Prupe.1G524700_v2.0.a1

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015640
Physical Location & Seq
Forward (+)
43006976 .. 43008813
1838 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G524700.1

Sequence Viewer

Length: 1038 bp
ATGGCCCGTATCAAACTCATCGGCATTTTGAAAGACAAGGTCTCGATCCTCAAGGCAGCTCTATACATCAACCGCCATGCCTCGTCAGTGCACGTTGCCGTCCTACGCGCCACCACCCACCACCCGTCACGGCCGCCTTCCGAGGAGAAGATCGCCTCCGTGCTCGCCCTTGGGCACTCCTCACGTATCACTGCATGCGCATGCATTGAGGCGCTCATGGATCGCCTCCACGGAACGCAGAGCGCATTTGTTGCCCTAAAGTGCCTCTTGACCCTCCACAACATTATAGCGAAAGGGTCATTTATTCTCAAAGACCAGCTTGCTTTTTACCCTTCTTTTGGGGGACACAATTTCTTGAACCTCTCTATGTTTTCTGACAATTCTGATTTGGTCATGTGGGAATTTTCTTCTTGGGTTAGATGGTACGCTGGGGTGGTTGAGCAGAATTTGATGGTGTCTAGAGCAATTGGGTATTATCTCAACTCATCGAAGAAAGATAAAGAAGAGAAGGCACTTACGTTACTGGACTCGGATTTGGCAGTGGAGATTGAAGTTCTTGTAGAATTTGTGGTACGAATTTGCGACGCACCAAATTCTTTGGACCTTCAGAGGAACAATTTGGTTTATGAGGTTGTAAGAGCTGCAGGGGAAGATTACAGGTCTGTTCAGCGAGAAATCTTGGCCCGAGTGAAAGAAGTTGGGGACAGAGTCGACTCAGTCGAGGGAGTGAATTCTGATGAGTTGACTCAGTTGATTGACACGTTGGAGAGGCTCGAGGGTTGTAAGGGGAAGTTGATGCTGTTGTTTTTGAACAGGAAGAGGAATGATGGGTTTTGGGATACGGTTCGGGAGACGAAGGCCATGCTTGTGGAGACGAAGAAGAAAAAAGAAGAGAAGAGCCTGGTGAGGTTTGTGGGGAGGGACGAGTCGGCCGAGTCGACGCAGTTTTGGAACCCATTTCTTGAACCAGGACAGTTGTTGCTGTTACCATCTGGGGGTGGGTGGTTGGATTTTGGCCCAACCCCAATAGCGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

346

Amino Acids

38.71

Weight (kDa)

6.73

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015640)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g36220
malus_domestica MD08G1190800.v1.1 MD15G1378100.v1.1
prunus_persica Prupe.1G524700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0238041
rosa_laevigata RLG00000000945
rosa_multiflora Rmu_co8251785.1_g000001 Rmu_sc0002586.1_g000013 Rmu_sc0021174.1_g000001
rosa_roxburghii Rroxscaffold_3G00223430
rosa_rugosa Rorug07G0310200
rosa_samantha Rh7AG465400 Rh7BG436200 Rh7CG483600 Rh7DG452100
rosa_wichuraiana Rw7G038550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 199
AccI GTMKAC 2 cut(s) 711, 938
AccII CGCG 1 cut(s) 108
AciI CCGC 3 cut(s) 73, 134, 1031
AclWI GGATC 2 cut(s) 40, 228
AcoI YGGCCR 2 cut(s) 131, 930
AcsI RAATTY 6 cut(s) 401, 445, 563, 576, 592, 730
AcuI CTGAAG 1 cut(s) 590
AfaI GTAC 2 cut(s) 425, 573
AfiI CCNNNNNNNGG 3 cut(s) 338, 995, 1030
AflIII ACRYGT 1 cut(s) 759
AgsI TTSAA 5 cut(s) 31, 358, 551, 811, 965
AjnI CCWGG 2 cut(s) 900, 967
AluBI AGCT 3 cut(s) 59, 319, 641
AluI AGCT 3 cut(s) 59, 319, 641
Alw21I GWGCWC 2 cut(s) 93, 165
Alw26I GTCTC 3 cut(s) 46, 845, 866
Alw44I GTGCAC 1 cut(s) 89
AlwI GGATC 2 cut(s) 40, 228
Ama87I CYCGRG 2 cut(s) 684, 773
AoxI GGCC 6 cut(s) 3, 131, 681, 858, 930, 1015
ApaLI GTGCAC 1 cut(s) 89
ApeKI GCWGC 2 cut(s) 56, 641
ApoI RAATTY 6 cut(s) 401, 445, 563, 576, 592, 730
AspLEI GCGC 4 cut(s) 110, 200, 214, 245
AspS9I GGNCC 4 cut(s) 4, 601, 682, 1016
AsuHPI GGTGA 1 cut(s) 916
AvaI CYCGRG 2 cut(s) 684, 773
AvaII GGWCC 1 cut(s) 601
BaeGI GKGCMC 2 cut(s) 93, 177
Bbv12I GWGCWC 2 cut(s) 93, 165
BbvI GCAGC 2 cut(s) 68, 628
BccI CCATC 4 cut(s) 414, 445, 821, 997
BceAI ACGGC 2 cut(s) 83, 146
BcgI CGANNNNNNTGC 2 cut(s) 844, 878
BciT130I CCWGG 2 cut(s) 902, 969
BciVI GTATCC 1 cut(s) 832
BcoDI GTCTC 3 cut(s) 46, 845, 866
BfaI CTAG 1 cut(s) 459
BfmI CTRYAG 1 cut(s) 642
BfoI RGCGCY 1 cut(s) 215
BfuI GTATCC 1 cut(s) 832
BisI GCNGC 3 cut(s) 57, 134, 642
BlsI GCNGC 3 cut(s) 58, 135, 643
Bme1390I CCNGG 2 cut(s) 902, 969
Bme18I GGWCC 1 cut(s) 601
BmeT110I CYCGRG 2 cut(s) 684, 773
BmgT120I GGNCC 4 cut(s) 4, 601, 682, 1016
BmiI GGNNCC 1 cut(s) 953
BmrFI CCNGG 2 cut(s) 902, 969
BmsI GCATC 1 cut(s) 786
BpuEI CTTGAG 1 cut(s) 35
BsaAI YACGTR 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 3 cut(s) 141, 169, 229
Bsc4I CCNNNNNNNGG 3 cut(s) 338, 995, 1030
Bse1I ACTGG 1 cut(s) 528
BseBI CCWGG 2 cut(s) 902, 969
BseDI CCNNGG 3 cut(s) 141, 169, 229
BseLI CCNNNNNNNGG 3 cut(s) 338, 995, 1030
BseMII CTCAG 2 cut(s) 729, 761
BseNI ACTGG 1 cut(s) 528
BseRI GAGGAG 2 cut(s) 158, 169
BseSI GKGCMC 2 cut(s) 93, 177
BseX3I CGGCCG 2 cut(s) 131, 930
BseXI GCAGC 2 cut(s) 68, 628
BseYI CCCAGC 1 cut(s) 428
Bsh1236I CGCG 1 cut(s) 108
Bsh1285I CGRYCG 2 cut(s) 134, 933
BshFI GGCC 6 cut(s) 5, 133, 683, 860, 932, 1017
BsiEI CGRYCG 2 cut(s) 134, 933
BsiHKAI GWGCWC 2 cut(s) 93, 165
BsiHKCI CYCGRG 2 cut(s) 684, 773
BslFI GGGAC 3 cut(s) 357, 716, 935
BslI CCNNNNNNNGG 3 cut(s) 338, 995, 1030
BsmAI GTCTC 3 cut(s) 46, 845, 866
BsmBI CGTCTC 2 cut(s) 845, 866
BsmFI GGGAC 3 cut(s) 357, 716, 935
BsnI GGCC 6 cut(s) 5, 133, 683, 860, 932, 1017
Bso31I GGTCTC 1 cut(s) 46
BsoBI CYCGRG 2 cut(s) 684, 773
Bsp1286I GDGCHC 3 cut(s) 93, 165, 177
Bsp143I GATC 3 cut(s) 45, 150, 220
BspACI CCGC 3 cut(s) 73, 134, 1031
BspANI GGCC 6 cut(s) 5, 133, 683, 860, 932, 1017
BspCNI CTCAG 2 cut(s) 728, 760
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 953
BspMAI CTGCAG 1 cut(s) 646
BspPI GGATC 2 cut(s) 40, 228
BspQI GCTCTTC 1 cut(s) 890
BspTNI GGTCTC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 528
BssECI CCNNGG 3 cut(s) 141, 169, 229
BssMI GATC 3 cut(s) 45, 150, 220
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 2 cut(s) 902, 969
Bst4CI ACNGT 2 cut(s) 844, 975
Bst6I CTCTTC 4 cut(s) 498, 812, 885, 890
BstAPI GCANNNNNTGC 1 cut(s) 251
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 4 cut(s) 165, 196, 202, 321
BstDEI CTNAG 2 cut(s) 715, 747
BstDSI CCRYGG 1 cut(s) 229
BstFNI CGCG 1 cut(s) 108
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 4 cut(s) 110, 200, 214, 245
BstKTI GATC 3 cut(s) 48, 153, 223
BstMAI GTCTC 3 cut(s) 46, 845, 866
BstMBI GATC 3 cut(s) 45, 150, 220
BstMCI CGRYCG 2 cut(s) 134, 933
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 2 cut(s) 902, 969
BstNSI RCATGY 2 cut(s) 198, 204
BstSCI CCNGG 2 cut(s) 900, 967
BstSFI CTRYAG 1 cut(s) 642
BstSLI GKGCMC 2 cut(s) 93, 177
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 68, 628
BstXI CCANNNNNNTGG 1 cut(s) 868
BstZI CGGCCG 2 cut(s) 131, 930
BsuI GTATCC 1 cut(s) 832
BsuRI GGCC 6 cut(s) 5, 133, 683, 860, 932, 1017
BtgI CCRYGG 1 cut(s) 229
BtsI GCAGTG 2 cut(s) 189, 546
BtsIMutI CAGTG 3 cut(s) 93, 189, 546
Cac8I GCNNGC 4 cut(s) 165, 196, 202, 321
CfoI GCGC 4 cut(s) 110, 200, 214, 245
Cfr13I GGNCC 4 cut(s) 4, 601, 682, 1016
CseI GACGC 2 cut(s) 593, 949
Csp6I GTAC 2 cut(s) 424, 572
CviAII CATG 6 cut(s) 77, 195, 201, 217, 394, 862
CviQI GTAC 2 cut(s) 424, 572
DdeI CTNAG 2 cut(s) 715, 747
DpnI GATC 3 cut(s) 47, 152, 222
DpnII GATC 3 cut(s) 45, 150, 220
EaeI YGGCCR 2 cut(s) 131, 930
EagI CGGCCG 2 cut(s) 131, 930
Eam1104I CTCTTC 4 cut(s) 498, 812, 885, 890
EarI CTCTTC 4 cut(s) 498, 812, 885, 890
EclXI CGGCCG 2 cut(s) 131, 930
Eco130I CCWWGG 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 601
Eco52I CGGCCG 2 cut(s) 131, 930
Eco57I CTGAAG 1 cut(s) 590
Eco88I CYCGRG 2 cut(s) 684, 773
EcoRI GAATTC 1 cut(s) 730
EcoRII CCWGG 2 cut(s) 900, 967
EcoT14I CCWWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 169
Esp3I CGTCTC 2 cut(s) 845, 866
FaeI CATG 6 cut(s) 80, 198, 204, 220, 397, 865
FalI AAGNNNNNCTT 4 cut(s) 251, 283, 303, 335
FaqI GGGAC 3 cut(s) 357, 716, 935
FatI CATG 6 cut(s) 76, 194, 200, 216, 393, 861
FblI GTMKAC 2 cut(s) 711, 938
Fnu4HI GCNGC 3 cut(s) 57, 134, 642
Fsp4HI GCNGC 3 cut(s) 57, 134, 642
FspAI RTGCGCAY 1 cut(s) 199
FspBI CTAG 1 cut(s) 459
FspI TGCGCA 1 cut(s) 199
GlaI GCGC 4 cut(s) 109, 199, 213, 244
GluI GCNGC 3 cut(s) 57, 134, 642
GsaI CCCAGC 1 cut(s) 432
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 6 cut(s) 5, 133, 683, 860, 932, 1017
HgaI GACGC 2 cut(s) 593, 949
HhaI GCGC 4 cut(s) 110, 200, 214, 245
Hin1II CATG 6 cut(s) 80, 198, 204, 220, 397, 865
Hin6I GCGC 4 cut(s) 108, 198, 212, 243
HinP1I GCGC 4 cut(s) 108, 198, 212, 243
HincII GTYRAC 3 cut(s) 712, 744, 939
HindII GTYRAC 3 cut(s) 712, 744, 939
HinfI GANTC 6 cut(s) 527, 708, 713, 745, 926, 935
HphI GGTGA 1 cut(s) 916
Hpy166II GTNNAC 4 cut(s) 91, 712, 744, 939
Hpy188I TCNGA 6 cut(s) 142, 376, 385, 532, 609, 736
Hpy188III TCNNGA 6 cut(s) 43, 268, 355, 459, 848, 962
Hpy8I GTNNAC 4 cut(s) 91, 712, 744, 939
Hpy99I CGWCG 2 cut(s) 587, 943
HpyAV CCTTC 5 cut(s) 147, 342, 502, 614, 850
HpyCH4III ACNGT 2 cut(s) 844, 975
HpyCH4IV ACGT 4 cut(s) 93, 184, 518, 761
HpyCH4V TGCA 4 cut(s) 91, 194, 204, 644
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 2 cut(s) 715, 747
HpySE526I ACGT 4 cut(s) 93, 184, 518, 761
Hsp92II CATG 6 cut(s) 80, 198, 204, 220, 397, 865
HspAI GCGC 4 cut(s) 108, 198, 212, 243
Kzo9I GATC 3 cut(s) 45, 150, 220
LguI GCTCTTC 1 cut(s) 890
Lsp1109I GCAGC 2 cut(s) 68, 628
LweI GCATC 1 cut(s) 786
MaeI CTAG 1 cut(s) 459
MaeII ACGT 4 cut(s) 93, 184, 518, 761
MaeIII GTNAC 3 cut(s) 126, 519, 984
MalI GATC 3 cut(s) 47, 152, 222
MboI GATC 3 cut(s) 45, 150, 220
MfeI CAATTG 1 cut(s) 465
MhlI GDGCHC 3 cut(s) 93, 165, 177
MlyI GAGTC 6 cut(s) 521, 707, 717, 739, 935, 944
MmeI TCCRAC 2 cut(s) 744, 987
Mph1103I ATGCAT 1 cut(s) 206
MslI CAYNNNNRTG 2 cut(s) 199, 866
MspR9I CCNGG 2 cut(s) 902, 969
MunI CAATTG 1 cut(s) 465
MvaI CCWGG 2 cut(s) 902, 969
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 3 cut(s) 45, 150, 220
NlaIII CATG 6 cut(s) 80, 198, 204, 220, 397, 865
NlaIV GGNNCC 1 cut(s) 953
NmeAIII GCCGAG 1 cut(s) 958
NmuCI GTSAC 1 cut(s) 126
NsbI TGCGCA 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 206
NspI RCATGY 2 cut(s) 198, 204
PaeI GCATGC 2 cut(s) 198, 204
PaeR7I CTCGAG 1 cut(s) 773
PciSI GCTCTTC 1 cut(s) 890
PcsI WCGNNNNNNNCGW 3 cut(s) 717, 930, 935
PflFI GACNNNGTC 3 cut(s) 38, 707, 716
PkrI GCNGC 3 cut(s) 58, 135, 643
PleI GAGTC 6 cut(s) 521, 707, 716, 739, 934, 943
PpsI GAGTC 6 cut(s) 521, 707, 716, 739, 934, 943
Ppu21I YACGTR 1 cut(s) 185
Psp6I CCWGG 2 cut(s) 900, 967
PspFI CCCAGC 1 cut(s) 428
PspGI CCWGG 2 cut(s) 900, 967
PspN4I GGNNCC 1 cut(s) 953
PspPI GGNCC 4 cut(s) 4, 601, 682, 1016
PspXI VCTCGAGB 1 cut(s) 773
PstI CTGCAG 1 cut(s) 646
PsyI GACNNNGTC 3 cut(s) 38, 707, 716
RsaI GTAC 2 cut(s) 425, 573
RsaNI GTAC 2 cut(s) 424, 572
RseI CAYNNNNRTG 2 cut(s) 199, 866
SalI GTCGAC 2 cut(s) 710, 937
SapI GCTCTTC 1 cut(s) 890
SatI GCNGC 3 cut(s) 57, 134, 642
Sau3AI GATC 3 cut(s) 45, 150, 220
Sau96I GGNCC 4 cut(s) 4, 601, 682, 1016
SchI GAGTC 6 cut(s) 521, 707, 717, 739, 935, 944
ScrFI CCNGG 2 cut(s) 902, 969
SduI GDGCHC 3 cut(s) 93, 165, 177
SfaNI GCATC 1 cut(s) 786
SfcI CTRYAG 1 cut(s) 642
Sfr274I CTCGAG 1 cut(s) 773
SinI GGWCC 1 cut(s) 601
SlaI CTCGAG 1 cut(s) 773
SmiMI CAYNNNNRTG 2 cut(s) 199, 866
SmlI CTYRAG 2 cut(s) 50, 773
SmoI CTYRAG 2 cut(s) 50, 773
SphI GCATGC 2 cut(s) 198, 204
SsiI CCGC 3 cut(s) 73, 134, 1031
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 2 cut(s) 900, 967
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 2 cut(s) 844, 975
TaiI ACGT 4 cut(s) 96, 187, 521, 764
TaqI TCGA 6 cut(s) 44, 488, 711, 720, 774, 938
TauI GCSGC 1 cut(s) 136
TscAI CASTG 3 cut(s) 93, 196, 546
TseFI GTSAC 1 cut(s) 126
TseI GCWGC 2 cut(s) 56, 641
Tsp45I GTSAC 1 cut(s) 126
TspGWI ACGGA 2 cut(s) 148, 246
TspRI CASTG 3 cut(s) 93, 196, 546
Tth111I GACNNNGTC 3 cut(s) 38, 707, 716
VneI GTGCAC 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 601
XapI RAATTY 6 cut(s) 401, 445, 563, 576, 592, 730
XbaI TCTAGA 1 cut(s) 458
XceI RCATGY 2 cut(s) 198, 204
XhoI CTCGAG 1 cut(s) 773
XmiI GTMKAC 2 cut(s) 711, 938
XspI CTAG 1 cut(s) 459
Zsp2I ATGCAT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.