Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007515

Physical Location & Seq

Genomic Coordinates Forward (+)

44515236 .. 44519873

Gene Structure 4638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G544900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGCGACTTACACTGAATTTCATCAGCCTGATATAGCTTCAGACCGTCAACACTCCCAGGACGTATCTATCTCTCAAATTTTGGATCATGGTTCGATATCCTTTGGAAGATTTGCTGTAGAATCACTGGCATGGGAAAAATGGTCTGTTTTTCGGCACAACAGGTGTCTGGAGGAGCTTGAAATGTACAAGTCCAATGGATTGGTTGCCCAAAAGAAGGCCTACTTCGAAGACTATTACAAAAGAGTTAGAGGTCTTAAGGCATTGGAAGTGCAGCACCAAGAAACCACCCAACCTGATCCTTGCCCGGATGTGAAGATTAACACCATGCAACTGGTTTATGAGAATTGTCATGACTTGTCCAAACAGAAAACGTGCGGAAATGATACAGTTGCTAATTCAGATTCGTCATTGGGTACCACAGTGGATAAACCGAGACAAGCTAAGCAACAACCATTGAATGACTGTAATGACAATACGGATAAGGTTATCATGGCAGATGAAGCCAATAATACTTTATCTAATGTTGAACCAGAACAAGCTAGAATTGATGCTTCCTTATCATCCACTCCATCAGTCACTAGTAGCTCCAGAGCTGCCCAGCATGATAGCCTTGTCTCTGACGCTGTCAAGAATGATGCTGACAAGCCAAAGAAACACGCACCTCCTGTATTAAACGCTAAGGTTAATGCTGCTTTACCTCGAAACAAATCAAAGTTGGACTGCAGAATTACTAAAGATGCTGTTAAGTCATTGGAGAAGTCAAAACCACGCCCACTGCATATTACTTCCAAAAGGGATAACCATCTTCTTCCTAGCAAGTGCAACACTCGTGGGGCTGCCAGCAAGAATAATTCGAACCATGTTTCGTCGCGTAAAAAACTTACTGAAGTTTGCTCCAGTGCCACTGTTCCTAATCCTTCGTCAACAACAAGTAGATTGGTGCCATCTTATCCTAGTGGTAGAAGTGATCCAGAAAAGGCAAATTCAAATGAAAAAAAATTGGCTGATAGGTTACCAACAAATCTACCAGTTCTTGCACGATCTGTCCAGAATACATCAAATGAAAAATCCATTGCTTGTGGCTTGAAGAACATGGCTGTAGAGAAACGGAGCTGTATTGGAGTTTCTAGAAAGCCTACAGATTTGGGAAATCAACAGATGCAACGGAAGGTTGGCCAATCTGAGAATCAGAAACCAAAATCCATGTTTACGAATAATCCCGCTCGTGTTAACTCTGAGCGCAAGAATTATGGAAAGGAAAGAAAAGAGAAAGAGGGAAAAGAGGAAAATAACGCTGCAAACCGAAGATATCCAAAGCCCGCCTCAACTGCGACATCCAGTGTTCATAAGAATGTAAAAGTGGTGCATAAGATTGCAGAATTGAAGTCTGGAATCCTCCCACATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

471

Amino Acids

52.09

Weight (kDa)

9.49

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33320 FvH4_5g33320 FvH4_5g33320 FvH4_5g33320 FvH4_5g33320 FvH4_5g33320
malus_domestica	MD15G1395700.v1.1
prunus_persica	Prupe.1G544900_v2.0.a1 Prupe.1G544900_v2.0.a1 Prupe.1G544900_v2.0.a1
pyrus_communis	pycom15g35630
rosa_chinensis	RchiOBHm_Chr7g0232051
rosa_laevigata	RLG00000001397
rosa_multiflora	Rmu_sc0004618.1_g000018 Rmu_sc0009837.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228860 Rroxscaffold_3G00242020 Rroxscaffold_4G00331070
rosa_rugosa	Rorug07G0268700
rosa_samantha	Rh7AG423100 Rh7BG397300 Rh7CG443500 Rh7DG415400
rosa_wichuraiana	Rw0G010280 Rw7G035000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	416
AccB1I	GGYRCC	2 cut(s)	416, 943
AccBSI	CCGCTC	1 cut(s)	1226
AccII	CGCG	1 cut(s)	874
AciI	CCGC	3 cut(s)	378, 1224, 1323
AclWI	GGATC	3 cut(s)	93, 293, 965
AcoI	YGGCCR	1 cut(s)	1177
AcsI	RAATTY	3 cut(s)	17, 78, 985
AcuI	CTGAAG	2 cut(s)	24, 909
AfaI	GTAC	2 cut(s)	188, 418
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflII	CTTAAG	1 cut(s)	257
AgsI	TTSAA	6 cut(s)	182, 460, 530, 990, 1090, 1387
AhlI	ACTAGT	1 cut(s)	581
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	7 cut(s)	38, 178, 443, 542, 588, 596, 1116
AluI	AGCT	7 cut(s)	38, 178, 443, 542, 588, 596, 1116
Alw26I	GTCTC	2 cut(s)	430, 622
AlwI	GGATC	3 cut(s)	93, 293, 965
AoxI	GGCC	2 cut(s)	219, 1177
ApeKI	GCWGC	5 cut(s)	274, 596, 692, 839, 1298
ApoI	RAATTY	3 cut(s)	17, 78, 985
Asp718I	GGTACC	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	1245
AsuC2I	CCSGG	1 cut(s)	308
AsuII	TTCGAA	2 cut(s)	228, 857
BaeI	ACNNNNGTAYC	2 cut(s)	408, 441
BalI	TGGCCA	1 cut(s)	1179
BanI	GGYRCC	2 cut(s)	416, 943
BauI	CACGAG	2 cut(s)	831, 1227
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	5 cut(s)	286, 583, 679, 826, 1285
BccI	CCATC	3 cut(s)	580, 813, 955
BciT130I	CCWGG	1 cut(s)	59
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	2 cut(s)	430, 622
BcuI	ACTAGT	1 cut(s)	581
BfaI	CTAG	5 cut(s)	543, 582, 816, 957, 1131
BfmI	CTRYAG	4 cut(s)	117, 724, 1101, 1140
BfrI	CTTAAG	1 cut(s)	257
BisI	GCNGC	5 cut(s)	275, 597, 693, 840, 1299
BlpI	GCTNAGC	1 cut(s)	444
BlsI	GCNGC	5 cut(s)	276, 598, 694, 841, 1300
Bme1390I	CCNGG	2 cut(s)	59, 308
BmiI	GGNNCC	2 cut(s)	418, 945
BmrFI	CCNGG	2 cut(s)	59, 308
BmsI	GCATC	4 cut(s)	541, 628, 730, 1152
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	3 cut(s)	191, 574, 883
Bpu10I	CCTNAGC	1 cut(s)	681
Bpu1102I	GCTNAGC	1 cut(s)	444
Bpu14I	TTCGAA	2 cut(s)	228, 857
BpuMI	CCSGG	1 cut(s)	308
BsaBI	GATNNNNATC	1 cut(s)	804
BsaJI	CCNNGG	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	5 cut(s)	132, 339, 900, 1031, 1341
Bse3DI	GCAATG	1 cut(s)	1074
Bse8I	GATNNNNATC	1 cut(s)	804
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	3 cut(s)	316, 563, 1337
BseJI	GATNNNNATC	1 cut(s)	804
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	1074
BseMII	CTCAG	2 cut(s)	1176, 1230
BseNI	ACTGG	5 cut(s)	132, 339, 900, 1031, 1341
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	5 cut(s)	286, 583, 679, 826, 1285
BseYI	CCCAGC	1 cut(s)	600
BsgI	GTGCAG	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	874
BshFI	GGCC	2 cut(s)	221, 1179
BshNI	GGYRCC	2 cut(s)	416, 943
BsiSI	CCGG	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	2 cut(s)	430, 622
BsnI	GGCC	2 cut(s)	221, 1179
Bsp119I	TTCGAA	2 cut(s)	228, 857
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	4 cut(s)	85, 298, 970, 1043
Bsp1720I	GCTNAGC	1 cut(s)	444
BspACI	CCGC	3 cut(s)	378, 1224, 1323
BspANI	GGCC	2 cut(s)	221, 1179
BspCNI	CTCAG	2 cut(s)	1177, 1231
BspFNI	CGCG	1 cut(s)	874
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	418, 945
BspMAI	CTGCAG	1 cut(s)	728
BspPI	GGATC	3 cut(s)	93, 293, 965
BspT104I	TTCGAA	2 cut(s)	228, 857
BspT107I	GGYRCC	2 cut(s)	416, 943
BspTI	CTTAAG	1 cut(s)	257
BsrBI	CCGCTC	1 cut(s)	1226
BsrDI	GCAATG	1 cut(s)	1074
BsrGI	TGTACA	1 cut(s)	186
BsrI	ACTGG	5 cut(s)	132, 339, 900, 1031, 1341
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	4 cut(s)	85, 298, 970, 1043
BssSI	CACGAG	2 cut(s)	831, 1227
Bst2BI	CACGAG	2 cut(s)	831, 1227
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	5 cut(s)	47, 391, 424, 467, 910
BstAFI	CTTAAG	1 cut(s)	257
BstAUI	TGTACA	1 cut(s)	186
BstBI	TTCGAA	2 cut(s)	228, 857
BstC8I	GCNNGC	2 cut(s)	844, 1323
BstDEI	CTNAG	4 cut(s)	444, 681, 1185, 1239
BstEII	GGTNACC	1 cut(s)	1014
BstF5I	GGATG	3 cut(s)	316, 563, 1337
BstFNI	CGCG	1 cut(s)	874
BstHHI	GCGC	1 cut(s)	1245
BstKTI	GATC	4 cut(s)	88, 301, 973, 1046
BstMAI	GTCTC	2 cut(s)	430, 622
BstMBI	GATC	4 cut(s)	85, 298, 970, 1043
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 1331
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	1409
BstPI	GGTNACC	1 cut(s)	1014
BstSCI	CCNGG	2 cut(s)	57, 306
BstSFI	CTRYAG	4 cut(s)	117, 724, 1101, 1140
BstUI	CGCG	1 cut(s)	874
BstV1I	GCAGC	5 cut(s)	286, 583, 679, 826, 1285
BstV2I	GAAGAC	1 cut(s)	237
BstXI	CCANNNNNNTGG	2 cut(s)	202, 334
BsuRI	GGCC	2 cut(s)	221, 1179
BtsCI	GGATG	3 cut(s)	316, 563, 1337
BtsI	GCAGTG	1 cut(s)	776
BtsIMutI	CAGTG	7 cut(s)	12, 125, 429, 776, 906, 907, 1348
Cac8I	GCNNGC	2 cut(s)	844, 1323
CciI	TCATGA	1 cut(s)	352
CfoI	GCGC	1 cut(s)	1245
CseI	GACGC	1 cut(s)	632
Csp6I	GTAC	2 cut(s)	187, 417
CspCI	CAANNNNNGTGG	2 cut(s)	814, 849
CviQI	GTAC	2 cut(s)	187, 417
DdeI	CTNAG	4 cut(s)	444, 681, 1185, 1239
DpnI	GATC	4 cut(s)	87, 300, 972, 1045
DpnII	GATC	4 cut(s)	85, 298, 970, 1043
EaeI	YGGCCR	1 cut(s)	1177
Eco147I	AGGCCT	1 cut(s)	221
Eco32I	GATATC	2 cut(s)	99, 1313
Eco57I	CTGAAG	2 cut(s)	24, 909
Eco91I	GGTNACC	1 cut(s)	1014
EcoO65I	GGTNACC	1 cut(s)	1014
EcoRII	CCWGG	1 cut(s)	57
EcoRV	GATATC	2 cut(s)	99, 1313
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FauI	CCCGC	2 cut(s)	1231, 1330
Fnu4HI	GCNGC	5 cut(s)	275, 597, 693, 840, 1299
FokI	GGATG	3 cut(s)	323, 550, 1324
Fsp4HI	GCNGC	5 cut(s)	275, 597, 693, 840, 1299
FspBI	CTAG	5 cut(s)	543, 582, 816, 957, 1131
GlaI	GCGC	1 cut(s)	1244
GluI	GCNGC	5 cut(s)	275, 597, 693, 840, 1299
GsaI	CCCAGC	1 cut(s)	604
GsuI	CTGGAG	3 cut(s)	191, 574, 883
HaeIII	GGCC	2 cut(s)	221, 1179
HapII	CCGG	1 cut(s)	308
HgaI	GACGC	1 cut(s)	632
HhaI	GCGC	1 cut(s)	1245
Hin6I	GCGC	1 cut(s)	1243
HinP1I	GCGC	1 cut(s)	1243
HincII	GTYRAC	3 cut(s)	50, 927, 1234
HindII	GTYRAC	3 cut(s)	50, 927, 1234
HinfI	GANTC	4 cut(s)	122, 404, 1189, 1395
HpaI	GTTAAC	1 cut(s)	1234
HpaII	CCGG	1 cut(s)	308
Hpy166II	GTNNAC	4 cut(s)	50, 927, 1212, 1234
Hpy188I	TCNGA	6 cut(s)	43, 403, 622, 1186, 1194, 1240
Hpy188III	TCNNGA	8 cut(s)	170, 353, 591, 631, 974, 1051, 1131, 1392
Hpy8I	GTNNAC	4 cut(s)	50, 927, 1212, 1234
Hpy99I	CGWCG	1 cut(s)	874
HpyAV	CCTTC	3 cut(s)	211, 930, 1165
HpyCH4III	ACNGT	5 cut(s)	47, 391, 424, 467, 910
HpyCH4IV	ACGT	2 cut(s)	63, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 1331
HpyF3I	CTNAG	4 cut(s)	444, 681, 1185, 1239
HpySE526I	ACGT	2 cut(s)	63, 374
HspAI	GCGC	1 cut(s)	1243
KpnI	GGTACC	1 cut(s)	420
KspAI	GTTAAC	1 cut(s)	1234
Kzo9I	GATC	4 cut(s)	85, 298, 970, 1043
LmnI	GCTCC	4 cut(s)	175, 593, 902, 1113
Lsp1109I	GCAGC	5 cut(s)	286, 583, 679, 826, 1285
LweI	GCATC	4 cut(s)	541, 628, 730, 1152
MaeI	CTAG	5 cut(s)	543, 582, 816, 957, 1131
MaeII	ACGT	2 cut(s)	63, 374
MaeIII	GTNAC	2 cut(s)	577, 1014
MalI	GATC	4 cut(s)	87, 300, 972, 1045
MbiI	CCGCTC	1 cut(s)	1226
MboI	GATC	4 cut(s)	85, 298, 970, 1043
MboII	GAAGA	7 cut(s)	120, 242, 328, 800, 803, 1102, 1320
MlsI	TGGCCA	1 cut(s)	1179
MluNI	TGGCCA	1 cut(s)	1179
MmeI	TCCRAC	1 cut(s)	699
MnlI	CCTC	8 cut(s)	166, 245, 675, 711, 1270, 1279, 1336, 1409
Mox20I	TGGCCA	1 cut(s)	1179
MscI	TGGCCA	1 cut(s)	1179
MseI	TTAA	6 cut(s)	258, 321, 674, 687, 747, 1233
MslI	CAYNNNNRTG	2 cut(s)	130, 1353
Msp20I	TGGCCA	1 cut(s)	1179
MspCI	CTTAAG	1 cut(s)	257
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	59, 308
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	874
MwoI	GCNNNNNNNGC	2 cut(s)	503, 1331
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	4 cut(s)	85, 298, 970, 1043
NlaIV	GGNNCC	2 cut(s)	418, 945
NmuCI	GTSAC	1 cut(s)	577
NspI	RCATGY	1 cut(s)	1409
NspV	TTCGAA	2 cut(s)	228, 857
PagI	TCATGA	1 cut(s)	352
PceI	AGGCCT	1 cut(s)	221
PfeI	GAWTC	4 cut(s)	122, 404, 1189, 1395
PflFI	GACNNNGTC	1 cut(s)	626
PkrI	GCNGC	5 cut(s)	276, 598, 694, 841, 1300
Psp6I	CCWGG	1 cut(s)	57
PspEI	GGTNACC	1 cut(s)	1014
PspFI	CCCAGC	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	418, 945
PstI	CTGCAG	1 cut(s)	728
PsyI	GACNNNGTC	1 cut(s)	626
RsaI	GTAC	2 cut(s)	188, 418
RsaNI	GTAC	2 cut(s)	187, 417
RseI	CAYNNNNRTG	2 cut(s)	130, 1353
SaqAI	TTAA	6 cut(s)	258, 321, 674, 687, 747, 1233
SatI	GCNGC	5 cut(s)	275, 597, 693, 840, 1299
Sau3AI	GATC	4 cut(s)	85, 298, 970, 1043
ScrFI	CCNGG	2 cut(s)	59, 308
SfaNI	GCATC	4 cut(s)	541, 628, 730, 1152
SfcI	CTRYAG	4 cut(s)	117, 724, 1101, 1140
SfuI	TTCGAA	2 cut(s)	228, 857
SmiMI	CAYNNNNRTG	2 cut(s)	130, 1353
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SpeI	ACTAGT	1 cut(s)	581
SseBI	AGGCCT	1 cut(s)	221
SsiI	CCGC	3 cut(s)	378, 1224, 1323
SspMI	CTAG	5 cut(s)	543, 582, 816, 957, 1131
StuI	AGGCCT	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	57, 306
TaaI	ACNGT	5 cut(s)	47, 391, 424, 467, 910
TaiI	ACGT	2 cut(s)	66, 377
TaqI	TCGA	4 cut(s)	95, 228, 703, 857
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	4 cut(s)	122, 404, 1189, 1395
Tru1I	TTAA	6 cut(s)	258, 321, 674, 687, 747, 1233
Tru9I	TTAA	6 cut(s)	258, 321, 674, 687, 747, 1233
TscAI	CASTG	7 cut(s)	19, 132, 429, 783, 907, 913, 1348
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	5 cut(s)	274, 596, 692, 839, 1298
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	5 cut(s)	11, 516, 1008, 1080, 1337
TspGWI	ACGGA	3 cut(s)	494, 1126, 1183
TspRI	CASTG	7 cut(s)	19, 132, 429, 783, 907, 913, 1348
Tth111I	GACNNNGTC	1 cut(s)	626
Vha464I	CTTAAG	1 cut(s)	257
XapI	RAATTY	3 cut(s)	17, 78, 985
XbaI	TCTAGA	1 cut(s)	1130
XceI	RCATGY	1 cut(s)	1409
XspI	CTAG	5 cut(s)	543, 582, 816, 957, 1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.