Rorug07G0268700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0007515
Physical Location & Seq
Reverse (-)
25357543 .. 25361424
3882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0268700.1

Sequence Viewer

Length: 891 bp
ATGGAAGTTCAGCATCTGCTTTCTGGGTTTTGCTCAACCCCAATGGTGCAAAACCCCAAGGCCCAATTCTTTGCAAGATTGTCCTCTTCTTCTACATATTTTTCTCAATCCCACAAATGGGTCTCCTTCAAGGCCTGCCCTTGTAATTCACAGAGGGCATTGTCTAGGATAGAGTGTAGGAGCACAGAGAGAGCTGGGGTCATTGCTTCTTCTGATAGTGAAGATTTGGGGAATGGGATTAGGCCGAAAAAGCTTGCGGTTTTTGTGTCTGGTGGAGGCTCCAATTTTCGGTCCATTCATGAAGCCTGCATTCGGGGTTCAATTCATGGAGACATTGTTGTTTTAGTTACTAATAAACAAGGTTGTGGAGGTGCTGACTATGCAAGAGATAAGGGCCTCCCAGTTGTGCTGTTTCCCAAAACAAAAAAAGAGCCTGATGGAATATCTCCAATTGACCTCGTTGCTGTCCTTAGGGGACTTGAGGTTGACTTTGTTCTTCTGGCTGGTTACCTACAACTTATACCGGTAGAGTTGATACAAGCTTATCCCAGATCCATAGTGAACATCCATCCATCACTTCTTCCTGCATTTGGAGGCAAAGGTAACTATGGAATGAGGGTTCACAAAGCAGTCATTGCTTCTGGAGCAAGATACACAGGCCCTACAATACATTTTGTTGATGAGCATTATGACACTGGACGTATCCTTGCTCAAAGAGTTGTCCCAGTGCGTGCTAATGACACTGCTGAGGAGCTGGCTGCAAGGGTCCTTAGGGAGGAGCATCGCTTATATGTGGAGGTCATAACAGCATTATGTGAAGAGCGAATATCTTGGAGGGAAGATGGTGTTCCTATAATCCGCAGCAAAGAAAATCCCAATGAATACAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

296

Amino Acids

32.55

Weight (kDa)

8.64

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Formyl_trans_N PF00551 83 - 268 3e-54 Formyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 257, 859
AclWI GGATC 1 cut(s) 546
AfiI CCNNNNNNNGG 6 cut(s) 117, 118, 288, 312, 590, 775
AgeI ACCGGT 1 cut(s) 523
AgsI TTSAA 2 cut(s) 130, 321
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AloI GAACNNNNNNTCC 2 cut(s) 603, 635
AluBI AGCT 5 cut(s) 194, 253, 542, 754, 888
AluI AGCT 5 cut(s) 194, 253, 542, 754, 888
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 2 cut(s) 127, 324
AlwI GGATC 1 cut(s) 546
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 5 cut(s) 60, 132, 242, 394, 658
ApeKI GCWGC 2 cut(s) 758, 861
AsiGI ACCGGT 1 cut(s) 523
AspS9I GGNCC 5 cut(s) 61, 291, 394, 659, 766
AvaII GGWCC 2 cut(s) 291, 766
AxyI CCTNAGG 2 cut(s) 470, 770
Bbv12I GWGCWC 1 cut(s) 185
BbvCI CCTCAGC 1 cut(s) 747
BbvI GCAGC 2 cut(s) 745, 873
BccI CCATC 4 cut(s) 431, 576, 580, 836
BciVI GTATCC 1 cut(s) 713
BcoDI GTCTC 2 cut(s) 127, 324
BfaI CTAG 1 cut(s) 165
BfuI GTATCC 1 cut(s) 713
BisI GCNGC 2 cut(s) 759, 862
BlsI GCNGC 2 cut(s) 760, 863
Bme18I GGWCC 2 cut(s) 291, 766
BmgT120I GGNCC 5 cut(s) 61, 291, 394, 659, 766
BmiI GGNNCC 2 cut(s) 280, 767
BmrI ACTGGG 2 cut(s) 395, 719
BmsI GCATC 2 cut(s) 22, 790
BmuI ACTGGG 2 cut(s) 395, 719
BpmI CTGGAG 1 cut(s) 663
Bpu10I CCTNAGC 1 cut(s) 747
BpuEI CTTGAG 1 cut(s) 500
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 523
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 6 cut(s) 117, 118, 288, 312, 590, 775
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 3 cut(s) 401, 700, 725
Bse21I CCTNAGG 2 cut(s) 470, 770
Bse3DI GCAATG 2 cut(s) 201, 633
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 564, 568
BseLI CCNNNNNNNGG 6 cut(s) 117, 118, 288, 312, 590, 775
BseMI GCAATG 2 cut(s) 201, 633
BseMII CTCAG 1 cut(s) 738
BseNI ACTGG 3 cut(s) 401, 700, 725
BseRI GAGGAG 2 cut(s) 764, 791
BseXI GCAGC 2 cut(s) 745, 873
BseYI CCCAGC 1 cut(s) 194
BshFI GGCC 5 cut(s) 62, 134, 244, 396, 660
BshTI ACCGGT 1 cut(s) 523
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 524
BslFI GGGAC 2 cut(s) 489, 707
BslI CCNNNNNNNGG 6 cut(s) 117, 118, 288, 312, 590, 775
BsmAI GTCTC 2 cut(s) 127, 324
BsmFI GGGAC 2 cut(s) 489, 707
BsmI GAATGC 1 cut(s) 309
BsnI GGCC 5 cut(s) 62, 134, 244, 396, 660
Bso31I GGTCTC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 551
BspACI CCGC 2 cut(s) 257, 859
BspANI GGCC 5 cut(s) 62, 134, 244, 396, 660
BspCNI CTCAG 1 cut(s) 739
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 2 cut(s) 280, 767
BspPI GGATC 1 cut(s) 546
BspQI GCTCTTC 1 cut(s) 813
BspTNI GGTCTC 1 cut(s) 127
BsrDI GCAATG 2 cut(s) 201, 633
BsrFI RCCGGY 1 cut(s) 523
BsrI ACTGG 3 cut(s) 401, 700, 725
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 1 cut(s) 551
BssT1I CCWWGG 1 cut(s) 57
Bst6I CTCTTC 2 cut(s) 91, 813
BstAPI GCANNNNNTGC 1 cut(s) 635
BstC8I GCNNGC 5 cut(s) 136, 255, 307, 732, 756
BstDEI CTNAG 3 cut(s) 470, 747, 770
BstEII GGTNACC 1 cut(s) 506
BstENI CCTNNNNNAGG 1 cut(s) 773
BstF5I GGATG 2 cut(s) 564, 568
BstKTI GATC 1 cut(s) 554
BstMAI GTCTC 2 cut(s) 127, 324
BstMBI GATC 1 cut(s) 551
BstMWI GCNNNNNNNGC 4 cut(s) 250, 380, 635, 644
BstPI GGTNACC 1 cut(s) 506
BstV1I GCAGC 2 cut(s) 745, 873
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
Bsu36I CCTNAGG 2 cut(s) 470, 770
BsuI GTATCC 1 cut(s) 713
BsuRI GGCC 5 cut(s) 62, 134, 244, 396, 660
BtgZI GCGATG 1 cut(s) 767
BtsCI GGATG 2 cut(s) 564, 568
BtsI GCAGTG 1 cut(s) 741
BtsIMutI CAGTG 3 cut(s) 693, 732, 741
Cac8I GCNNGC 5 cut(s) 136, 255, 307, 732, 756
CaiI CAGNNNCTG 1 cut(s) 16
CciI TCATGA 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 5 cut(s) 61, 291, 394, 659, 766
CspAI ACCGGT 1 cut(s) 523
CviAII CATG 2 cut(s) 299, 326
DdeI CTNAG 3 cut(s) 470, 747, 770
DpnI GATC 1 cut(s) 553
DpnII GATC 1 cut(s) 551
Eam1104I CTCTTC 2 cut(s) 91, 813
EarI CTCTTC 2 cut(s) 91, 813
Eco130I CCWWGG 1 cut(s) 57
Eco147I AGGCCT 1 cut(s) 134
Eco31I GGTCTC 1 cut(s) 127
Eco47I GGWCC 2 cut(s) 291, 766
Eco81I CCTNAGG 2 cut(s) 470, 770
Eco91I GGTNACC 1 cut(s) 506
EcoNI CCTNNNNNAGG 1 cut(s) 773
EcoO109I RGGNCCY 3 cut(s) 394, 659, 766
EcoO65I GGTNACC 1 cut(s) 506
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 2 cut(s) 302, 329
FaqI GGGAC 2 cut(s) 489, 707
FatI CATG 2 cut(s) 298, 325
Fnu4HI GCNGC 2 cut(s) 759, 862
FokI GGATG 2 cut(s) 551, 555
Fsp4HI GCNGC 2 cut(s) 759, 862
FspBI CTAG 1 cut(s) 165
GluI GCNGC 2 cut(s) 759, 862
GsaI CCCAGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 663
HaeIII GGCC 5 cut(s) 62, 134, 244, 396, 660
HapII CCGG 1 cut(s) 524
Hin1II CATG 2 cut(s) 302, 329
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 2 cut(s) 251, 540
HpaII CCGG 1 cut(s) 524
Hpy166II GTNNAC 3 cut(s) 487, 562, 622
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 299, 642
Hpy8I GTNNAC 3 cut(s) 487, 562, 622
HpyAV CCTTC 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 700
HpyCH4V TGCA 6 cut(s) 49, 74, 309, 383, 587, 761
HpyF10VI GCNNNNNNNGC 4 cut(s) 250, 380, 635, 644
HpyF3I CTNAG 3 cut(s) 470, 747, 770
HpySE526I ACGT 1 cut(s) 700
Hsp92II CATG 2 cut(s) 302, 329
Kzo9I GATC 1 cut(s) 551
LguI GCTCTTC 1 cut(s) 813
LmnI GCTCC 5 cut(s) 180, 284, 644, 751, 778
Lsp1109I GCAGC 2 cut(s) 745, 873
LweI GCATC 2 cut(s) 22, 790
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 700
MaeIII GTNAC 3 cut(s) 346, 506, 602
MalI GATC 1 cut(s) 553
MboI GATC 1 cut(s) 551
MboII GAAGA 8 cut(s) 78, 81, 201, 233, 488, 572, 830, 851
MfeI CAATTG 1 cut(s) 450
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 5 cut(s) 65, 145, 283, 321, 450
MspI CCGG 1 cut(s) 524
MunI CAATTG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 309
MwoI GCNNNNNNNGC 4 cut(s) 250, 380, 635, 644
NdeII GATC 1 cut(s) 551
NlaIII CATG 2 cut(s) 302, 329
NlaIV GGNNCC 2 cut(s) 280, 767
PagI TCATGA 1 cut(s) 298
PceI AGGCCT 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 813
PctI GAATGC 1 cut(s) 309
PinAI ACCGGT 1 cut(s) 523
PkrI GCNGC 2 cut(s) 760, 863
PpuMI RGGWCCY 1 cut(s) 766
Psp5II RGGWCCY 1 cut(s) 766
PspEI GGTNACC 1 cut(s) 506
PspFI CCCAGC 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 280, 767
PspPI GGNCC 5 cut(s) 61, 291, 394, 659, 766
PspPPI RGGWCCY 1 cut(s) 766
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 551
SapI GCTCTTC 1 cut(s) 813
SatI GCNGC 2 cut(s) 759, 862
Sau3AI GATC 1 cut(s) 551
Sau96I GGNCC 5 cut(s) 61, 291, 394, 659, 766
SduI GDGCHC 1 cut(s) 185
SfaNI GCATC 2 cut(s) 22, 790
SinI GGWCC 2 cut(s) 291, 766
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 5 cut(s) 65, 145, 283, 321, 450
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 2 cut(s) 257, 859
SspMI CTAG 1 cut(s) 165
StuI AGGCCT 1 cut(s) 134
StyI CCWWGG 1 cut(s) 57
TaiI ACGT 1 cut(s) 703
TaqII GACCGA 1 cut(s) 279
TasI AATT 5 cut(s) 65, 145, 283, 321, 450
TscAI CASTG 3 cut(s) 700, 732, 748
TseI GCWGC 2 cut(s) 758, 861
TspDTI ATGAA 3 cut(s) 287, 314, 315
TspRI CASTG 3 cut(s) 700, 732, 748
VpaK11BI GGWCC 2 cut(s) 291, 766
XagI CCTNNNNNAGG 1 cut(s) 773
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.