Rh7DG452100

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015640
Physical Location & Seq
Reverse (-)
64337973 .. 64339242
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG452100.1

Sequence Viewer

Length: 1065 bp
ATGGACCGGAAGATCAACCTCATCGACATTCTCAAAGACAAGGCCTCCATTCTCCGCGCCACCCTCTCCATCAACCGTCACGTGTCTTCCATCCACGTCGCCATCCTCCGCGCCACCTCGCACGACCCGTCGTCGCCTCCGTCCGAGGAAAAGATCGCCGACATCCTCGACCTGGGCCAGTCGTCGCGTCTCGCTGCCTGCACCTGCATTGACATCCTCATGGACCGCCTGCACGTCACCCAGAACGCGTTCGTCGCCCTGAAATGCCTCTACACCGTACATAACATAGTATCCAGAGGTTCGTTCATTTTCAGAGACCAGATTTCTTACCACCCGAGTTTCGGAGGGCGTAACTTCCTCAACATGACCATGTTCAGCGACAAATCGGATTTGGATACGTGGGAGTTTTCGTTGTGGGTGAGGTGGTACGCCGCCGTGGTGGAACAGAATCTGATGGTGGCGAGGGCAATCGGTTACTACCTAAACTCAGAAAACATGAAAGGACAAAATGATAATAAGGTTGTGGTGGCTCTGTTGAATTCCGATTTGGTGGCCGATATCGAAGTGCTAGTGGGATTCGTGGCGAGGATTAGCGACGCGCCGGAGTCATTGAGCCTGCAGCGGAACGATTTGGTCTACGAGATCGTCAAGGCGGCGAGTGAGGACTACAGGGTGGTGCAGCGCGAAATTTCGGTTCGGGTTAAAGAAGTCGAGGACAGAGTGGAGAGGCTGAGTCTGTCCGAGTTGACTCGGGTGGTGGAGGCGCTGAGGAGGCTGGAGGATTGTAAGGAGAGGCTGGTGTTGCTGTTCGTGAACCGGAAAAGGAACGACGGGCTGTGGGAGTCGGTGAGGAAAACGAGGGCGGAGCTGGCGGAGACGAAGGCGCAGAGAGAGGAGAGGAGGCTGGTGGTGGTGAGGACGGTTAGTGGGAACAGAGGGCGAGACGAGTTGAGTGAGTCGACTCAGTGCTGGAATCCGTTTCTTGAACCAGGGCAGTTGCTTCTGTTACCATCTGGTGGAGGAGGAGGGTGGCTGGGGATGGGGCCCAGCCCGATAGCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

354

Amino Acids

39.97

Weight (kDa)

6.63

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 31 - 166 4e-12 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015640)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g36220
malus_domestica MD08G1190800.v1.1 MD15G1378100.v1.1
prunus_persica Prupe.1G524700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0238041
rosa_laevigata RLG00000000945
rosa_multiflora Rmu_co8251785.1_g000001 Rmu_sc0002586.1_g000013 Rmu_sc0021174.1_g000001
rosa_roxburghii Rroxscaffold_3G00223430
rosa_rugosa Rorug07G0310200
rosa_samantha Rh7AG465400 Rh7BG436200 Rh7CG483600 Rh7DG452100
rosa_wichuraiana Rw7G038550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 212
AccB7I CCANNNNNTGG 1 cut(s) 1016
AccI GTMKAC 2 cut(s) 636, 959
AccII CGCG 6 cut(s) 57, 111, 187, 248, 599, 684
AciI CCGC 8 cut(s) 55, 109, 226, 432, 622, 653, 863, 872
AcoI YGGCCR 1 cut(s) 552
AcsI RAATTY 2 cut(s) 538, 687
AcvI CACGTG 1 cut(s) 82
AfaI GTAC 2 cut(s) 279, 428
AfiI CCNNNNNNNGG 3 cut(s) 172, 341, 1016
AflIII ACRYGT 2 cut(s) 81, 246
AgsI TTSAA 2 cut(s) 538, 986
AhdI GACNNNNNGTC 1 cut(s) 130
AjiI CACGTC 2 cut(s) 97, 235
AjnI CCWGG 2 cut(s) 171, 988
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
AluBI AGCT 1 cut(s) 868
AluI AGCT 1 cut(s) 868
Alw26I GTCTC 4 cut(s) 194, 309, 869, 936
AlwNI CAGNNNCTG 1 cut(s) 451
Ama87I CYCGRG 2 cut(s) 334, 750
AoxI GGCC 4 cut(s) 42, 175, 552, 1043
ApaI GGGCCC 1 cut(s) 1047
ApeKI GCWGC 3 cut(s) 194, 619, 679
ApoI RAATTY 2 cut(s) 538, 687
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 6 cut(s) 59, 113, 601, 684, 766, 886
AspS9I GGNCC 5 cut(s) 4, 175, 223, 1043, 1044
AsuHPI GGTGA 4 cut(s) 229, 430, 859, 925
AvaI CYCGRG 2 cut(s) 334, 750
AvaII GGWCC 2 cut(s) 4, 223
BaeGI GKGCMC 1 cut(s) 1047
BanII GRGCYC 1 cut(s) 1047
BbrPI CACGTG 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 78
BbvCI CCTCAGC 1 cut(s) 767
BbvI GCAGC 3 cut(s) 181, 631, 691
BccI CCATC 6 cut(s) 77, 98, 110, 448, 1018, 1033
BceAI ACGGC 1 cut(s) 419
BciT130I CCWGG 2 cut(s) 173, 990
BciVI GTATCC 2 cut(s) 301, 388
BcoDI GTCTC 4 cut(s) 194, 309, 869, 936
BfaI CTAG 1 cut(s) 569
BfmI CTRYAG 2 cut(s) 617, 667
BfoI RGCGCY 1 cut(s) 767
BfuAI ACCTGC 1 cut(s) 212
BfuI GTATCC 2 cut(s) 301, 388
BisI GCNGC 5 cut(s) 195, 432, 620, 654, 680
BlsI GCNGC 5 cut(s) 196, 433, 621, 655, 681
Bme1390I CCNGG 2 cut(s) 173, 990
Bme18I GGWCC 2 cut(s) 4, 223
BmeRI GACNNNNNGTC 1 cut(s) 130
BmeT110I CYCGRG 2 cut(s) 334, 750
BmgBI CACGTC 2 cut(s) 97, 235
BmgT120I GGNCC 5 cut(s) 4, 175, 223, 1043, 1044
BmiI GGNNCC 2 cut(s) 1044, 1045
BmrFI CCNGG 2 cut(s) 173, 990
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 797
Bpu10I CCTNAGC 1 cut(s) 767
BsaAI YACGTR 2 cut(s) 82, 399
BsaI GGTCTC 1 cut(s) 309
BsaJI CCNNGG 4 cut(s) 144, 172, 435, 989
BsaWI WCCGGW 2 cut(s) 6, 816
BsaXI ACNNNNNCTCC 4 cut(s) 29, 59, 395, 425
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 341, 1016
Bse1I ACTGG 1 cut(s) 178
BseBI CCWGG 2 cut(s) 173, 990
BseDI CCNNGG 4 cut(s) 144, 172, 435, 989
BseGI GGATG 5 cut(s) 90, 102, 162, 213, 1044
BseLI CCNNNNNNNGG 3 cut(s) 172, 341, 1016
BseMII CTCAG 4 cut(s) 501, 722, 758, 977
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 5 cut(s) 784, 908, 913, 1035, 1038
BseSI GKGCMC 1 cut(s) 1047
BseXI GCAGC 3 cut(s) 181, 631, 691
BseYI CCCAGC 2 cut(s) 1033, 1046
BsgI GTGCAG 3 cut(s) 184, 215, 698
Bsh1236I CGCG 6 cut(s) 57, 111, 187, 248, 599, 684
BshFI GGCC 4 cut(s) 44, 177, 554, 1045
BsiHKCI CYCGRG 2 cut(s) 334, 750
BsiSI CCGG 3 cut(s) 7, 602, 817
BslI CCNNNNNNNGG 3 cut(s) 172, 341, 1016
BsmAI GTCTC 4 cut(s) 194, 309, 869, 936
BsmBI CGTCTC 3 cut(s) 194, 869, 936
BsnI GGCC 4 cut(s) 44, 177, 554, 1045
Bso31I GGTCTC 1 cut(s) 309
BsoBI CYCGRG 2 cut(s) 334, 750
Bsp120I GGGCCC 1 cut(s) 1043
Bsp1286I GDGCHC 1 cut(s) 1047
Bsp143I GATC 3 cut(s) 12, 153, 642
BspACI CCGC 8 cut(s) 55, 109, 226, 432, 622, 653, 863, 872
BspANI GGCC 4 cut(s) 44, 177, 554, 1045
BspCNI CTCAG 4 cut(s) 500, 723, 759, 976
BspFNI CGCG 6 cut(s) 57, 111, 187, 248, 599, 684
BspLI GGNNCC 2 cut(s) 1044, 1045
BspMAI CTGCAG 1 cut(s) 621
BspMI ACCTGC 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 309
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 4 cut(s) 144, 172, 435, 989
BssMI GATC 3 cut(s) 12, 153, 642
Bst2UI CCWGG 2 cut(s) 173, 990
Bst4CI ACNGT 3 cut(s) 77, 277, 922
BstBAI YACGTR 2 cut(s) 82, 399
BstC8I GCNNGC 4 cut(s) 199, 230, 617, 870
BstDEI CTNAG 4 cut(s) 487, 731, 767, 963
BstDSI CCRYGG 1 cut(s) 435
BstF5I GGATG 5 cut(s) 90, 102, 162, 213, 1044
BstFNI CGCG 6 cut(s) 57, 111, 187, 248, 599, 684
BstH2I RGCGCY 1 cut(s) 767
BstHHI GCGC 6 cut(s) 59, 113, 601, 684, 766, 886
BstKTI GATC 3 cut(s) 15, 156, 645
BstMAI GTCTC 4 cut(s) 194, 309, 869, 936
BstMBI GATC 3 cut(s) 12, 153, 642
BstMWI GCNNNNNNNGC 4 cut(s) 254, 772, 802, 869
BstNI CCWGG 2 cut(s) 173, 990
BstSCI CCNGG 2 cut(s) 171, 988
BstSFI CTRYAG 2 cut(s) 617, 667
BstSLI GKGCMC 1 cut(s) 1047
BstUI CGCG 6 cut(s) 57, 111, 187, 248, 599, 684
BstV1I GCAGC 3 cut(s) 181, 631, 691
BstV2I GAAGAC 1 cut(s) 78
BsuI GTATCC 2 cut(s) 301, 388
BsuRI GGCC 4 cut(s) 44, 177, 554, 1045
BtgI CCRYGG 1 cut(s) 435
BtrI CACGTC 2 cut(s) 97, 235
BtsCI GGATG 5 cut(s) 90, 102, 162, 213, 1044
BtsIMutI CAGTG 1 cut(s) 971
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 4 cut(s) 199, 230, 617, 870
CaiI CAGNNNCTG 1 cut(s) 451
CfoI GCGC 6 cut(s) 59, 113, 601, 684, 766, 886
Cfr13I GGNCC 5 cut(s) 4, 175, 223, 1043, 1044
CseI GACGC 2 cut(s) 176, 605
Csp6I GTAC 2 cut(s) 278, 427
CviAII CATG 4 cut(s) 220, 364, 370, 496
CviQI GTAC 2 cut(s) 278, 427
DdeI CTNAG 4 cut(s) 487, 731, 767, 963
DpnI GATC 3 cut(s) 14, 155, 644
DpnII GATC 3 cut(s) 12, 153, 642
DriI GACNNNNNGTC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 552
Eam1105I GACNNNNNGTC 1 cut(s) 130
EciI GGCGGA 2 cut(s) 878, 887
Eco147I AGGCCT 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 1047
Eco31I GGTCTC 1 cut(s) 309
Eco32I GATATC 1 cut(s) 559
Eco47I GGWCC 2 cut(s) 4, 223
Eco72I CACGTG 1 cut(s) 82
Eco88I CYCGRG 2 cut(s) 334, 750
EcoO109I RGGNCCY 1 cut(s) 1043
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 2 cut(s) 171, 988
EcoRV GATATC 1 cut(s) 559
EcoT38I GRGCYC 1 cut(s) 1047
Esp3I CGTCTC 3 cut(s) 194, 869, 936
FaeI CATG 4 cut(s) 223, 367, 373, 499
FaiI YATR 6 cut(s) 221, 282, 287, 365, 371, 497
FatI CATG 4 cut(s) 219, 363, 369, 495
FblI GTMKAC 2 cut(s) 636, 959
Fnu4HI GCNGC 5 cut(s) 195, 432, 620, 654, 680
FokI GGATG 5 cut(s) 77, 89, 149, 200, 1051
FriOI GRGCYC 1 cut(s) 1047
Fsp4HI GCNGC 5 cut(s) 195, 432, 620, 654, 680
FspBI CTAG 1 cut(s) 569
GlaI GCGC 6 cut(s) 58, 112, 600, 683, 765, 885
GluI GCNGC 5 cut(s) 195, 432, 620, 654, 680
GsaI CCCAGC 2 cut(s) 1037, 1050
GsuI CTGGAG 1 cut(s) 797
HaeII RGCGCY 1 cut(s) 767
HaeIII GGCC 4 cut(s) 44, 177, 554, 1045
HapII CCGG 3 cut(s) 7, 602, 817
HgaI GACGC 2 cut(s) 176, 605
HhaI GCGC 6 cut(s) 59, 113, 601, 684, 766, 886
Hin1II CATG 4 cut(s) 223, 367, 373, 499
Hin6I GCGC 6 cut(s) 57, 111, 599, 682, 764, 884
HinP1I GCGC 6 cut(s) 57, 111, 599, 682, 764, 884
HincII GTYRAC 2 cut(s) 747, 960
HindII GTYRAC 2 cut(s) 747, 960
HinfI GANTC 9 cut(s) 448, 576, 605, 733, 748, 842, 956, 961, 973
HpaII CCGG 3 cut(s) 7, 602, 817
HphI GGTGA 4 cut(s) 229, 430, 859, 925
Hpy166II GTNNAC 4 cut(s) 637, 747, 814, 960
Hpy188I TCNGA 8 cut(s) 145, 314, 344, 388, 453, 490, 544, 742
Hpy188III TCNNGA 3 cut(s) 294, 811, 983
Hpy8I GTNNAC 4 cut(s) 637, 747, 814, 960
Hpy99I CGWCG 7 cut(s) 101, 133, 136, 187, 257, 599, 833
HpyAV CCTTC 1 cut(s) 874
HpyCH4III ACNGT 3 cut(s) 77, 277, 922
HpyCH4IV ACGT 4 cut(s) 81, 96, 234, 398
HpyCH4V TGCA 5 cut(s) 201, 207, 232, 619, 679
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 772, 802, 869
HpyF3I CTNAG 4 cut(s) 487, 731, 767, 963
HpySE526I ACGT 4 cut(s) 81, 96, 234, 398
Hsp92II CATG 4 cut(s) 223, 367, 373, 499
HspAI GCGC 6 cut(s) 57, 111, 599, 682, 764, 884
Kzo9I GATC 3 cut(s) 12, 153, 642
LmnI GCTCC 1 cut(s) 865
Lsp1109I GCAGC 3 cut(s) 181, 631, 691
MaeI CTAG 1 cut(s) 569
MaeII ACGT 4 cut(s) 81, 96, 234, 398
MaeIII GTNAC 5 cut(s) 77, 235, 350, 473, 1005
MalI GATC 3 cut(s) 14, 155, 644
MboI GATC 3 cut(s) 12, 153, 642
MboII GAAGA 2 cut(s) 22, 78
MhlI GDGCHC 1 cut(s) 1047
MluCI AATT 2 cut(s) 538, 687
MluI ACGCGT 1 cut(s) 246
MlyI GAGTC 6 cut(s) 614, 742, 742, 851, 955, 965
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 1 cut(s) 702
MslI CAYNNNNRTG 2 cut(s) 218, 368
MspA1I CMGCKG 1 cut(s) 622
MspI CCGG 3 cut(s) 7, 602, 817
MspR9I CCNGG 2 cut(s) 173, 990
MvaI CCWGG 2 cut(s) 173, 990
MvnI CGCG 6 cut(s) 57, 111, 187, 248, 599, 684
MwoI GCNNNNNNNGC 4 cut(s) 254, 772, 802, 869
NdeII GATC 3 cut(s) 12, 153, 642
NlaIII CATG 4 cut(s) 223, 367, 373, 499
NlaIV GGNNCC 2 cut(s) 1044, 1045
NmuCI GTSAC 2 cut(s) 77, 235
PaqCI CACCTGC 1 cut(s) 212
PceI AGGCCT 1 cut(s) 44
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 137
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 3 cut(s) 448, 576, 973
PflMI CCANNNNNTGG 1 cut(s) 1016
PkrI GCNGC 5 cut(s) 196, 433, 621, 655, 681
PleI GAGTC 6 cut(s) 613, 741, 742, 850, 955, 964
PmaCI CACGTG 1 cut(s) 82
PmlI CACGTG 1 cut(s) 82
PpsI GAGTC 6 cut(s) 613, 741, 742, 850, 955, 964
Ppu21I YACGTR 2 cut(s) 82, 399
Psp6I CCWGG 2 cut(s) 171, 988
PspCI CACGTG 1 cut(s) 82
PspFI CCCAGC 2 cut(s) 1033, 1046
PspGI CCWGG 2 cut(s) 171, 988
PspN4I GGNNCC 2 cut(s) 1044, 1045
PspOMI GGGCCC 1 cut(s) 1043
PspPI GGNCC 5 cut(s) 4, 175, 223, 1043, 1044
PstI CTGCAG 1 cut(s) 621
PstNI CAGNNNCTG 1 cut(s) 451
RsaI GTAC 2 cut(s) 279, 428
RsaNI GTAC 2 cut(s) 278, 427
RseI CAYNNNNRTG 2 cut(s) 218, 368
SalI GTCGAC 1 cut(s) 958
SaqAI TTAA 1 cut(s) 702
SatI GCNGC 5 cut(s) 195, 432, 620, 654, 680
Sau3AI GATC 3 cut(s) 12, 153, 642
Sau96I GGNCC 5 cut(s) 4, 175, 223, 1043, 1044
SchI GAGTC 6 cut(s) 614, 742, 742, 851, 955, 965
ScrFI CCNGG 2 cut(s) 173, 990
SduI GDGCHC 1 cut(s) 1047
SfcI CTRYAG 2 cut(s) 617, 667
SinI GGWCC 2 cut(s) 4, 223
SmiMI CAYNNNNRTG 2 cut(s) 218, 368
Sse9I AATT 2 cut(s) 538, 687
SseBI AGGCCT 1 cut(s) 44
SsiI CCGC 8 cut(s) 55, 109, 226, 432, 622, 653, 863, 872
SspMI CTAG 1 cut(s) 569
StuI AGGCCT 1 cut(s) 44
StyD4I CCNGG 2 cut(s) 171, 988
TaaI ACNGT 3 cut(s) 77, 277, 922
TaiI ACGT 4 cut(s) 84, 99, 237, 401
TaqI TCGA 5 cut(s) 24, 168, 561, 711, 959
TasI AATT 2 cut(s) 538, 687
TauI GCSGC 2 cut(s) 434, 656
TfiI GAWTC 3 cut(s) 448, 576, 973
Tru1I TTAA 1 cut(s) 702
Tru9I TTAA 1 cut(s) 702
TscAI CASTG 1 cut(s) 971
TseFI GTSAC 2 cut(s) 77, 235
TseI GCWGC 3 cut(s) 194, 619, 679
Tsp45I GTSAC 2 cut(s) 77, 235
TspDTI ATGAA 2 cut(s) 295, 512
TspGWI ACGGA 2 cut(s) 129, 966
TspRI CASTG 1 cut(s) 971
Van91I CCANNNNNTGG 1 cut(s) 1016
VpaK11BI GGWCC 2 cut(s) 4, 223
XapI RAATTY 2 cut(s) 538, 687
XmiI GTMKAC 2 cut(s) 636, 959
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.