Rorug07G0310200

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0015640
Physical Location & Seq
Forward (+)
31067364 .. 31071919
4556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0310200.1

Sequence Viewer

Length: 1032 bp
ATGGCGAGCATGAGGAGGATGAAGCTCGGGTCACAAGGCCTGGAGGTCTCAGCTCAAGGACTGGGCTGCATGGGCATGTCTGCCTTCTATGGCGCCCCGAAGCCCGAACCCGACATGATCAAGCTCATCCACCACGCCATCGACTCCGGCGTCACCTTCCTCGACACCGCCGACCTGTACGGTCCCCACACCAACGAAATTCTCCTCGGCAAGGCTTTGAGTGGAGGGGTGAGAGACAAGGTTGAACTGGCCACCAAATTCGGTATCAGGTTTGCGGACAACAAAATGGAGGTTCAAGGCGACCCGGCATATGTGAGAGCTGCTTGTGAAGGAAGCTTGAAACGCCTTGGTGTTGCTTCTGTTGATCTCTGTTATCAGATTAGGATTGACACCCGTGTCCCCATTGAAGTCACGGTGGGGGAGCTCAAGAAGCTAATTGAAGAGGGTAAAATAAAGTACATCGGTCTGTCTGAGGCGTCAGCTTCAACAATAAGAAGAGCCCATGCTGTTCATCCAATAACTGCTGTGCAGCTGGAGTGGTCCTTGTGGTCAAGAGATGTAGAGGAAGAAATAATCCCTACTTGTCGGGAACTTGGCATTGGCATTGTTGCATACAGTCCTCTAGGAAGAGGATTCTTATCATCGGGGGCAAATTTCATCGAAAATCTTCCCAATGATGATGCTCGAAAGAATATGCCCAGGTTCCAAGCTGAAAACCTAGAGCATAATAAAACAATATTTGAGCGAGTAAGTGATCTTGCAACAAGGAAGGGTTGCACCCCATCTCAACTAGCACTGGCCTGGGTTCATCACCAAGGAAATGATGTGTGCCCTATACCCGGAACCACCAAGATTGAGAATTTTAACCAGAACATTAAGGCTCTATCTGTGAAACTGACACCAGAAGAAATGGCCGAGCTTGAATCTTTTGCTTCCCCAGATGCTGTTAAGGGCGACAGATATCCGACTAGCTGCAACAGTACTTGGATGAACTCTGACACTCCACCACTGTCTTCATGGAAAGCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

343

Amino Acids

37.59

Weight (kDa)

6.1

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 310 2.1e-69 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015640)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g36220
malus_domestica MD08G1190800.v1.1 MD15G1378100.v1.1
prunus_persica Prupe.1G524700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0238041
rosa_laevigata RLG00000000945
rosa_multiflora Rmu_co8251785.1_g000001 Rmu_sc0002586.1_g000013 Rmu_sc0021174.1_g000001
rosa_roxburghii Rroxscaffold_3G00223430
rosa_rugosa Rorug07G0310200
rosa_samantha Rh7AG465400 Rh7BG436200 Rh7CG483600 Rh7DG452100
rosa_wichuraiana Rw7G038550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 149, 395
AccB1I GGYRCC 1 cut(s) 92
AciI CCGC 2 cut(s) 168, 275
AcoI YGGCCR 2 cut(s) 249, 912
AcsI RAATTY 4 cut(s) 198, 257, 652, 859
AcyI GRCGYC 3 cut(s) 93, 150, 476
AfaI GTAC 3 cut(s) 179, 458, 982
AfiI CCNNNNNNNGG 2 cut(s) 211, 839
AgsI TTSAA 7 cut(s) 245, 296, 340, 407, 440, 486, 923
AjnI CCWGG 3 cut(s) 39, 698, 800
AjuI GAANNNNNNNTTGG 2 cut(s) 582, 614
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 2 cut(s) 52, 228
AlwNI CAGNNNCTG 1 cut(s) 944
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 4 cut(s) 37, 249, 798, 912
ApeKI GCWGC 4 cut(s) 66, 320, 529, 972
ApoI RAATTY 4 cut(s) 198, 257, 652, 859
Asp700I GAANNNNTTC 1 cut(s) 666
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 2 cut(s) 182, 540
AsuC2I CCSGG 2 cut(s) 305, 840
AsuHPI GGTGA 3 cut(s) 145, 241, 803
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 2 cut(s) 182, 540
BaeGI GKGCMC 1 cut(s) 833
BalI TGGCCA 1 cut(s) 251
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 2 cut(s) 426, 502
BbsI GAAGAC 1 cut(s) 1005
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 4 cut(s) 53, 307, 541, 959
BccI CCATC 2 cut(s) 146, 790
BciT130I CCWGG 3 cut(s) 41, 700, 802
BclI TGATCA 1 cut(s) 117
BcnI CCSGG 2 cut(s) 305, 840
BcoDI GTCTC 2 cut(s) 52, 228
BfaI CTAG 4 cut(s) 623, 719, 791, 969
BfoI RGCGCY 1 cut(s) 96
BisI GCNGC 4 cut(s) 67, 321, 530, 973
BlsI GCNGC 4 cut(s) 68, 322, 531, 974
BmcAI AGTACT 1 cut(s) 982
Bme1390I CCNGG 5 cut(s) 41, 305, 700, 802, 840
Bme18I GGWCC 2 cut(s) 182, 540
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 2 cut(s) 182, 540
BmiI GGNNCC 4 cut(s) 94, 184, 704, 844
BmrFI CCNGG 5 cut(s) 41, 305, 700, 802, 840
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 670, 931
BmuI ACTGGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 1005
BpmI CTGGAG 2 cut(s) 62, 554
BpuEI CTTGAG 2 cut(s) 39, 410
BpuMI CCSGG 2 cut(s) 305, 840
BsaBI GATNNNNATC 1 cut(s) 637
BsaHI GRCGYC 3 cut(s) 93, 150, 476
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 5 cut(s) 205, 346, 698, 801, 814
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 839
Bse1I ACTGG 3 cut(s) 66, 252, 801
Bse8I GATNNNNATC 1 cut(s) 637
BseBI CCWGG 3 cut(s) 41, 700, 802
BseDI CCNNGG 5 cut(s) 205, 346, 698, 801, 814
BseGI GGATG 4 cut(s) 24, 126, 511, 993
BseJI GATNNNNATC 1 cut(s) 637
BseLI CCNNNNNNNGG 2 cut(s) 211, 839
BseMII CTCAG 2 cut(s) 63, 462
BseNI ACTGG 3 cut(s) 66, 252, 801
BseRI GAGGAG 2 cut(s) 28, 194
BseSI GKGCMC 1 cut(s) 833
BseXI GCAGC 4 cut(s) 53, 307, 541, 959
BsgI GTGCAG 1 cut(s) 548
BshFI GGCC 4 cut(s) 39, 251, 800, 914
BshNI GGYRCC 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 426
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 3 cut(s) 147, 305, 840
BslFI GGGAC 2 cut(s) 168, 383
BslI CCNNNNNNNGG 2 cut(s) 211, 839
BsmAI GTCTC 2 cut(s) 52, 228
BsmFI GGGAC 2 cut(s) 168, 383
BsnI GGCC 4 cut(s) 39, 251, 800, 914
Bso31I GGTCTC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 3 cut(s) 426, 502, 833
Bsp143I GATC 3 cut(s) 117, 364, 754
BspACI CCGC 2 cut(s) 168, 275
BspANI GGCC 4 cut(s) 39, 251, 800, 914
BspCNI CTCAG 2 cut(s) 62, 463
BspLI GGNNCC 4 cut(s) 94, 184, 704, 844
BspQI GCTCTTC 1 cut(s) 490
BspT107I GGYRCC 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 52
BsrI ACTGG 3 cut(s) 66, 252, 801
BssECI CCNNGG 5 cut(s) 205, 346, 698, 801, 814
BssMI GATC 3 cut(s) 117, 364, 754
BssNI GRCGYC 3 cut(s) 93, 150, 476
BssT1I CCWWGG 2 cut(s) 346, 814
Bst2UI CCWGG 3 cut(s) 41, 700, 802
Bst4CI ACNGT 5 cut(s) 182, 415, 617, 980, 1011
Bst6I CTCTTC 3 cut(s) 435, 490, 622
BstACI GRCGYC 3 cut(s) 93, 150, 476
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 49, 471
BstENI CCTNNNNNAGG 1 cut(s) 209
BstF5I GGATG 4 cut(s) 24, 126, 511, 993
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 3 cut(s) 120, 367, 757
BstMAI GTCTC 2 cut(s) 52, 228
BstMBI GATC 3 cut(s) 117, 364, 754
BstMWI GCNNNNNNNGC 3 cut(s) 72, 342, 430
BstNI CCWGG 3 cut(s) 41, 700, 802
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 5 cut(s) 39, 303, 698, 800, 838
BstSLI GKGCMC 1 cut(s) 833
BstV1I GCAGC 4 cut(s) 53, 307, 541, 959
BstV2I GAAGAC 1 cut(s) 1005
BsuRI GGCC 4 cut(s) 39, 251, 800, 914
BtsCI GGATG 4 cut(s) 24, 126, 511, 993
BtsIMutI CAGTG 2 cut(s) 794, 1007
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 1 cut(s) 944
CfoI GCGC 1 cut(s) 95
Cfr13I GGNCC 2 cut(s) 182, 540
CseI GACGC 2 cut(s) 139, 465
Csp6I GTAC 3 cut(s) 178, 457, 981
CspCI CAANNNNNGTGG 2 cut(s) 835, 870
CviAII CATG 6 cut(s) 10, 70, 76, 115, 503, 1017
CviQI GTAC 3 cut(s) 178, 457, 981
DdeI CTNAG 2 cut(s) 49, 471
DinI GGCGCC 1 cut(s) 94
DpnI GATC 3 cut(s) 119, 366, 756
DpnII GATC 3 cut(s) 117, 364, 754
DrdI GACNNNNNNGTC 2 cut(s) 149, 395
DseDI GACNNNNNNGTC 2 cut(s) 149, 395
EaeI YGGCCR 2 cut(s) 249, 912
Eam1104I CTCTTC 3 cut(s) 435, 490, 622
EarI CTCTTC 3 cut(s) 435, 490, 622
Ecl136II GAGCTC 1 cut(s) 424
Eco130I CCWWGG 2 cut(s) 346, 814
Eco147I AGGCCT 1 cut(s) 39
Eco24I GRGCYC 2 cut(s) 426, 502
Eco31I GGTCTC 1 cut(s) 52
Eco32I GATATC 1 cut(s) 962
Eco47I GGWCC 2 cut(s) 182, 540
Eco53kI GAGCTC 1 cut(s) 424
Eco88I CYCGRG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 424
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoRII CCWGG 3 cut(s) 39, 698, 800
EcoRV GATATC 1 cut(s) 962
EcoT14I CCWWGG 2 cut(s) 346, 814
EcoT38I GRGCYC 2 cut(s) 426, 502
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
ErhI CCWWGG 2 cut(s) 346, 814
FaeI CATG 6 cut(s) 13, 73, 79, 118, 506, 1020
FaqI GGGAC 2 cut(s) 168, 383
FatI CATG 6 cut(s) 9, 69, 75, 114, 502, 1016
FauNDI CATATG 1 cut(s) 310
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 4 cut(s) 67, 321, 530, 973
FokI GGATG 4 cut(s) 31, 113, 498, 1000
FriOI GRGCYC 2 cut(s) 426, 502
Fsp4HI GCNGC 4 cut(s) 67, 321, 530, 973
FspBI CTAG 4 cut(s) 623, 719, 791, 969
GlaI GCGC 1 cut(s) 94
GluI GCNGC 4 cut(s) 67, 321, 530, 973
GsuI CTGGAG 2 cut(s) 62, 554
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 4 cut(s) 39, 251, 800, 914
HapII CCGG 3 cut(s) 147, 305, 840
HgaI GACGC 2 cut(s) 139, 465
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 3 cut(s) 93, 150, 476
Hin1II CATG 6 cut(s) 13, 73, 79, 118, 506, 1020
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HindIII AAGCTT 1 cut(s) 334
HinfI GANTC 3 cut(s) 143, 633, 923
HpaII CCGG 3 cut(s) 147, 305, 840
HphI GGTGA 3 cut(s) 145, 241, 803
Hpy188I TCNGA 4 cut(s) 378, 472, 966, 997
Hpy188III TCNNGA 3 cut(s) 427, 552, 587
HpyAV CCTTC 4 cut(s) 94, 166, 323, 763
HpyCH4III ACNGT 5 cut(s) 182, 415, 617, 980, 1011
HpyCH4V TGCA 6 cut(s) 69, 529, 611, 761, 777, 975
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 342, 430
HpyF3I CTNAG 2 cut(s) 49, 471
Hsp92I GRCGYC 3 cut(s) 93, 150, 476
Hsp92II CATG 6 cut(s) 13, 73, 79, 118, 506, 1020
HspAI GCGC 1 cut(s) 93
KasI GGCGCC 1 cut(s) 92
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 3 cut(s) 117, 364, 754
LguI GCTCTTC 1 cut(s) 490
LmnI GCTCC 1 cut(s) 421
Lsp1109I GCAGC 4 cut(s) 53, 307, 541, 959
LweI GCATC 2 cut(s) 670, 931
MaeI CTAG 4 cut(s) 623, 719, 791, 969
MaeIII GTNAC 3 cut(s) 30, 151, 409
MalI GATC 3 cut(s) 119, 366, 756
MboI GATC 3 cut(s) 117, 364, 754
MboII GAAGA 7 cut(s) 452, 507, 578, 639, 659, 917, 1005
MhlI GDGCHC 3 cut(s) 426, 502, 833
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 5 cut(s) 198, 257, 435, 652, 859
MluNI TGGCCA 1 cut(s) 251
Mly113I GGCGCC 1 cut(s) 93
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 989
Mox20I TGGCCA 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 666
MscI TGGCCA 1 cut(s) 251
MseI TTAA 3 cut(s) 864, 876, 948
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 3 cut(s) 147, 305, 840
MspR9I CCNGG 5 cut(s) 41, 305, 700, 802, 840
MvaI CCWGG 3 cut(s) 41, 700, 802
MwoI GCNNNNNNNGC 3 cut(s) 72, 342, 430
NarI GGCGCC 1 cut(s) 93
NciI CCSGG 2 cut(s) 305, 840
NdeI CATATG 1 cut(s) 310
NdeII GATC 3 cut(s) 117, 364, 754
NlaIII CATG 6 cut(s) 13, 73, 79, 118, 506, 1020
NlaIV GGNNCC 4 cut(s) 94, 184, 704, 844
NmeAIII GCCGAG 2 cut(s) 186, 940
NmuCI GTSAC 3 cut(s) 30, 151, 409
NspI RCATGY 1 cut(s) 79
PceI AGGCCT 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 490
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 168
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 2 cut(s) 633, 923
PkrI GCNGC 4 cut(s) 68, 322, 531, 974
PleI GAGTC 1 cut(s) 137
PluTI GGCGCC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 137
Psp124BI GAGCTC 1 cut(s) 426
Psp6I CCWGG 3 cut(s) 39, 698, 800
PspGI CCWGG 3 cut(s) 39, 698, 800
PspN4I GGNNCC 4 cut(s) 94, 184, 704, 844
PspPI GGNCC 2 cut(s) 182, 540
PstNI CAGNNNCTG 1 cut(s) 944
PvuII CAGCTG 1 cut(s) 532
RsaI GTAC 3 cut(s) 179, 458, 982
RsaNI GTAC 3 cut(s) 178, 457, 981
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 426
SapI GCTCTTC 1 cut(s) 490
SaqAI TTAA 3 cut(s) 864, 876, 948
SatI GCNGC 4 cut(s) 67, 321, 530, 973
Sau3AI GATC 3 cut(s) 117, 364, 754
Sau96I GGNCC 2 cut(s) 182, 540
ScaI AGTACT 1 cut(s) 982
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 5 cut(s) 41, 305, 700, 802, 840
SduI GDGCHC 3 cut(s) 426, 502, 833
SfaNI GCATC 2 cut(s) 670, 931
SfoI GGCGCC 1 cut(s) 94
SinI GGWCC 2 cut(s) 182, 540
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 54, 425
SmoI CTYRAG 2 cut(s) 54, 425
Sse9I AATT 5 cut(s) 198, 257, 435, 652, 859
SseBI AGGCCT 1 cut(s) 39
SsiI CCGC 2 cut(s) 168, 275
SspDI GGCGCC 1 cut(s) 92
SspI AATATT 1 cut(s) 738
SspMI CTAG 4 cut(s) 623, 719, 791, 969
SstI GAGCTC 1 cut(s) 426
StuI AGGCCT 1 cut(s) 39
StyD4I CCNGG 5 cut(s) 39, 303, 698, 800, 838
StyI CCWWGG 2 cut(s) 346, 814
TaaI ACNGT 5 cut(s) 182, 415, 617, 980, 1011
TaqI TCGA 4 cut(s) 141, 162, 660, 685
TaqII GACCGA 1 cut(s) 452
TasI AATT 5 cut(s) 198, 257, 435, 652, 859
TatI WGTACW 2 cut(s) 456, 980
TfiI GAWTC 2 cut(s) 633, 923
Tru1I TTAA 3 cut(s) 864, 876, 948
Tru9I TTAA 3 cut(s) 864, 876, 948
TscAI CASTG 2 cut(s) 801, 1014
TseFI GTSAC 3 cut(s) 30, 151, 409
TseI GCWGC 4 cut(s) 66, 320, 529, 972
Tsp45I GTSAC 3 cut(s) 30, 151, 409
TspDTI ATGAA 6 cut(s) 35, 500, 646, 797, 1004, 1005
TspRI CASTG 2 cut(s) 801, 1014
VpaK11BI GGWCC 2 cut(s) 182, 540
XagI CCTNNNNNAGG 1 cut(s) 209
XapI RAATTY 4 cut(s) 198, 257, 652, 859
XceI RCATGY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 1014
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 4 cut(s) 623, 719, 791, 969
ZrmI AGTACT 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.