RLG00000000886

PCO_ADO

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018048
Physical Location & Seq
Reverse (-)
7430973 .. 7432264
1292 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000886

Sequence Viewer

Length: 732 bp
ATGGAGTCGGGTACAATAAAGAAAACCAAAATACAAATGCTATACGAAGCCTGTAGGGTTATATTTTCTCAGAAAGAGCTTCCAACTTTCAAAGAAATTCACTGGCTCAAAAATCTCCTGGGCACATTTGAAGCAATAGATTTTGGAATCGATGAACATGGCTTGTGTGGATCTCCATCTTCTAGTCCAAAGAGTGATAAGGGATTGATTTGTGGACAAGGCATCTCCCAGATCACTTACATTCATGTTTATGAATGTGAACAATTCTCTATCGGCGTGTTTTGTTTTCCGGCGGGAGGGATGCTTCCGCTTCATGATCACCCTGGAATGACCGTGTTTAGCAAACTCCTTTATGGTTCTTGTTATGTTAAAGCTTATGATTGGGTGAAGGTCGAGAGTTCTACTGGCTTCCCAACATTTGGATTAGGAGGCAAGGTTTTGGATGGCTTAATGAGTGCTCCATGTGAAACTTCTGTTCTATTTCCAAGAAGTGGTGGAAATATTCACGCTTTTACTGCGTTAACTCCTTGTGCGATCTTGGATGTATTGACTCCACCATATTCTGAGGAGCTTGGGAGGCCTTCTACTTACTTCATGGAATTTCCTATTCCTTCCTTGCCAGGCTATACGATCCTTGAGGAACGAGATCTACCGAATGACCTAGTAGTTGAAGGAGCACCATATCTTGGCCCTCCTATTGAAGCTGATGAAGATGACAACGACCACTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008152 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00430 ko01100 map00430 map01100
Pfam Domains
Protein Families
PCO_ADO

Protein Analysis

244

Amino Acids

26.65

Weight (kDa)

4.74

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCO_ADO PF07847 72 - 233 3.6e-56 PCO_ADO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018048)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g36720
malus_domestica MD15G1373300.v1.1
prunus_persica Prupe.1G521700_v2.0.a1
pyrus_communis pycom15g33420
rosa_chinensis RchiOBHm_Chr7g0242701
rosa_laevigata RLG00000000886
rosa_roxburghii Rroxscaffold_3G00222570
rosa_rugosa Rorug07G0316400
rosa_samantha Rh7AG471500 Rh7DG457000
rosa_wichuraiana Rw7G039220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 419, 491, 686
AciI CCGC 2 cut(s) 293, 308
AclWI GGATC 2 cut(s) 178, 625
AcsI RAATTY 2 cut(s) 96, 599
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 4 cut(s) 296, 419, 491, 686
AgsI TTSAA 4 cut(s) 91, 131, 671, 701
AjnI CCWGG 3 cut(s) 117, 322, 619
AluBI AGCT 4 cut(s) 79, 374, 571, 704
AluI AGCT 4 cut(s) 79, 374, 571, 704
Alw21I GWGCWC 2 cut(s) 460, 679
AlwI GGATC 2 cut(s) 178, 625
AoxI GGCC 2 cut(s) 578, 688
ApoI RAATTY 2 cut(s) 96, 599
AspS9I GGNCC 1 cut(s) 689
AsuHPI GGTGA 2 cut(s) 311, 397
BaeGI GKGCMC 1 cut(s) 125
Bbv12I GWGCWC 2 cut(s) 460, 679
BccI CCATC 2 cut(s) 184, 437
BciT130I CCWGG 3 cut(s) 119, 324, 621
BclI TGATCA 1 cut(s) 316
BfaI CTAG 2 cut(s) 183, 662
BfmI CTRYAG 1 cut(s) 52
BglII AGATCT 1 cut(s) 646
Bme1390I CCNGG 3 cut(s) 119, 324, 621
BmgT120I GGNCC 1 cut(s) 689
BmrFI CCNGG 3 cut(s) 119, 324, 621
BmsI GCATC 2 cut(s) 231, 291
BpuEI CTTGAG 1 cut(s) 656
Bsa29I ATCGAT 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 175
BsaJI CCNNGG 2 cut(s) 118, 322
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 4 cut(s) 296, 419, 491, 686
Bse1I ACTGG 2 cut(s) 107, 409
Bse8I GATNNNNATC 1 cut(s) 175
BseBI CCWGG 3 cut(s) 119, 324, 621
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 118, 322
BseGI GGATG 3 cut(s) 306, 448, 547
BseJI GATNNNNATC 1 cut(s) 175
BseLI CCNNNNNNNGG 4 cut(s) 296, 419, 491, 686
BseMII CTCAG 2 cut(s) 83, 555
BseNI ACTGG 2 cut(s) 107, 409
BseRI GAGGAG 1 cut(s) 581
BseSI GKGCMC 1 cut(s) 125
BshFI GGCC 2 cut(s) 580, 690
BshVI ATCGAT 1 cut(s) 150
BsiHKAI GWGCWC 2 cut(s) 460, 679
BsiSI CCGG 1 cut(s) 290
BslI CCNNNNNNNGG 4 cut(s) 296, 419, 491, 686
BsnI GGCC 2 cut(s) 580, 690
Bsp1286I GDGCHC 3 cut(s) 125, 460, 679
Bsp143I GATC 6 cut(s) 170, 231, 316, 534, 630, 646
BspACI CCGC 2 cut(s) 293, 308
BspANI GGCC 2 cut(s) 580, 690
BspCNI CTCAG 2 cut(s) 82, 556
BspDI ATCGAT 1 cut(s) 150
BspHI TCATGA 1 cut(s) 313
BspPI GGATC 2 cut(s) 178, 625
BsrI ACTGG 2 cut(s) 107, 409
BssECI CCNNGG 2 cut(s) 118, 322
BssMI GATC 6 cut(s) 170, 231, 316, 534, 630, 646
Bst2UI CCWGG 3 cut(s) 119, 324, 621
Bst4CI ACNGT 2 cut(s) 334, 728
BstDEI CTNAG 2 cut(s) 69, 564
BstF5I GGATG 3 cut(s) 306, 448, 547
BstKTI GATC 6 cut(s) 173, 234, 319, 537, 633, 649
BstMBI GATC 6 cut(s) 170, 231, 316, 534, 630, 646
BstMWI GCNNNNNNNGC 2 cut(s) 515, 577
BstNI CCWGG 3 cut(s) 119, 324, 621
BstSCI CCNGG 3 cut(s) 117, 322, 619
BstSFI CTRYAG 1 cut(s) 52
BstSLI GKGCMC 1 cut(s) 125
BstX2I RGATCY 2 cut(s) 170, 646
BstYI RGATCY 2 cut(s) 170, 646
Bsu15I ATCGAT 1 cut(s) 150
BsuRI GGCC 2 cut(s) 580, 690
BsuTUI ATCGAT 1 cut(s) 150
BtsCI GGATG 3 cut(s) 306, 448, 547
BtsIMutI CAGTG 2 cut(s) 100, 724
CciI TCATGA 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 689
ClaI ATCGAT 1 cut(s) 150
Csp6I GTAC 1 cut(s) 12
CviAII CATG 5 cut(s) 158, 245, 314, 462, 595
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 2 cut(s) 69, 564
DpnI GATC 6 cut(s) 172, 233, 318, 536, 632, 648
DpnII GATC 6 cut(s) 170, 231, 316, 534, 630, 646
Eco147I AGGCCT 1 cut(s) 580
EcoRII CCWGG 3 cut(s) 117, 322, 619
FaeI CATG 5 cut(s) 161, 248, 317, 465, 598
FatI CATG 5 cut(s) 157, 244, 313, 461, 594
FauI CCCGC 1 cut(s) 286
FbaI TGATCA 1 cut(s) 316
FokI GGATG 3 cut(s) 313, 455, 554
FspBI CTAG 2 cut(s) 183, 662
HaeIII GGCC 2 cut(s) 580, 690
HapII CCGG 1 cut(s) 290
Hin1II CATG 5 cut(s) 161, 248, 317, 465, 598
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 3 cut(s) 5, 147, 550
HpaI GTTAAC 1 cut(s) 522
HpaII CCGG 1 cut(s) 290
HphI GGTGA 2 cut(s) 311, 397
Hpy166II GTNNAC 3 cut(s) 215, 260, 522
Hpy188I TCNGA 2 cut(s) 72, 565
Hpy188III TCNNGA 2 cut(s) 314, 394
Hpy8I GTNNAC 3 cut(s) 215, 260, 522
HpyAV CCTTC 4 cut(s) 382, 591, 621, 665
HpyCH4III ACNGT 2 cut(s) 334, 728
HpyF10VI GCNNNNNNNGC 2 cut(s) 515, 577
HpyF3I CTNAG 2 cut(s) 69, 564
Hsp92II CATG 5 cut(s) 161, 248, 317, 465, 598
Ksp22I TGATCA 1 cut(s) 316
KspAI GTTAAC 1 cut(s) 522
Kzo9I GATC 6 cut(s) 170, 231, 316, 534, 630, 646
LmnI GCTCC 3 cut(s) 463, 568, 674
LweI GCATC 2 cut(s) 231, 291
MaeI CTAG 2 cut(s) 183, 662
MalI GATC 6 cut(s) 172, 233, 318, 536, 632, 648
MboI GATC 6 cut(s) 170, 231, 316, 534, 630, 646
MboII GAAGA 2 cut(s) 171, 722
MflI RGATCY 2 cut(s) 170, 646
MhlI GDGCHC 3 cut(s) 125, 460, 679
MluCI AATT 3 cut(s) 96, 263, 599
MlyI GAGTC 2 cut(s) 14, 544
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 6 cut(s) 290, 422, 559, 570, 631, 702
MseI TTAA 3 cut(s) 369, 449, 521
MslI CAYNNNNRTG 1 cut(s) 249
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 3 cut(s) 119, 324, 621
MvaI CCWGG 3 cut(s) 119, 324, 621
MwoI GCNNNNNNNGC 2 cut(s) 515, 577
NdeII GATC 6 cut(s) 170, 231, 316, 534, 630, 646
NlaIII CATG 5 cut(s) 161, 248, 317, 465, 598
PagI TCATGA 1 cut(s) 313
PceI AGGCCT 1 cut(s) 580
PfeI GAWTC 1 cut(s) 147
PflMI CCANNNNNTGG 3 cut(s) 419, 491, 686
PleI GAGTC 2 cut(s) 13, 544
PpsI GAGTC 2 cut(s) 13, 544
Psp6I CCWGG 3 cut(s) 117, 322, 619
PspGI CCWGG 3 cut(s) 117, 322, 619
PspPI GGNCC 1 cut(s) 689
PsrI GAACNNNNNNTAC 2 cut(s) 633, 665
PsuI RGATCY 2 cut(s) 170, 646
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 3 cut(s) 369, 449, 521
Sau3AI GATC 6 cut(s) 170, 231, 316, 534, 630, 646
Sau96I GGNCC 1 cut(s) 689
SchI GAGTC 2 cut(s) 14, 544
ScrFI CCNGG 3 cut(s) 119, 324, 621
SduI GDGCHC 3 cut(s) 125, 460, 679
SetI ASST 7 cut(s) 81, 376, 393, 438, 573, 663, 706
SfaNI GCATC 2 cut(s) 231, 291
SfcI CTRYAG 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
Sse9I AATT 3 cut(s) 96, 263, 599
SseBI AGGCCT 1 cut(s) 580
SsiI CCGC 2 cut(s) 293, 308
SspI AATATT 1 cut(s) 502
SspMI CTAG 2 cut(s) 183, 662
StuI AGGCCT 1 cut(s) 580
StyD4I CCNGG 3 cut(s) 117, 322, 619
TaaI ACNGT 2 cut(s) 334, 728
TaqI TCGA 2 cut(s) 150, 393
TasI AATT 3 cut(s) 96, 263, 599
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 3 cut(s) 369, 449, 521
Tru9I TTAA 3 cut(s) 369, 449, 521
TscAI CASTG 2 cut(s) 107, 731
TspDTI ATGAA 6 cut(s) 168, 233, 267, 302, 583, 723
TspRI CASTG 2 cut(s) 107, 731
Van91I CCANNNNNTGG 3 cut(s) 419, 491, 686
XapI RAATTY 2 cut(s) 96, 599
XspI CTAG 2 cut(s) 183, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.