Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007515

Physical Location & Seq

Genomic Coordinates Reverse (-)

34373244 .. 34373937

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATGTCGTCAACCTCGGGGAGGAGGTTGTTGATAATTGGAGTGTTTGGAAATGGCGACTTATACCGAGATAGGTCAACACTCTCGGGATATATCAAGCTCGTTATTTTGGATCATGGTTCGATACCCTTTGGAAGATTTGCTGCTGAGACGCTTGCTTGGGAAAAATGGTCTGTTTTTCGGAAAAATCGATGTCGGGAGGAGCTCGAAATGTACAAGTCGAATGGATTGGTAGCCCAAAAGAGGGCTTACTTTGAGGAGTATTATAAGAGAGTTAGAGCTCTCAAGGCATTGCAATCCGAGCATCAAGAAACAGCCCAAGTTGATGCTTGCCCACATGTGCGGATGAATTCCATGCAATTAGAAAATGACAATTCTAGTAATGATATTTGTGTGCCTTTACTTGAAAAAGGAGCTGCAGTTTACGATTCGAGCTGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.91

Weight (kDa)

8.44

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33320 FvH4_5g33320 FvH4_5g33320 FvH4_5g33320 FvH4_5g33320 FvH4_5g33320
malus_domestica	MD15G1395700.v1.1
prunus_persica	Prupe.1G544900_v2.0.a1 Prupe.1G544900_v2.0.a1 Prupe.1G544900_v2.0.a1
pyrus_communis	pycom15g35630
rosa_chinensis	RchiOBHm_Chr7g0232051
rosa_laevigata	RLG00000001397
rosa_multiflora	Rmu_sc0004618.1_g000018 Rmu_sc0009837.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228860 Rroxscaffold_3G00242020 Rroxscaffold_4G00331070
rosa_rugosa	Rorug07G0268700
rosa_samantha	Rh7AG423100 Rh7BG397300 Rh7CG443500 Rh7DG415400
rosa_wichuraiana	Rw0G010280 Rw7G035000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AciI	CCGC	1 cut(s)	343
AclWI	GGATC	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	349
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	3 cut(s)	21, 243, 244
AflIII	ACRYGT	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	407
AluBI	AGCT	5 cut(s)	100, 205, 281, 416, 435
AluI	AGCT	5 cut(s)	100, 205, 281, 416, 435
Alw21I	GWGCWC	2 cut(s)	207, 283
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	120
Ama87I	CYCGRG	2 cut(s)	16, 85
ApeKI	GCWGC	2 cut(s)	143, 416
ApoI	RAATTY	1 cut(s)	349
AvaI	CYCGRG	2 cut(s)	16, 85
BanII	GRGCYC	2 cut(s)	207, 283
Bbv12I	GWGCWC	2 cut(s)	207, 283
BbvI	GCAGC	2 cut(s)	130, 403
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	417
BisI	GCNGC	2 cut(s)	144, 417
BlsI	GCNGC	2 cut(s)	145, 418
BmeT110I	CYCGRG	2 cut(s)	16, 85
BmsI	GCATC	2 cut(s)	313, 316
BpuEI	CTTGAG	1 cut(s)	269
Bsa29I	ATCGAT	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 243, 244
Bse3DI	GCAATG	1 cut(s)	290
BseCI	ATCGAT	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	3 cut(s)	21, 243, 244
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	138
BseRI	GAGGAG	3 cut(s)	37, 215, 272
BseXI	GCAGC	2 cut(s)	130, 403
BshVI	ATCGAT	1 cut(s)	190
BsiHKAI	GWGCWC	2 cut(s)	207, 283
BsiHKCI	CYCGRG	2 cut(s)	16, 85
BslI	CCNNNNNNNGG	3 cut(s)	21, 243, 244
BsmAI	GTCTC	1 cut(s)	143
BsmBI	CGTCTC	1 cut(s)	143
BsoBI	CYCGRG	2 cut(s)	16, 85
Bsp1286I	GDGCHC	2 cut(s)	207, 283
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	343
BspCNI	CTCAG	1 cut(s)	139
BspDI	ATCGAT	1 cut(s)	190
BspMAI	CTGCAG	1 cut(s)	421
BspPI	GGATC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	1 cut(s)	112
BstAUI	TGTACA	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	156, 331
BstDEI	CTNAG	1 cut(s)	147
BstENI	CCTNNNNNAGG	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	351
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 301
BstNSI	RCATGY	1 cut(s)	341
BstSFI	CTRYAG	1 cut(s)	417
BstV1I	GCAGC	2 cut(s)	130, 403
Bsu15I	ATCGAT	1 cut(s)	190
BsuTUI	ATCGAT	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	156, 331
ClaI	ATCGAT	1 cut(s)	190
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	3 cut(s)	116, 338, 355
CviJI	RGCY	8 cut(s)	100, 205, 236, 248, 281, 317, 416, 435
CviKI_1	RGCY	8 cut(s)	100, 205, 236, 248, 281, 317, 416, 435
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Ecl136II	GAGCTC	2 cut(s)	205, 281
Eco24I	GRGCYC	2 cut(s)	207, 283
Eco53kI	GAGCTC	2 cut(s)	205, 281
Eco88I	CYCGRG	2 cut(s)	16, 85
EcoICRI	GAGCTC	2 cut(s)	205, 281
EcoNI	CCTNNNNNAGG	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	349
EcoT38I	GRGCYC	2 cut(s)	207, 283
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	3 cut(s)	119, 341, 358
FaiI	YATR	6 cut(s)	64, 93, 117, 267, 339, 356
FatI	CATG	3 cut(s)	115, 337, 354
Fnu4HI	GCNGC	2 cut(s)	144, 417
FokI	GGATG	1 cut(s)	358
FriOI	GRGCYC	2 cut(s)	207, 283
Fsp4HI	GCNGC	2 cut(s)	144, 417
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	2 cut(s)	144, 417
HgaI	GACGC	1 cut(s)	160
Hin1II	CATG	3 cut(s)	119, 341, 358
HincII	GTYRAC	2 cut(s)	12, 78
HindII	GTYRAC	2 cut(s)	12, 78
HinfI	GANTC	1 cut(s)	428
Hpy166II	GTNNAC	3 cut(s)	12, 78, 424
Hpy188I	TCNGA	2 cut(s)	183, 301
Hpy188III	TCNNGA	3 cut(s)	87, 197, 308
Hpy8I	GTNNAC	3 cut(s)	12, 78, 424
HpyCH4V	TGCA	3 cut(s)	295, 358, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 301
HpyF3I	CTNAG	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	119, 341, 358
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	2 cut(s)	202, 413
LpnPI	CCDG	1 cut(s)	421
Lsp1109I	GCAGC	2 cut(s)	130, 403
LweI	GCATC	2 cut(s)	313, 316
MaeI	CTAG	1 cut(s)	378
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	1 cut(s)	147
MhlI	GDGCHC	2 cut(s)	207, 283
MluCI	AATT	4 cut(s)	36, 349, 359, 373
MnlI	CCTC	6 cut(s)	15, 18, 25, 193, 237, 250
MwoI	GCNNNNNNNGC	2 cut(s)	287, 301
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	3 cut(s)	119, 341, 358
NspI	RCATGY	1 cut(s)	341
PciI	ACATGT	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	2 cut(s)	145, 418
PscI	ACATGT	1 cut(s)	337
PsiI	TTATAA	1 cut(s)	267
Psp124BI	GAGCTC	2 cut(s)	207, 283
PstI	CTGCAG	1 cut(s)	421
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SacI	GAGCTC	2 cut(s)	207, 283
SatI	GCNGC	2 cut(s)	144, 417
Sau3AI	GATC	1 cut(s)	112
SduI	GDGCHC	2 cut(s)	207, 283
SetI	ASST	8 cut(s)	17, 29, 77, 102, 207, 283, 418, 437
SfaNI	GCATC	2 cut(s)	313, 316
SfcI	CTRYAG	1 cut(s)	417
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	4 cut(s)	36, 349, 359, 373
SsiI	CCGC	1 cut(s)	343
SspMI	CTAG	1 cut(s)	378
SstI	GAGCTC	2 cut(s)	207, 283
TaqI	TCGA	5 cut(s)	122, 190, 207, 221, 431
TasI	AATT	4 cut(s)	36, 349, 359, 373
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	428
TseI	GCWGC	2 cut(s)	143, 416
TspDTI	ATGAA	1 cut(s)	362
XagI	CCTNNNNNAGG	1 cut(s)	19
XapI	RAATTY	1 cut(s)	349
XceI	RCATGY	1 cut(s)	341
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.