Rmu_co8251785.1_g000001

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8251785.1
OG0015640
Physical Location & Seq
Forward (+)
1 .. 791
791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8251785.1_g000001.1.cds

Sequence Viewer

Length: 791 bp
ccgtcgtcgccgccgtccgaggaaagaatcgccgacatcctcgacctgggccggtcgtctcgtctcgctgcgtgcacctgcattgacatcctcatggaccgcctgcacgtcacccagaacgcgttcgtcgcgctgaaatgcctctacaccgtacataacatagtatccagaggttcgttcattttcagagatcagatttcttaccacccgagtttcggagggcgtaacttcctcaacatgaccatgttcagcgacaaatcggatttggatacgtgggagttttcgttatgggtgaggtggtacgccgccgtggtggaacagaatctgatggtggcgagggcaatcggttactatctaaactcagaaaacatgaaagcagaaaatcataataaggttgtggtggctctgttgaattctgatttggtggccgatatcgaagtgctagtgggattcgtggcgaggattagcgacgcgccggagtcattgagcctccagcggaacgatttggtctacgagatcgtcaaggcggcgagtgaggactacaggacggtgcagcgcgaaatttcggttcgggttaaagaagtcgaggacagagtggagaggctgagtctgtccgagttgactcgggtggtggaggcgctgaggaggctggaggattgtaaggagaggctggtgttgctgttcgtgaaccggaaaaggaacgacgggctgtgggaatcggtgaggaaaacgagggcggagctggcggagacgaaggcgcagagagaggagaggaggctggtggtggtgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

263

Amino Acids

30.27

Weight (kDa)

6.2

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015640)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g36220
malus_domestica MD08G1190800.v1.1 MD15G1378100.v1.1
prunus_persica Prupe.1G524700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0238041
rosa_laevigata RLG00000000945
rosa_multiflora Rmu_co8251785.1_g000001 Rmu_sc0002586.1_g000013 Rmu_sc0021174.1_g000001
rosa_roxburghii Rroxscaffold_3G00223430
rosa_rugosa Rorug07G0310200
rosa_samantha Rh7AG465400 Rh7BG436200 Rh7CG483600 Rh7DG452100
rosa_wichuraiana Rw7G038550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 86
AccI GTMKAC 1 cut(s) 510
AccII CGCG 4 cut(s) 122, 131, 473, 558
AciI CCGC 7 cut(s) 11, 100, 306, 496, 527, 737, 746
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 2 cut(s) 412, 561
AfaI GTAC 2 cut(s) 153, 302
AfiI CCNNNNNNNGG 2 cut(s) 46, 215
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 1 cut(s) 412
AjiI CACGTC 1 cut(s) 109
AjnI CCWGG 1 cut(s) 45
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AluBI AGCT 1 cut(s) 742
AluI AGCT 1 cut(s) 742
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 3 cut(s) 63, 68, 743
Alw44I GTGCAC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 325
Ama87I CYCGRG 2 cut(s) 208, 624
AoxI GGCC 2 cut(s) 49, 426
ApaLI GTGCAC 1 cut(s) 73
ApeKI GCWGC 2 cut(s) 68, 553
ApoI RAATTY 2 cut(s) 412, 561
Asp700I GAANNNNTTC 1 cut(s) 122
AspLEI GCGC 5 cut(s) 133, 475, 558, 640, 760
AspS9I GGNCC 2 cut(s) 49, 97
AsuHPI GGTGA 3 cut(s) 103, 304, 733
AvaI CYCGRG 2 cut(s) 208, 624
AvaII GGWCC 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 77
BbvCI CCTCAGC 1 cut(s) 641
BbvI GCAGC 2 cut(s) 55, 565
BccI CCATC 1 cut(s) 322
BceAI ACGGC 1 cut(s) 293
BciT130I CCWGG 1 cut(s) 47
BciVI GTATCC 2 cut(s) 175, 262
BcoDI GTCTC 3 cut(s) 63, 68, 743
BfaI CTAG 1 cut(s) 443
BfmI CTRYAG 1 cut(s) 541
BfoI RGCGCY 1 cut(s) 641
BfuAI ACCTGC 1 cut(s) 86
BfuI GTATCC 2 cut(s) 175, 262
BisI GCNGC 5 cut(s) 11, 69, 306, 528, 554
BlsI GCNGC 5 cut(s) 12, 70, 307, 529, 555
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 97
BmeT110I CYCGRG 2 cut(s) 208, 624
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 2 cut(s) 49, 97
BmrFI CCNGG 1 cut(s) 47
BpmI CTGGAG 2 cut(s) 476, 671
Bpu10I CCTNAGC 1 cut(s) 641
BsaAI YACGTR 1 cut(s) 273
BsaJI CCNNGG 3 cut(s) 18, 46, 309
BsaWI WCCGGW 1 cut(s) 690
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 215
Bse118I RCCGGY 1 cut(s) 51
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 3 cut(s) 18, 46, 309
BseGI GGATG 2 cut(s) 36, 87
BseLI CCNNNNNNNGG 2 cut(s) 46, 215
BseMII CTCAG 3 cut(s) 375, 596, 632
BseRI GAGGAG 3 cut(s) 658, 782, 787
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 2 cut(s) 55, 565
BsgI GTGCAG 2 cut(s) 89, 572
Bsh1236I CGCG 4 cut(s) 122, 131, 473, 558
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 2 cut(s) 51, 428
BsiEI CGRYCG 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 77
BsiHKCI CYCGRG 2 cut(s) 208, 624
BsiSI CCGG 3 cut(s) 52, 476, 691
BslI CCNNNNNNNGG 2 cut(s) 46, 215
BsmAI GTCTC 3 cut(s) 63, 68, 743
BsmBI CGTCTC 3 cut(s) 63, 68, 743
BsnI GGCC 2 cut(s) 51, 428
BsoBI CYCGRG 2 cut(s) 208, 624
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 190, 516
BspACI CCGC 7 cut(s) 11, 100, 306, 496, 527, 737, 746
BspANI GGCC 2 cut(s) 51, 428
BspCNI CTCAG 3 cut(s) 374, 597, 633
BspFNI CGCG 4 cut(s) 122, 131, 473, 558
BspMI ACCTGC 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 51
BssAI RCCGGY 1 cut(s) 51
BssECI CCNNGG 3 cut(s) 18, 46, 309
BssMI GATC 2 cut(s) 190, 516
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 151, 550
BstBAI YACGTR 1 cut(s) 273
BstC8I GCNNGC 3 cut(s) 73, 104, 744
BstDEI CTNAG 3 cut(s) 361, 605, 641
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 2 cut(s) 36, 87
BstFNI CGCG 4 cut(s) 122, 131, 473, 558
BstH2I RGCGCY 1 cut(s) 641
BstHHI GCGC 5 cut(s) 133, 475, 558, 640, 760
BstKTI GATC 2 cut(s) 193, 519
BstMAI GTCTC 3 cut(s) 63, 68, 743
BstMBI GATC 2 cut(s) 190, 516
BstMCI CGRYCG 1 cut(s) 56
BstMWI GCNNNNNNNGC 4 cut(s) 128, 646, 676, 743
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 541
BstSLI GKGCMC 1 cut(s) 77
BstUI CGCG 4 cut(s) 122, 131, 473, 558
BstV1I GCAGC 2 cut(s) 55, 565
BsuI GTATCC 2 cut(s) 175, 262
BsuRI GGCC 2 cut(s) 51, 428
BtgI CCRYGG 1 cut(s) 309
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 2 cut(s) 36, 87
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 3 cut(s) 73, 104, 744
CaiI CAGNNNCTG 1 cut(s) 325
CfoI GCGC 5 cut(s) 133, 475, 558, 640, 760
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 2 cut(s) 49, 97
CseI GACGC 1 cut(s) 479
Csp6I GTAC 2 cut(s) 152, 301
CviAII CATG 4 cut(s) 94, 238, 244, 370
CviQI GTAC 2 cut(s) 152, 301
DdeI CTNAG 3 cut(s) 361, 605, 641
DpnI GATC 2 cut(s) 192, 518
DpnII GATC 2 cut(s) 190, 516
EaeI YGGCCR 1 cut(s) 426
EciI GGCGGA 2 cut(s) 752, 761
Eco32I GATATC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 97
Eco88I CYCGRG 2 cut(s) 208, 624
EcoRI GAATTC 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 45
EcoRV GATATC 1 cut(s) 433
Esp3I CGTCTC 3 cut(s) 63, 68, 743
FaeI CATG 4 cut(s) 97, 241, 247, 373
FaiI YATR 8 cut(s) 95, 156, 161, 239, 245, 289, 371, 387
FatI CATG 4 cut(s) 93, 237, 243, 369
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 5 cut(s) 11, 69, 306, 528, 554
FokI GGATG 2 cut(s) 23, 74
Fsp4HI GCNGC 5 cut(s) 11, 69, 306, 528, 554
FspBI CTAG 1 cut(s) 443
GlaI GCGC 5 cut(s) 132, 474, 557, 639, 759
GluI GCNGC 5 cut(s) 11, 69, 306, 528, 554
GsuI CTGGAG 2 cut(s) 476, 671
HaeII RGCGCY 1 cut(s) 641
HaeIII GGCC 2 cut(s) 51, 428
HapII CCGG 3 cut(s) 52, 476, 691
HgaI GACGC 1 cut(s) 479
HhaI GCGC 5 cut(s) 133, 475, 558, 640, 760
Hin1II CATG 4 cut(s) 97, 241, 247, 373
Hin6I GCGC 5 cut(s) 131, 473, 556, 638, 758
HinP1I GCGC 5 cut(s) 131, 473, 556, 638, 758
HincII GTYRAC 1 cut(s) 621
HindII GTYRAC 1 cut(s) 621
HinfI GANTC 7 cut(s) 27, 322, 450, 479, 607, 622, 716
HpaII CCGG 3 cut(s) 52, 476, 691
HphI GGTGA 3 cut(s) 103, 304, 733
Hpy166II GTNNAC 4 cut(s) 75, 511, 621, 688
Hpy188I TCNGA 9 cut(s) 19, 188, 195, 218, 262, 327, 364, 418, 616
Hpy188III TCNNGA 2 cut(s) 168, 685
Hpy8I GTNNAC 4 cut(s) 75, 511, 621, 688
Hpy99I CGWCG 5 cut(s) 7, 10, 131, 473, 707
HpyAV CCTTC 1 cut(s) 748
HpyCH4III ACNGT 2 cut(s) 151, 550
HpyCH4IV ACGT 2 cut(s) 108, 272
HpyCH4V TGCA 4 cut(s) 75, 81, 106, 553
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 646, 676, 743
HpyF3I CTNAG 3 cut(s) 361, 605, 641
HpySE526I ACGT 2 cut(s) 108, 272
Hsp92II CATG 4 cut(s) 97, 241, 247, 373
HspAI GCGC 5 cut(s) 131, 473, 556, 638, 758
Kzo9I GATC 2 cut(s) 190, 516
LmnI GCTCC 1 cut(s) 739
Lsp1109I GCAGC 2 cut(s) 55, 565
MaeI CTAG 1 cut(s) 443
MaeII ACGT 2 cut(s) 108, 272
MaeIII GTNAC 3 cut(s) 109, 224, 347
MalI GATC 2 cut(s) 192, 518
MboI GATC 2 cut(s) 190, 516
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 2 cut(s) 412, 561
MluI ACGCGT 1 cut(s) 120
MlyI GAGTC 3 cut(s) 488, 616, 616
MroXI GAANNNNTTC 1 cut(s) 122
MseI TTAA 1 cut(s) 576
MslI CAYNNNNRTG 2 cut(s) 92, 242
MspA1I CMGCKG 1 cut(s) 496
MspI CCGG 3 cut(s) 52, 476, 691
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 4 cut(s) 122, 131, 473, 558
MwoI GCNNNNNNNGC 4 cut(s) 128, 646, 676, 743
NdeII GATC 2 cut(s) 190, 516
NlaIII CATG 4 cut(s) 97, 241, 247, 373
NmuCI GTSAC 1 cut(s) 109
PaqCI CACCTGC 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 4 cut(s) 27, 322, 450, 716
PkrI GCNGC 5 cut(s) 12, 70, 307, 529, 555
PleI GAGTC 3 cut(s) 487, 615, 616
PpsI GAGTC 3 cut(s) 487, 615, 616
Ppu21I YACGTR 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspPI GGNCC 2 cut(s) 49, 97
PstNI CAGNNNCTG 1 cut(s) 325
RsaI GTAC 2 cut(s) 153, 302
RsaNI GTAC 2 cut(s) 152, 301
RseI CAYNNNNRTG 2 cut(s) 92, 242
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 5 cut(s) 11, 69, 306, 528, 554
Sau3AI GATC 2 cut(s) 190, 516
Sau96I GGNCC 2 cut(s) 49, 97
SchI GAGTC 3 cut(s) 488, 616, 616
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 77
SetI ASST 8 cut(s) 48, 80, 111, 175, 275, 299, 396, 744
SfcI CTRYAG 1 cut(s) 541
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 2 cut(s) 92, 242
Sse9I AATT 2 cut(s) 412, 561
SsiI CCGC 7 cut(s) 11, 100, 306, 496, 527, 737, 746
SspMI CTAG 1 cut(s) 443
StyD4I CCNGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 151, 550
TaiI ACGT 2 cut(s) 111, 275
TaqI TCGA 3 cut(s) 42, 435, 585
TasI AATT 2 cut(s) 412, 561
TauI GCSGC 3 cut(s) 13, 308, 530
TfiI GAWTC 4 cut(s) 27, 322, 450, 716
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 2 cut(s) 68, 553
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 169, 386
VneI GTGCAC 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 2 cut(s) 412, 561
XmiI GTMKAC 1 cut(s) 510
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.