsiSI CCGG 2 cut(s) 254, 617
BslI CCNNNNNNNGG 4 cut(s) 260, 383, 455, 650
BsmAI GTCTC 1 cut(s) 603
BsnI GGCC 2 cut(s) 544, 654
Bso31I GGTCTC 1 cut(s) 603
Bsp1286I GDGCHC 2 cut(s) 89, 643
Bsp143I GATC 5 cut(s) 134, 195, 280, 498, 594
BspACI CCGC 2 cut(s) 257, 272
BspANI GGCC 2 cut(s) 544, 654
BspCNI CTCAG 2 cut(s) 46, 520
BspDI ATCGAT 1 cut(s) 114
BspHI TCATGA 1 cut(s) 277
BspPI GGATC 2 cut(s) 142, 589
BspTNI GGTCTC 1 cut(s) 603
BsrI ACTGG 2 cut(s) 71, 373
BssECI CCNNGG 2 cut(s) 82, 286
BssMI GATC 5 cut(s) 134, 195, 280, 498, 594
Bst2UI CCWGG 3 cut(s) 83, 288, 585
Bst4CI ACNGT 1 cut(s) 298
BstDEI CTNAG 2 cut(s) 33, 528
BstF5I GGATG 4 cut(s) 270, 412, 511, 625
BstKTI GATC 5 cut(s) 137, 198, 283, 501, 597
BstMAI GTCTC 1 cut(s) 603
BstMBI GATC 5 cut(s) 134, 195, 280, 498, 594
BstMWI GCNNNNNNNGC 2 cut(s) 479, 541
BstNI CCWGG 3 cut(s) 83, 288, 585
BstSCI CCNGG 3 cut(s) 81, 286, 583
BstSFI CTRYAG 1 cut(s) 16
BstSLI GKGCMC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
Bsu15I ATCGAT 1 cut(s) 114
BsuRI GGCC 2 cut(s) 544, 654
BsuTUI ATCGAT 1 cut(s) 114
BtsCI GGATG 4 cut(s) 270, 412, 511, 625
BtsIMutI CAGTG 1 cut(s) 64
CciI TCATGA 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 653
ClaI ATCGAT 1 cut(s) 114
CviAII CATG 5 cut(s) 122, 209, 278, 426, 559
DdeI CTNAG 2 cut(s) 33, 528
DpnI GATC 5 cut(s) 136, 197, 282, 500, 596
DpnII GATC 5 cut(s) 134, 195, 280, 498, 594
Eco147I AGGCCT 1 cut(s) 544
Eco31I GGTCTC 1 cut(s) 603
EcoRII CCWGG 3 cut(s) 81, 286, 583
FaeI CATG 5 cut(s) 125, 212, 281, 429, 562
FatI CATG 5 cut(s) 121, 208, 277, 425, 558
FauI CCCGC 1 cut(s) 250
FbaI TGATCA 1 cut(s) 280
FokI GGATG 4 cut(s) 277, 419, 518, 632
FspBI CTAG 1 cut(s) 626
HaeIII GGCC 2 cut(s) 544, 654
HapII CCGG 2 cut(s) 254, 617
Hin1II CATG 5 cut(s) 125, 212, 281, 429, 562
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HindIII AAGCTT 1 cut(s) 336
HinfI GANTC 2 cut(s) 111, 514
HpaI GTTAAC 1 cut(s) 486
HpaII CCGG 2 cut(s) 254, 617
HphI GGTGA 2 cut(s) 275, 361
Hpy166II GTNNAC 3 cut(s) 179, 224, 486
Hpy188I TCNGA 2 cut(s) 36, 529
Hpy188III TCNNGA 2 cut(s) 278, 358
Hpy8I GTNNAC 3 cut(s) 179, 224, 486
HpyAV CCTTC 4 cut(s) 346, 555, 585, 629
HpyCH4III ACNGT 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 541
HpyF3I CTNAG 2 cut(s) 33, 528
Hsp92II CATG 5 cut(s) 125, 212, 281, 429, 562
Ksp22I TGATCA 1 cut(s) 280
KspAI GTTAAC 1 cut(s) 486
Kzo9I GATC 5 cut(s) 134, 195, 280, 498, 594
LmnI GCTCC 2 cut(s) 532, 638
LweI GCATC 2 cut(s) 195, 255
MaeI CTAG 1 cut(s) 626
MalI GATC 5 cut(s) 136, 197, 282, 500, 596
MboI GATC 5 cut(s) 134, 195, 280, 498, 594
MboII GAAGA 1 cut(s) 135
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 2 cut(s) 89, 643
MluCI AATT 3 cut(s) 60, 227, 563
MlyI GAGTC 1 cut(s) 508
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 6 cut(s) 254, 386, 523, 534, 595, 666
MseI TTAA 3 cut(s) 333, 413, 485
MslI CAYNNNNRTG 1 cut(s) 213
MspI CCGG 2 cut(s) 254, 617
MspR9I CCNGG 3 cut(s) 83, 288, 585
MvaI CCWGG 3 cut(s) 83, 288, 585
MwoI GCNNNNNNNGC 2 cut(s) 479, 541
NdeII GATC 5 cut(s) 134, 195, 280, 498, 594
NlaIII CATG 5 cut(s) 125, 212, 281, 429, 562
PagI TCATGA 1 cut(s) 277
PceI AGGCCT 1 cut(s) 544
PfeI GAWTC 1 cut(s) 111
PflMI CCANNNNNTGG 3 cut(s) 383, 455, 650
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
Psp6I CCWGG 3 cut(s) 81, 286, 583
PspGI CCWGG 3 cut(s) 81, 286, 583
PspPI GGNCC 1 cut(s) 653
PsrI GAACNNNNNNTAC 2 cut(s) 597, 629
PsuI RGATCY 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 3 cut(s) 333, 413, 485
Sau3AI GATC 5 cut(s) 134, 195, 280, 498, 594
Sau96I GGNCC 1 cut(s) 653
SchI GAGTC 1 cut(s) 508
ScrFI CCNGG 3 cut(s) 83, 288, 585
SduI GDGCHC 2 cut(s) 89, 643
SetI ASST 8 cut(s) 45, 340, 357, 402, 537, 615, 627, 670
SfaNI GCATC 2 cut(s) 195, 255
SfcI CTRYAG 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 3 cut(s) 60, 227, 563
SseBI AGGCCT 1 cut(s) 544
SsiI CCGC 2 cut(s) 257, 272
SspI AATATT 1 cut(s) 466
SspMI CTAG 1 cut(s) 626
StuI AGGCCT 1 cut(s) 544
StyD4I CCNGG 3 cut(s) 81, 286, 583
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 114, 357
TasI AATT 3 cut(s) 60, 227, 563
TfiI GAWTC 1 cut(s) 111
Tru1I TTAA 3 cut(s) 333, 413, 485
Tru9I TTAA 3 cut(s) 333, 413, 485
TscAI CASTG 1 cut(s) 71
TspDTI ATGAA 5 cut(s) 132, 197, 231, 266, 547
TspRI CASTG 1 cut(s) 71
Van91I CCANNNNNTGG 3 cut(s) 383, 455, 650
XapI RAATTY 2 cut(s) 60, 563
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.