Rw7G035000

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
52124837 .. 52130302
5466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G035000.1

Sequence Viewer

Length: 1449 bp
ATGGCGACTTATACTGAGATAGGTCAACACTCTCAGGATATATCTAGCTCTGCTATTCTGGATCATGGTTCGATATCCTTTGGAAGATTTGCTGCTGAGTCGCTTGCTTGGGAGAAATGGTCTGTTTTTCGGCAAAATCGATGTCAGGAGGAGCTCGAAATGTACAAGTCGAATGGATTAGTAGCCCAAAAGAAGGCTTACTTTGAGGAGTATTATAAGAGAGTTAGAGCTCTCAAGGCATTGCAATCCGAGCATCAAGAAACAGCCCAAGTTGATGCTTGCCCACATGTGCGGATGAATTCCATGCAATTAGAAAATGACAATTCTAGTAATGATATGTCGAAACAGGAAAAGTCAGCACCTGATGCAGTTACTAACTCGGATTCTTCTGTGGGAAGTACAGTGGGTGAAGCAGGACAAGCTAACAAAGAGTCATTGAATGATTGCAATGGCTATAGTGATAGTTTTACCGTCACAGATGAAGCCGGTAATACTTTATCTAATATCGACCGAGAGCAATCTTCACATGAGCAATCTTCACATCAGGCTTCTGTATCAGCCACTCCACCGGTCGCTGGAAGCTCTGTCGACAGAGAGCAATCTTCACATCAGGCTTCCGTATCAGCTACTCCACCGGTCGCTGGAAGCTCTGGGGTTGCCAAGCATGGCAGCCTTGTCTCTGACCCTGTCAAGCTGACTGCTAATGAGCAAAAAAAACTTGCCCCTGTTTTAAAGGCTAAGGTATTATCTTTCAAAGTCAAAACCACTTCCACTCAATCAAATAATGGCAAAAGGGATAACATTCTTCTTCCTAGCAAAAGCAACACTCGTATGGCTGCAAGTGGTAAAGATTCCAGCCAAGTGTCCTCACGTAAAAAACTTACTGAAGTACGCTCCAGTGTTGCTGTCCTACATCCTTCCTCAACAAGAATCAGAATGGTTCCATCATCTCCTTGTGGTAGAAGTGATCAAAGAAACGCAAATACGAATGGCAAAGATTTGGCGGAGAGCTTACGAACAAGTCGACCCGTTCATTCACAAGTTGTTCAGAATCCTTCAAGAGAGAAGCCAATTACCAGTGGTTTGAAGGACAAGGCTCTAGAGAAACGGACCTGTCCTGGAGTTTCTAAAAAGCCTTCCGAGTTCAGCAGTCAACAGATGCGACCAAAAGTTTGCCAATCTGAGAACCAGATACCAAATTCCATGTCGACCAATATTGCCCGAAATAGATTGATCCGAGATACTGAAGCTGACTGTGGGAGCAAGAATTATGGAAAAGAAAGAAATGAGAAAGAGGGAGGAGAGGGAATTAACAGTACATGTAGAAAAGATCCAAAGTCCTCCTATAATCCAGCGTCAAGTATTCAGAAAAATTTGAAGCTGGTGCATAAGACTGCAGAACCACGGTCCGGAGGCCTGAAGCATACTTCGAAGGGAACCAAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

482

Amino Acids

52.32

Weight (kDa)

9.37

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AccI GTMKAC 3 cut(s) 588, 1024, 1208
AccIII TCCGGA 1 cut(s) 1409
AciI CCGC 2 cut(s) 292, 1004
AclWI GGATC 3 cut(s) 69, 1228, 1325
AcsI RAATTY 3 cut(s) 298, 1198, 1372
AcuI CTGAAG 3 cut(s) 906, 1266, 1439
AfaI GTAC 4 cut(s) 164, 400, 891, 1318
AfiI CCNNNNNNNGG 4 cut(s) 193, 575, 641, 1409
AflIII ACRYGT 2 cut(s) 286, 1319
AgeI ACCGGT 2 cut(s) 568, 634
AgsI TTSAA 5 cut(s) 439, 754, 1059, 1087, 1378
AjnI CCWGG 1 cut(s) 1117
Alw21I GWGCWC 2 cut(s) 156, 232
Alw26I GTCTC 1 cut(s) 682
AlwI GGATC 3 cut(s) 69, 1228, 1325
AlwNI CAGNNNCTG 1 cut(s) 362
Aor13HI TCCGGA 1 cut(s) 1409
AoxI GGCC 1 cut(s) 1414
ApeKI GCWGC 3 cut(s) 92, 669, 836
ApoI RAATTY 3 cut(s) 298, 1198, 1372
ArsI GACNNNNNNTTYG 6 cut(s) 127, 159, 1155, 1187, 1190, 1222
AsiGI ACCGGT 2 cut(s) 568, 634
AspS9I GGNCC 2 cut(s) 1110, 1407
AsuHPI GGTGA 1 cut(s) 419
AsuII TTCGAA 1 cut(s) 1430
AvaII GGWCC 2 cut(s) 1110, 1407
BanII GRGCYC 2 cut(s) 156, 232
Bbv12I GWGCWC 2 cut(s) 156, 232
BbvI GCAGC 3 cut(s) 79, 681, 823
BccI CCATC 1 cut(s) 952
BciT130I CCWGG 1 cut(s) 1119
BclI TGATCA 1 cut(s) 967
BcoDI GTCTC 1 cut(s) 682
BfaI CTAG 4 cut(s) 45, 327, 813, 1100
BfmI CTRYAG 2 cut(s) 454, 1395
BisI GCNGC 3 cut(s) 93, 670, 837
BlsI GCNGC 3 cut(s) 94, 671, 838
Bme1390I CCNGG 1 cut(s) 1119
Bme18I GGWCC 2 cut(s) 1110, 1407
BmgT120I GGNCC 2 cut(s) 1110, 1407
BmiI GGNNCC 2 cut(s) 942, 1438
BmrFI CCNGG 1 cut(s) 1119
BmsI GCATC 4 cut(s) 262, 265, 355, 1149
BpmI CTGGAG 2 cut(s) 880, 1140
Bpu10I CCTNAGC 1 cut(s) 738
Bpu14I TTCGAA 1 cut(s) 1430
BpuEI CTTGAG 1 cut(s) 218
Bsa29I ATCGAT 1 cut(s) 139
BsaAI YACGTR 1 cut(s) 872
BsaJI CCNNGG 2 cut(s) 1403, 1440
BsaWI WCCGGW 3 cut(s) 568, 634, 1409
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 575, 641, 1409
Bse118I RCCGGY 3 cut(s) 485, 568, 634
Bse1I ACTGG 2 cut(s) 897, 1077
Bse3DI GCAATG 2 cut(s) 239, 454
BseAI TCCGGA 1 cut(s) 1409
BseBI CCWGG 1 cut(s) 1119
BseCI ATCGAT 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 1403, 1440
BseGI GGATG 2 cut(s) 300, 913
BseLI CCNNNNNNNGG 4 cut(s) 193, 575, 641, 1409
BseMI GCAATG 2 cut(s) 239, 454
BseMII CTCAG 4 cut(s) 6, 47, 87, 1173
BseNI ACTGG 2 cut(s) 897, 1077
BseRI GAGGAG 3 cut(s) 164, 221, 1314
BseXI GCAGC 3 cut(s) 79, 681, 823
Bsh1285I CGRYCG 3 cut(s) 511, 573, 639
BshFI GGCC 1 cut(s) 1416
BshTI ACCGGT 2 cut(s) 568, 634
BshVI ATCGAT 1 cut(s) 139
BsiEI CGRYCG 3 cut(s) 511, 573, 639
BsiHKAI GWGCWC 2 cut(s) 156, 232
BsiSI CCGG 4 cut(s) 486, 569, 635, 1410
BslI CCNNNNNNNGG 4 cut(s) 193, 575, 641, 1409
BsmAI GTCTC 1 cut(s) 682
BsnI GGCC 1 cut(s) 1416
Bsp119I TTCGAA 1 cut(s) 1430
Bsp1286I GDGCHC 2 cut(s) 156, 232
Bsp13I TCCGGA 1 cut(s) 1409
Bsp1407I TGTACA 1 cut(s) 162
Bsp143I GATC 4 cut(s) 61, 967, 1233, 1330
BspACI CCGC 2 cut(s) 292, 1004
BspANI GGCC 1 cut(s) 1416
BspCNI CTCAG 4 cut(s) 7, 46, 88, 1174
BspDI ATCGAT 1 cut(s) 139
BspEI TCCGGA 1 cut(s) 1409
BspLI GGNNCC 2 cut(s) 942, 1438
BspMAI CTGCAG 1 cut(s) 1399
BspPI GGATC 3 cut(s) 69, 1228, 1325
BspT104I TTCGAA 1 cut(s) 1430
BsrDI GCAATG 2 cut(s) 239, 454
BsrFI RCCGGY 3 cut(s) 485, 568, 634
BsrGI TGTACA 1 cut(s) 162
BsrI ACTGG 2 cut(s) 897, 1077
BssAI RCCGGY 3 cut(s) 485, 568, 634
BssECI CCNNGG 2 cut(s) 1403, 1440
BssMI GATC 4 cut(s) 61, 967, 1233, 1330
BssT1I CCWWGG 1 cut(s) 1440
Bst2UI CCWGG 1 cut(s) 1119
Bst4CI ACNGT 5 cut(s) 403, 472, 1256, 1316, 1407
BstAPI GCANNNNNTGC 1 cut(s) 365
BstAUI TGTACA 1 cut(s) 162
BstBAI YACGTR 1 cut(s) 872
BstBI TTCGAA 1 cut(s) 1430
BstC8I GCNNGC 2 cut(s) 105, 280
BstDEI CTNAG 5 cut(s) 15, 33, 96, 738, 1182
BstDSI CCRYGG 1 cut(s) 1403
BstF5I GGATG 2 cut(s) 300, 913
BstKTI GATC 4 cut(s) 64, 970, 1236, 1333
BstMAI GTCTC 1 cut(s) 682
BstMBI GATC 4 cut(s) 61, 967, 1233, 1330
BstMCI CGRYCG 3 cut(s) 511, 573, 639
BstMWI GCNNNNNNNGC 4 cut(s) 236, 250, 365, 419
BstNI CCWGG 1 cut(s) 1119
BstNSI RCATGY 2 cut(s) 290, 1323
BstSCI CCNGG 1 cut(s) 1117
BstSFI CTRYAG 2 cut(s) 454, 1395
BstV1I GCAGC 3 cut(s) 79, 681, 823
BstX2I RGATCY 1 cut(s) 1330
BstYI RGATCY 1 cut(s) 1330
Bsu15I ATCGAT 1 cut(s) 139
BsuRI GGCC 1 cut(s) 1416
BsuTUI ATCGAT 1 cut(s) 139
BtgI CCRYGG 1 cut(s) 1403
BtsCI GGATG 2 cut(s) 300, 913
BtsIMutI CAGTG 3 cut(s) 408, 904, 1084
Cac8I GCNNGC 2 cut(s) 105, 280
CaiI CAGNNNCTG 1 cut(s) 362
Cfr10I RCCGGY 3 cut(s) 485, 568, 634
Cfr13I GGNCC 2 cut(s) 1110, 1407
ClaI ATCGAT 1 cut(s) 139
CpoI CGGWCCG 1 cut(s) 1407
CseI GACGC 1 cut(s) 1344
Csp6I GTAC 4 cut(s) 163, 399, 890, 1317
CspAI ACCGGT 2 cut(s) 568, 634
CspI CGGWCCG 1 cut(s) 1407
CviAII CATG 7 cut(s) 65, 287, 304, 527, 665, 1204, 1320
CviQI GTAC 4 cut(s) 163, 399, 890, 1317
DdeI CTNAG 5 cut(s) 15, 33, 96, 738, 1182
DpnI GATC 4 cut(s) 63, 969, 1235, 1332
DpnII GATC 4 cut(s) 61, 967, 1233, 1330
DraI TTTAAA 1 cut(s) 732
EciI GGCGGA 1 cut(s) 1019
Ecl136II GAGCTC 2 cut(s) 154, 230
Eco130I CCWWGG 1 cut(s) 1440
Eco147I AGGCCT 1 cut(s) 1416
Eco24I GRGCYC 2 cut(s) 156, 232
Eco32I GATATC 1 cut(s) 75
Eco47I GGWCC 2 cut(s) 1110, 1407
Eco53kI GAGCTC 2 cut(s) 154, 230
Eco57I CTGAAG 3 cut(s) 906, 1266, 1439
EcoICRI GAGCTC 2 cut(s) 154, 230
EcoRI GAATTC 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 1117
EcoRV GATATC 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 1440
EcoT38I GRGCYC 2 cut(s) 156, 232
ErhI CCWWGG 1 cut(s) 1440
FaeI CATG 7 cut(s) 68, 290, 307, 530, 668, 1207, 1323
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 7 cut(s) 64, 286, 303, 526, 664, 1203, 1319
FbaI TGATCA 1 cut(s) 967
FblI GTMKAC 3 cut(s) 588, 1024, 1208
Fnu4HI GCNGC 3 cut(s) 93, 670, 837
FokI GGATG 2 cut(s) 307, 900
FriOI GRGCYC 2 cut(s) 156, 232
Fsp4HI GCNGC 3 cut(s) 93, 670, 837
FspBI CTAG 4 cut(s) 45, 327, 813, 1100
GluI GCNGC 3 cut(s) 93, 670, 837
GsuI CTGGAG 2 cut(s) 880, 1140
HaeIII GGCC 1 cut(s) 1416
HapII CCGG 4 cut(s) 486, 569, 635, 1410
HgaI GACGC 1 cut(s) 1344
Hin1II CATG 7 cut(s) 68, 290, 307, 530, 668, 1207, 1323
HincII GTYRAC 5 cut(s) 26, 589, 1025, 1154, 1209
HindII GTYRAC 5 cut(s) 26, 589, 1025, 1154, 1209
HinfI GANTC 6 cut(s) 98, 383, 431, 851, 930, 1051
HpaII CCGG 4 cut(s) 486, 569, 635, 1410
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 5 cut(s) 26, 589, 1025, 1154, 1209
Hpy188I TCNGA 9 cut(s) 250, 382, 682, 935, 1050, 1141, 1183, 1238, 1368
Hpy188III TCNNGA 7 cut(s) 35, 59, 146, 257, 1059, 1100, 1410
Hpy8I GTNNAC 5 cut(s) 26, 589, 1025, 1154, 1209
HpyAV CCTTC 6 cut(s) 187, 927, 1065, 1081, 1146, 1426
HpyCH4III ACNGT 5 cut(s) 403, 472, 1256, 1316, 1407
HpyCH4IV ACGT 1 cut(s) 871
HpyCH4V TGCA 7 cut(s) 244, 307, 368, 447, 839, 1387, 1397
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 250, 365, 419
HpyF3I CTNAG 5 cut(s) 15, 33, 96, 738, 1182
HpySE526I ACGT 1 cut(s) 871
Hsp92II CATG 7 cut(s) 68, 290, 307, 530, 668, 1207, 1323
Kpn2I TCCGGA 1 cut(s) 1409
Ksp22I TGATCA 1 cut(s) 967
Kzo9I GATC 4 cut(s) 61, 967, 1233, 1330
LmnI GCTCC 3 cut(s) 151, 899, 1260
Lsp1109I GCAGC 3 cut(s) 79, 681, 823
LweI GCATC 4 cut(s) 262, 265, 355, 1149
MaeI CTAG 4 cut(s) 45, 327, 813, 1100
MaeII ACGT 1 cut(s) 871
MaeIII GTNAC 2 cut(s) 370, 472
MalI GATC 4 cut(s) 63, 969, 1235, 1332
MboI GATC 4 cut(s) 61, 967, 1233, 1330
MboII GAAGA 7 cut(s) 96, 378, 513, 528, 594, 797, 800
MflI RGATCY 1 cut(s) 1330
MhlI GDGCHC 2 cut(s) 156, 232
MluCI AATT 8 cut(s) 298, 308, 322, 1071, 1198, 1267, 1308, 1372
MlyI GAGTC 2 cut(s) 107, 440
MnlI CCTC 9 cut(s) 142, 199, 877, 931, 1288, 1292, 1297, 1351, 1406
MroI TCCGGA 1 cut(s) 1409
MseI TTAA 3 cut(s) 731, 1311, 1447
MslI CAYNNNNRTG 1 cut(s) 830
MspI CCGG 4 cut(s) 486, 569, 635, 1410
MspR9I CCNGG 1 cut(s) 1119
MvaI CCWGG 1 cut(s) 1119
MwoI GCNNNNNNNGC 4 cut(s) 236, 250, 365, 419
NdeII GATC 4 cut(s) 61, 967, 1233, 1330
NlaIII CATG 7 cut(s) 68, 290, 307, 530, 668, 1207, 1323
NlaIV GGNNCC 2 cut(s) 942, 1438
NmuCI GTSAC 1 cut(s) 472
NspI RCATGY 2 cut(s) 290, 1323
NspV TTCGAA 1 cut(s) 1430
PceI AGGCCT 1 cut(s) 1416
PciI ACATGT 2 cut(s) 286, 1319
PcsI WCGNNNNNNNCGW 2 cut(s) 136, 1021
PfeI GAWTC 4 cut(s) 383, 851, 930, 1051
PflFI GACNNNGTC 1 cut(s) 686
PfoI TCCNGGA 1 cut(s) 1117
PinAI ACCGGT 2 cut(s) 568, 634
PkrI GCNGC 3 cut(s) 94, 671, 838
PleI GAGTC 2 cut(s) 106, 439
PpsI GAGTC 2 cut(s) 106, 439
Ppu21I YACGTR 1 cut(s) 872
PscI ACATGT 2 cut(s) 286, 1319
PsiI TTATAA 1 cut(s) 216
Psp124BI GAGCTC 2 cut(s) 156, 232
Psp6I CCWGG 1 cut(s) 1117
PspGI CCWGG 1 cut(s) 1117
PspN4I GGNNCC 2 cut(s) 942, 1438
PspPI GGNCC 2 cut(s) 1110, 1407
PstI CTGCAG 1 cut(s) 1399
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 1 cut(s) 1330
PsyI GACNNNGTC 1 cut(s) 686
RsaI GTAC 4 cut(s) 164, 400, 891, 1318
RsaNI GTAC 4 cut(s) 163, 399, 890, 1317
RseI CAYNNNNRTG 1 cut(s) 830
Rsr2I CGGWCCG 1 cut(s) 1407
RsrII CGGWCCG 1 cut(s) 1407
SacI GAGCTC 2 cut(s) 156, 232
SalI GTCGAC 3 cut(s) 587, 1023, 1207
SaqAI TTAA 3 cut(s) 731, 1311, 1447
SatI GCNGC 3 cut(s) 93, 670, 837
Sau3AI GATC 4 cut(s) 61, 967, 1233, 1330
Sau96I GGNCC 2 cut(s) 1110, 1407
SchI GAGTC 2 cut(s) 107, 440
ScrFI CCNGG 1 cut(s) 1119
SduI GDGCHC 2 cut(s) 156, 232
SfaNI GCATC 4 cut(s) 262, 265, 355, 1149
SfcI CTRYAG 2 cut(s) 454, 1395
SfuI TTCGAA 1 cut(s) 1430
SinI GGWCC 2 cut(s) 1110, 1407
SmiMI CAYNNNNRTG 1 cut(s) 830
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 8 cut(s) 298, 308, 322, 1071, 1198, 1267, 1308, 1372
SseBI AGGCCT 1 cut(s) 1416
SsiI CCGC 2 cut(s) 292, 1004
SspI AATATT 1 cut(s) 1216
SspMI CTAG 4 cut(s) 45, 327, 813, 1100
SstI GAGCTC 2 cut(s) 156, 232
StuI AGGCCT 1 cut(s) 1416
StyD4I CCNGG 1 cut(s) 1117
StyI CCWWGG 1 cut(s) 1440
TaaI ACNGT 5 cut(s) 403, 472, 1256, 1316, 1407
TaiI ACGT 1 cut(s) 874
TaqII GACCGA 1 cut(s) 525
TasI AATT 8 cut(s) 298, 308, 322, 1071, 1198, 1267, 1308, 1372
TatI WGTACW 3 cut(s) 162, 398, 1316
TfiI GAWTC 4 cut(s) 383, 851, 930, 1051
Tru1I TTAA 3 cut(s) 731, 1311, 1447
Tru9I TTAA 3 cut(s) 731, 1311, 1447
TscAI CASTG 3 cut(s) 408, 904, 1084
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 3 cut(s) 92, 669, 836
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 3 cut(s) 311, 495, 1022
TspGWI ACGGA 2 cut(s) 607, 1123
TspRI CASTG 3 cut(s) 408, 904, 1084
Tth111I GACNNNGTC 1 cut(s) 686
VpaK11BI GGWCC 2 cut(s) 1110, 1407
XapI RAATTY 3 cut(s) 298, 1198, 1372
XbaI TCTAGA 1 cut(s) 1099
XceI RCATGY 2 cut(s) 290, 1323
XmiI GTMKAC 3 cut(s) 588, 1024, 1208
XspI CTAG 4 cut(s) 45, 327, 813, 1100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.